Rw2G011810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001534
Physical Location & Seq
Reverse (-)
11861397 .. 11862168
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011810.1

Sequence Viewer

Length: 294 bp
ATGGAAGGCGCGTCGCAGCTGGTACGGACTGGAAGGAAGTCATCGATAGAAAGTGAGCCGAGAACGCTGGGTTTCATCAGATCCAATATGCAAGGGTATGAGGCAGCTGAGTACGTGATGAATACAAAGGATTTAGAAGAAGCAAAGCGCATTTTCACTCAGGGATTACAGCCAGTAGTGAGCGTGATGAAACCAACTGGAGAGGAGATGACGGATTCGGTTGACGAATTTGAGTATTCAGAAGATCGATACCGATTATCTGAACTAAGGGATGTAGTCACAGCGCCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.06

Weight (kDa)

4.66

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AclWI GGATC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 2 cut(s) 24, 113
AluBI AGCT 2 cut(s) 19, 107
AluI AGCT 2 cut(s) 19, 107
AlwI GGATC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 16, 104
ApoI RAATTY 1 cut(s) 227
AspLEI GCGC 3 cut(s) 11, 150, 286
BbvI GCAGC 2 cut(s) 28, 116
BfoI RGCGCY 1 cut(s) 287
BisI GCNGC 2 cut(s) 17, 105
BlsI GCNGC 2 cut(s) 18, 106
BpmI CTGGAG 1 cut(s) 219
Bsa29I ATCGAT 2 cut(s) 44, 247
BsaAI YACGTR 1 cut(s) 115
Bse1I ACTGG 3 cut(s) 34, 173, 202
BseCI ATCGAT 2 cut(s) 44, 247
BseGI GGATG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 99, 173
BseNI ACTGG 3 cut(s) 34, 173, 202
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 28, 116
BseYI CCCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 11
BshVI ATCGAT 2 cut(s) 44, 247
Bsp143I GATC 2 cut(s) 80, 244
BspCNI CTCAG 2 cut(s) 100, 172
BspDI ATCGAT 2 cut(s) 44, 247
BspFNI CGCG 1 cut(s) 11
BspPI GGATC 1 cut(s) 75
BsrI ACTGG 3 cut(s) 34, 173, 202
BssMI GATC 2 cut(s) 80, 244
BstBAI YACGTR 1 cut(s) 115
BstDEI CTNAG 3 cut(s) 108, 159, 266
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 3 cut(s) 11, 150, 286
BstKTI GATC 2 cut(s) 83, 247
BstMBI GATC 2 cut(s) 80, 244
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 28, 116
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
Bsu15I ATCGAT 2 cut(s) 44, 247
BsuTUI ATCGAT 2 cut(s) 44, 247
BtsCI GGATG 1 cut(s) 277
CfoI GCGC 3 cut(s) 11, 150, 286
ClaI ATCGAT 2 cut(s) 44, 247
Csp6I GTAC 2 cut(s) 23, 112
CviJI RGCY 4 cut(s) 19, 58, 107, 172
CviKI_1 RGCY 4 cut(s) 19, 58, 107, 172
CviQI GTAC 2 cut(s) 23, 112
DdeI CTNAG 3 cut(s) 108, 159, 266
DpnI GATC 2 cut(s) 82, 246
DpnII GATC 2 cut(s) 80, 244
FaiI YATR 2 cut(s) 89, 99
Fnu4HI GCNGC 2 cut(s) 17, 105
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 17, 105
GlaI GCGC 3 cut(s) 10, 149, 285
GluI GCNGC 2 cut(s) 17, 105
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 219
HaeII RGCGCY 1 cut(s) 287
HhaI GCGC 3 cut(s) 11, 150, 286
Hin6I GCGC 3 cut(s) 9, 148, 284
HinP1I GCGC 3 cut(s) 9, 148, 284
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 80, 241, 262
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 3 cut(s) 108, 159, 266
HpySE526I ACGT 1 cut(s) 114
HspAI GCGC 3 cut(s) 9, 148, 284
Kzo9I GATC 2 cut(s) 80, 244
LpnPI CCDG 6 cut(s) 5, 15, 53, 146, 183, 186
Lsp1109I GCAGC 2 cut(s) 28, 116
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 82, 246
MboI GATC 2 cut(s) 80, 244
MboII GAAGA 2 cut(s) 149, 254
MflI RGATCY 1 cut(s) 80
MluCI AATT 1 cut(s) 227
MnlI CCTC 2 cut(s) 94, 196
MspA1I CMGCKG 2 cut(s) 19, 107
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 2 cut(s) 80, 244
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 2 cut(s) 18, 106
Ppu21I YACGTR 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 80
PvuII CAGCTG 2 cut(s) 19, 107
RsaI GTAC 2 cut(s) 24, 113
RsaNI GTAC 2 cut(s) 23, 112
SatI GCNGC 2 cut(s) 17, 105
Sau3AI GATC 2 cut(s) 80, 244
SetI ASST 3 cut(s) 21, 109, 117
Sse9I AATT 1 cut(s) 227
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 44, 247
TasI AATT 1 cut(s) 227
TfiI GAWTC 1 cut(s) 215
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 16, 104
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 64, 134, 203
TspGWI ACGGA 2 cut(s) 40, 227
XapI RAATTY 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.