Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

46244859 .. 46245394

Gene Structure 536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019095

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCTAGGTTACTCTCTCTGAGAGGTAGGTGGAGGTCGTGGCCTCCTGGCGGCGGTTCTGCAAATTGGGTTAGAGGAGATGGGGTTTCCTTCTCGTCTAGTCGCAGGGGGATTGAGGATGGCTGGGTTCCCCGTCATCAGATTCTCAAAATTGGGGGCAATGAAGAGCTTCTGTCTCGGGTGGCTTTTCACGGCAACGGCAATGGTTTCAAGTCTTTCTTAACCCGGGATGTTTTGGAAGGTTTGGCTCGTCAGGTCGCGGGGTGGAGCACCGGGGGCAGTCAGGCTAACAGATGCAGCGCTGATCTATGCTGGAGCGAGGTTGGTTGCTGTTGGGAGAAGCGACGATGGCGACGACCAGCGATGGATGGCCTCCCAGTCCGGCGTCGTAGACTGGAGGCGGTCTGGTGTGCTGCCGTACTTGATTTGGGTGCCCATGAGTTTGGGTGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.89

Weight (kDa)

10.59

Isoelectric Point (pI)

70.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccI	GTMKAC	1 cut(s)	391
AccII	CGCG	1 cut(s)	260
AciI	CCGC	4 cut(s)	51, 54, 260, 401
AcyI	GRCGYC	1 cut(s)	385
AfaI	GTAC	1 cut(s)	420
AfeI	AGCGCT	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	50, 53
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	180
Ama87I	CYCGRG	2 cut(s)	177, 225
Aor51HI	AGCGCT	1 cut(s)	301
AoxI	GGCC	3 cut(s)	41, 370, 449
ApeKI	GCWGC	2 cut(s)	297, 413
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	302
AsuC2I	CCSGG	3 cut(s)	226, 227, 274
AvaI	CYCGRG	2 cut(s)	177, 225
BaeGI	GKGCMC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	309, 400
BccI	CCATC	5 cut(s)	74, 113, 342, 358, 362
BceAI	ACGGC	3 cut(s)	208, 214, 401
BciT130I	CCWGG	1 cut(s)	48
BcnI	CCSGG	3 cut(s)	226, 227, 274
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	6, 99
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	3 cut(s)	52, 298, 414
BlsI	GCNGC	3 cut(s)	53, 299, 415
Bme1390I	CCNGG	4 cut(s)	48, 226, 227, 274
BmeT110I	CYCGRG	2 cut(s)	177, 225
BmiI	GGNNCC	2 cut(s)	129, 433
BmrFI	CCNGG	4 cut(s)	48, 226, 227, 274
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	371
BpmI	CTGGAG	2 cut(s)	334, 416
BpuMI	CCSGG	3 cut(s)	226, 227, 274
BsaHI	GRCGYC	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	225, 273
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 53
Bse1I	ACTGG	2 cut(s)	377, 399
Bse3DI	GCAATG	2 cut(s)	166, 208
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	225, 273
BseGI	GGATG	3 cut(s)	124, 235, 373
BseLI	CCNNNNNNNGG	2 cut(s)	50, 53
BseMI	GCAATG	2 cut(s)	166, 208
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	377, 399
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	309, 400
BseYI	CCCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	43, 372, 451
BshNI	GGYRCC	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	272
BsiHKCI	CYCGRG	2 cut(s)	177, 225
BsiSI	CCGG	3 cut(s)	226, 273, 382
BslI	CCNNNNNNNGG	2 cut(s)	50, 53
BsmAI	GTCTC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	43, 372, 451
BsoBI	CYCGRG	2 cut(s)	177, 225
Bsp1286I	GDGCHC	2 cut(s)	272, 436
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	4 cut(s)	51, 54, 260, 401
BspANI	GGCC	3 cut(s)	43, 372, 451
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	129, 433
BspQI	GCTCTTC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	431
BsrDI	GCAATG	2 cut(s)	166, 208
BsrI	ACTGG	2 cut(s)	377, 399
BssECI	CCNNGG	2 cut(s)	225, 273
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	20, 453
BstF5I	GGATG	3 cut(s)	124, 235, 373
BstFNI	CGCG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 349
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	4 cut(s)	46, 224, 225, 272
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	309, 400
BstXI	CCANNNNNNTGG	1 cut(s)	443
BsuRI	GGCC	3 cut(s)	43, 372, 451
BtgZI	GCGATG	1 cut(s)	377
BtsCI	GGATG	3 cut(s)	124, 235, 373
CfoI	GCGC	1 cut(s)	302
Cfr9I	CCCGGG	1 cut(s)	225
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	1 cut(s)	437
CviJI	RGCY	8 cut(s)	43, 123, 169, 185, 248, 287, 372, 451
CviKI_1	RGCY	8 cut(s)	43, 123, 169, 185, 248, 287, 372, 451
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	2 cut(s)	20, 453
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco47III	AGCGCT	1 cut(s)	301
Eco88I	CYCGRG	2 cut(s)	177, 225
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	440
FaiI	YATR	2 cut(s)	310, 438
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	1 cut(s)	436
FauI	CCCGC	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	52, 298, 414
FokI	GGATG	3 cut(s)	131, 242, 380
Fsp4HI	GCNGC	3 cut(s)	52, 298, 414
FspBI	CTAG	2 cut(s)	6, 99
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	3 cut(s)	52, 298, 414
GsaI	CCCAGC	1 cut(s)	127
GsuI	CTGGAG	2 cut(s)	334, 416
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	43, 372, 451
HapII	CCGG	3 cut(s)	226, 273, 382
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	3 cut(s)	226, 273, 382
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	21, 141
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	3 cut(s)	348, 357, 390
HpyAV	CCTTC	2 cut(s)	100, 233
HpyCH4V	TGCA	2 cut(s)	62, 297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 349
HpyF3I	CTNAG	2 cut(s)	20, 453
Hsp92I	GRCGYC	1 cut(s)	385
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	267, 315
Lsp1109I	GCAGC	2 cut(s)	309, 400
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	2 cut(s)	6, 99
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	272, 436
MluCI	AATT	2 cut(s)	64, 150
MnlI	CCTC	8 cut(s)	17, 27, 54, 68, 109, 313, 383, 391
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	1 cut(s)	221
MspI	CCGG	3 cut(s)	226, 273, 382
MspR9I	CCNGG	4 cut(s)	48, 226, 227, 274
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	276, 349
NciI	CCSGG	3 cut(s)	226, 227, 274
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	2 cut(s)	129, 433
PciSI	GCTCTTC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	53, 299, 415
Psp6I	CCWGG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	129, 433
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	3 cut(s)	52, 298, 414
Sau3AI	GATC	1 cut(s)	304
ScrFI	CCNGG	4 cut(s)	48, 226, 227, 274
SduI	GDGCHC	2 cut(s)	272, 436
SetI	ASST	8 cut(s)	11, 28, 32, 38, 171, 244, 258, 324
SfaNI	GCATC	1 cut(s)	284
SmaI	CCCGGG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	64, 150
SsiI	CCGC	4 cut(s)	51, 54, 260, 401
SspMI	CTAG	2 cut(s)	6, 99
StyD4I	CCNGG	4 cut(s)	46, 224, 225, 272
TasI	AATT	2 cut(s)	64, 150
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseI	GCWGC	2 cut(s)	297, 413
TspDTI	ATGAA	1 cut(s)	177
TspMI	CCCGGG	1 cut(s)	225
XmaI	CCCGGG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	6, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.