Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

69085443 .. 69086481

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACGACGTATTGGCGGGAAGGAGAGGCGGTTTATGAGGAGGGTTTCGATGGCGGCGAGGTTGCGCGCCATCGAGGGTGTCCGTCGGAGCAAGATGCTCATCATTTTGGGGGTGTCGTGTGCTTTGGCAGCAGCGATGGTAATTTTGGGCCGCACAAGGCAGCGGCGGTGGGAGGTGTTCCTGGGCAGTCTGGATCGGTGATGGTCCCAGGGTCTCGATGCTTGGTGCTGTCTGAGCAGGCAGATCTAGTGGTCGCGACCGGTCGGGGTACGGACTGGAGCTTTGGGTGGTGGCCTGGGGTGGATTCTCGACCTCTGTTGCTGGCGGTCGAGGATTGTGACGGAGGTGGCGACGTCAATTACCTTGGCCTGGGGTTGCCTGCGGCGATGGGTATGGTGGACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.02

Weight (kDa)

4.43

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	357
AccII	CGCG	2 cut(s)	67, 257
AciI	CCGC	8 cut(s)	16, 29, 54, 152, 164, 167, 326, 383
AclWI	GGATC	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgeI	ACCGGT	1 cut(s)	260
AjnI	CCWGG	4 cut(s)	181, 208, 295, 369
AluBI	AGCT	1 cut(s)	282
AluI	AGCT	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	3 cut(s)	149, 293, 367
ApeKI	GCWGC	3 cut(s)	129, 132, 161
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AsiGI	ACCGGT	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	67, 69
AspS9I	GGNCC	2 cut(s)	149, 205
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	141, 144, 173
BccI	CCATC	5 cut(s)	44, 78, 131, 196, 382
BciT130I	CCWGG	4 cut(s)	183, 210, 297, 371
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	248
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	7 cut(s)	55, 130, 133, 152, 162, 165, 384
BlsI	GCNGC	7 cut(s)	56, 131, 134, 153, 163, 166, 385
Bme1390I	CCNGG	4 cut(s)	183, 210, 297, 371
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	149, 205
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	4 cut(s)	183, 210, 297, 371
BmsI	GCATC	2 cut(s)	85, 209
BpmI	CTGGAG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	6 cut(s)	182, 208, 209, 296, 364, 370
BsaWI	WCCGGW	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	281
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	4 cut(s)	183, 210, 297, 371
BseDI	CCNNGG	6 cut(s)	182, 208, 209, 296, 364, 370
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	281
BsePI	GCGCGC	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	141, 144, 173
Bsh1236I	CGCG	2 cut(s)	67, 257
Bsh1285I	CGRYCG	3 cut(s)	261, 265, 330
BshFI	GGCC	3 cut(s)	151, 295, 369
BshTI	ACCGGT	1 cut(s)	260
BsiEI	CGRYCG	3 cut(s)	261, 265, 330
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	151, 295, 369
Bso31I	GGTCTC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	194, 244
Bsp68I	TCGCGA	1 cut(s)	257
BspACI	CCGC	8 cut(s)	16, 29, 54, 152, 164, 167, 326, 383
BspANI	GGCC	3 cut(s)	151, 295, 369
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	2 cut(s)	67, 257
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	6 cut(s)	182, 208, 209, 296, 364, 370
BssHII	GCGCGC	1 cut(s)	65
BssMI	GATC	2 cut(s)	194, 244
BssNI	GRCGYC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	4 cut(s)	183, 210, 297, 371
BstACI	GRCGYC	1 cut(s)	354
BstC8I	GCNNGC	4 cut(s)	67, 240, 324, 381
BstDEI	CTNAG	1 cut(s)	234
BstFNI	CGCG	2 cut(s)	67, 257
BstHHI	GCGC	2 cut(s)	67, 69
BstKTI	GATC	2 cut(s)	197, 247
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	2 cut(s)	194, 244
BstMCI	CGRYCG	3 cut(s)	261, 265, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 235
BstNI	CCWGG	4 cut(s)	183, 210, 297, 371
BstSCI	CCNGG	4 cut(s)	181, 208, 295, 369
BstUI	CGCG	2 cut(s)	67, 257
BstV1I	GCAGC	3 cut(s)	141, 144, 173
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	151, 295, 369
BtgZI	GCGATG	2 cut(s)	150, 401
BtuMI	TCGCGA	1 cut(s)	257
Cac8I	GCNNGC	4 cut(s)	67, 240, 324, 381
CfoI	GCGC	2 cut(s)	67, 69
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	149, 205
Csp6I	GTAC	1 cut(s)	270
CspAI	ACCGGT	1 cut(s)	260
CviJI	RGCY	4 cut(s)	151, 282, 295, 369
CviKI_1	RGCY	4 cut(s)	151, 282, 295, 369
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	196, 246
DpnII	GATC	2 cut(s)	194, 244
Eco130I	CCWWGG	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	205
EcoRII	CCWGG	4 cut(s)	181, 208, 295, 369
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
FaiI	YATR	2 cut(s)	36, 395
FaqI	GGGAC	1 cut(s)	191
FauI	CCCGC	1 cut(s)	9
Fnu4HI	GCNGC	7 cut(s)	55, 130, 133, 152, 162, 165, 384
Fsp4HI	GCNGC	7 cut(s)	55, 130, 133, 152, 162, 165, 384
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	2 cut(s)	66, 68
GluI	GCNGC	7 cut(s)	55, 130, 133, 152, 162, 165, 384
GsuI	CTGGAG	1 cut(s)	298
HaeIII	GGCC	3 cut(s)	151, 295, 369
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	2 cut(s)	67, 69
Hin1I	GRCGYC	1 cut(s)	354
Hin6I	GCGC	2 cut(s)	65, 67
HinP1I	GCGC	2 cut(s)	65, 67
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	88, 235
Hpy188III	TCNNGA	4 cut(s)	192, 216, 256, 309
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	3 cut(s)	10, 88, 356
HpyAV	CCTTC	1 cut(s)	14
HpyCH4IV	ACGT	2 cut(s)	8, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 235
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	2 cut(s)	8, 354
Hsp92I	GRCGYC	1 cut(s)	354
HspAI	GCGC	2 cut(s)	65, 67
Kzo9I	GATC	2 cut(s)	194, 244
LmnI	GCTCC	2 cut(s)	88, 279
Lsp1109I	GCAGC	3 cut(s)	141, 144, 173
LweI	GCATC	2 cut(s)	85, 209
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	8, 354
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	2 cut(s)	196, 246
MboI	GATC	2 cut(s)	194, 244
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	2 cut(s)	142, 358
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	9 cut(s)	19, 31, 34, 52, 68, 167, 324, 325, 338
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	4 cut(s)	183, 210, 297, 371
MvaI	CCWGG	4 cut(s)	183, 210, 297, 371
MvnI	CGCG	2 cut(s)	67, 257
MwoI	GCNNNNNNNGC	2 cut(s)	129, 235
NdeII	GATC	2 cut(s)	194, 244
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	338
NruI	TCGCGA	1 cut(s)	257
PasI	CCCWGGG	1 cut(s)	209
PauI	GCGCGC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 348
PfeI	GAWTC	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	7 cut(s)	56, 131, 134, 153, 163, 166, 385
Psp6I	CCWGG	4 cut(s)	181, 208, 295, 369
PspGI	CCWGG	4 cut(s)	181, 208, 295, 369
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	149, 205
PsuI	RGATCY	1 cut(s)	244
PteI	GCGCGC	1 cut(s)	65
RruI	TCGCGA	1 cut(s)	257
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SatI	GCNGC	7 cut(s)	55, 130, 133, 152, 162, 165, 384
Sau3AI	GATC	2 cut(s)	194, 244
Sau96I	GGNCC	2 cut(s)	149, 205
ScrFI	CCNGG	4 cut(s)	183, 210, 297, 371
SetI	ASST	8 cut(s)	11, 63, 178, 284, 316, 349, 357, 366
SfaNI	GCATC	2 cut(s)	85, 209
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	2 cut(s)	142, 358
SsiI	CCGC	8 cut(s)	16, 29, 54, 152, 164, 167, 326, 383
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	4 cut(s)	181, 208, 295, 369
StyI	CCWWGG	1 cut(s)	364
TaiI	ACGT	2 cut(s)	11, 357
TaqI	TCGA	5 cut(s)	48, 73, 217, 310, 330
TasI	AATT	2 cut(s)	142, 358
TauI	GCSGC	4 cut(s)	57, 154, 167, 386
TfiI	GAWTC	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	3 cut(s)	129, 132, 161
Tsp45I	GTSAC	1 cut(s)	338
TspGWI	ACGGA	3 cut(s)	72, 287, 357
VpaK11BI	GGWCC	1 cut(s)	205
XspI	CTAG	1 cut(s)	248
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.