Rmu_sc0004767.1_g000002

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004767.1
OG0001534
Physical Location & Seq
Forward (+)
4299 .. 8858
4560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004767.1_g000002.1.cds

Sequence Viewer

Length: 1065 bp
atgcttaggttactctctctgagaggtgggtggaggccgtggcctcttggcggcggctttgcaaattgggttggaggatatgggatttccctctcatctggtcgacgggggattgaaggcggcggggctcctcgttgtcggcttctcaaaattttaattcttgttttcttgttcggggtcgtgtgctttggtaacagcaatggtaattttgggccgtacaaggcaacggcagtgggatgtgttcctgggcaatctggatcggtgatggtcccggggtctcgatgcttggtgctgtctgagcaggaagatctggtggtcgcggctagttggggtgctgactggagcttcaggcggtggcctagggtggattctcgatctctgttgctggcagtcgaggattgtgatggaggtggcgacgtcaactaccttagcttggggttgactgcagcttggtgcgacaaaggttacggcagactgttgggtcagttgctgatcggcgtcgttgaagggaggacgactggtggttggtggctaatggctggggtgtccaagtggttgggtggtctcatcaattccagttgggcttggtactcttttgggcttccatctgctaggatagatcttgtcctcatcaccctcagcagcctcaagctcctcggcgacacccacttgaataatggcagtgtgcgtctcactcacgaccttgccgtccccaactccagcgccgacagagtgctgtactcaaagcccgtcctctttaagcaaccctccactccgtttccggctaccttctccacattcttcacgttctccgtcagcaattggaacccctcctcgatcggtagcgggctggcttttatcatctcgccggacgatgaggacccgggttcgggttccgggtcgagcttcatggcggtggagttcgacacgctcatggacgtggagttcaaggacattaatagcaaccatgtgggcctagatctcaactccatggtttcatcacaggtcggcgatcttggcactgcggatattgatctcaagagcagggacctcgtgaattgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

354

Amino Acids

37.83

Weight (kDa)

5.65

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 480, 707
AatII GACGTC 1 cut(s) 420
AccI GTMKAC 1 cut(s) 103
AccII CGCG 1 cut(s) 320
AciI CCGC 9 cut(s) 51, 54, 120, 123, 320, 352, 846, 914, 1025
AclWI GGATC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 331
AcyI GRCGYC 2 cut(s) 417, 498
AfaI GTAC 3 cut(s) 218, 590, 740
AfiI CCNNNNNNNGG 4 cut(s) 50, 433, 889, 890
AgsI TTSAA 4 cut(s) 116, 506, 673, 949
AjiI CACGTC 1 cut(s) 940
AjnI CCWGG 1 cut(s) 244
AloI GAACNNNNNNTCC 2 cut(s) 929, 961
AluBI AGCT 5 cut(s) 345, 432, 449, 652, 906
AluI AGCT 5 cut(s) 345, 432, 449, 652, 906
Alw26I GTCTC 3 cut(s) 282, 569, 695
AlwI GGATC 1 cut(s) 265
AlwNI CAGNNNCTG 1 cut(s) 490
Ama87I CYCGRG 2 cut(s) 271, 883
AoxI GGCC 5 cut(s) 35, 41, 212, 356, 973
ApeKI GCWGC 2 cut(s) 446, 642
ApoI RAATTY 1 cut(s) 150
AseI ATTAAT 1 cut(s) 957
AspA2I CCTAGG 1 cut(s) 359
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 5 cut(s) 212, 268, 880, 973, 1048
AsuC2I CCSGG 5 cut(s) 272, 273, 884, 885, 898
AsuHPI GGTGA 2 cut(s) 274, 625
AvaI CYCGRG 2 cut(s) 271, 883
AvaII GGWCC 3 cut(s) 268, 880, 1048
AvrII CCTAGG 1 cut(s) 359
BanII GRGCYC 1 cut(s) 130
BauI CACGAG 1 cut(s) 1052
BbvCI CCTCAGC 1 cut(s) 638
BbvI GCAGC 2 cut(s) 458, 654
BccI CCATC 3 cut(s) 259, 398, 613
BceAI ACGGC 5 cut(s) 22, 199, 243, 484, 692
BcgI CGANNNNNNTGC 1 cut(s) 1033
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 5 cut(s) 272, 273, 884, 885, 898
BcoDI GTCTC 3 cut(s) 282, 569, 695
BfaI CTAG 5 cut(s) 324, 360, 612, 977, 1063
BfmI CTRYAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 726
BglII AGATCT 3 cut(s) 307, 619, 979
BisI GCNGC 6 cut(s) 52, 55, 121, 321, 447, 643
BlnI CCTAGG 1 cut(s) 359
BlsI GCNGC 6 cut(s) 53, 56, 122, 322, 448, 644
Bme1390I CCNGG 6 cut(s) 246, 272, 273, 884, 885, 898
Bme18I GGWCC 3 cut(s) 268, 880, 1048
BmeT110I CYCGRG 2 cut(s) 271, 883
BmgBI CACGTC 1 cut(s) 940
BmgT120I GGNCC 5 cut(s) 212, 268, 880, 973, 1048
BmiI GGNNCC 6 cut(s) 129, 270, 827, 882, 895, 1049
BmrFI CCNGG 6 cut(s) 246, 272, 273, 884, 885, 898
BmsI GCATC 1 cut(s) 272
BpmI CTGGAG 2 cut(s) 361, 703
Bpu10I CCTNAGC 3 cut(s) 5, 428, 638
BpuEI CTTGAG 2 cut(s) 632, 1022
BpuMI CCSGG 5 cut(s) 272, 273, 884, 885, 898
BsaBI GATNNNNATC 1 cut(s) 1032
BsaHI GRCGYC 2 cut(s) 417, 498
BsaI GGTCTC 2 cut(s) 282, 569
BsaJI CCNNGG 8 cut(s) 38, 245, 271, 272, 359, 655, 883, 990
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 433, 889, 890
Bse1I ACTGG 3 cut(s) 344, 523, 576
Bse3DI GCAATG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 1032
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 8 cut(s) 38, 245, 271, 272, 359, 655, 883, 990
BseGI GGATG 1 cut(s) 242
BseJI GATNNNNATC 1 cut(s) 1032
BseLI CCNNNNNNNGG 4 cut(s) 50, 433, 889, 890
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 3 cut(s) 11, 288, 652
BseNI ACTGG 3 cut(s) 344, 523, 576
BseRI GAGGAG 3 cut(s) 120, 644, 823
BseXI GCAGC 2 cut(s) 458, 654
BseYI CCCAGC 1 cut(s) 539
Bsh1236I CGCG 1 cut(s) 320
Bsh1285I CGRYCG 1 cut(s) 840
BshFI GGCC 5 cut(s) 37, 43, 214, 358, 975
BsiEI CGRYCG 1 cut(s) 840
BsiHKCI CYCGRG 2 cut(s) 271, 883
BsiSI CCGG 5 cut(s) 272, 782, 869, 884, 897
BslFI GGGAC 3 cut(s) 254, 695, 1061
BslI CCNNNNNNNGG 4 cut(s) 50, 433, 889, 890
BsmAI GTCTC 3 cut(s) 282, 569, 695
BsmBI CGTCTC 1 cut(s) 695
BsmFI GGGAC 3 cut(s) 254, 695, 1061
BsnI GGCC 5 cut(s) 37, 43, 214, 358, 975
Bso31I GGTCTC 2 cut(s) 282, 569
BsoBI CYCGRG 2 cut(s) 271, 883
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 9 cut(s) 257, 307, 374, 492, 619, 837, 979, 1012, 1033
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 9 cut(s) 51, 54, 120, 123, 320, 352, 846, 914, 1025
BspANI GGCC 5 cut(s) 37, 43, 214, 358, 975
BspCNI CTCAG 3 cut(s) 12, 289, 651
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 6 cut(s) 129, 270, 827, 882, 895, 1049
BspMAI CTGCAG 1 cut(s) 448
BspPI GGATC 1 cut(s) 265
BspTNI GGTCTC 2 cut(s) 282, 569
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 3 cut(s) 344, 523, 576
BssECI CCNNGG 8 cut(s) 38, 245, 271, 272, 359, 655, 883, 990
BssMI GATC 9 cut(s) 257, 307, 374, 492, 619, 837, 979, 1012, 1033
BssNI GRCGYC 2 cut(s) 417, 498
BssSI CACGAG 1 cut(s) 1052
BssT1I CCWWGG 2 cut(s) 359, 990
Bst2BI CACGAG 1 cut(s) 1052
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 477
BstACI GRCGYC 2 cut(s) 417, 498
BstC8I GCNNGC 3 cut(s) 387, 848, 852
BstDEI CTNAG 5 cut(s) 5, 20, 297, 428, 638
BstDSI CCRYGG 2 cut(s) 38, 990
BstF5I GGATG 1 cut(s) 242
BstFNI CGCG 1 cut(s) 320
BstH2I RGCGCY 1 cut(s) 726
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 9 cut(s) 260, 310, 377, 495, 622, 840, 982, 1015, 1036
BstMAI GTCTC 3 cut(s) 282, 569, 695
BstMBI GATC 9 cut(s) 257, 307, 374, 492, 619, 837, 979, 1012, 1033
BstMCI CGRYCG 1 cut(s) 840
BstMWI GCNNNNNNNGC 2 cut(s) 298, 1017
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 6 cut(s) 244, 270, 271, 882, 883, 896
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 458, 654
BstX2I RGATCY 3 cut(s) 307, 619, 979
BstXI CCANNNNNNTGG 1 cut(s) 556
BstYI RGATCY 3 cut(s) 307, 619, 979
BsuRI GGCC 5 cut(s) 37, 43, 214, 358, 975
BtgI CCRYGG 2 cut(s) 38, 990
BtrI CACGTC 1 cut(s) 940
BtsCI GGATG 1 cut(s) 242
BtsI GCAGTG 3 cut(s) 237, 688, 1020
BtsIMutI CAGTG 3 cut(s) 237, 688, 1020
Cac8I GCNNGC 3 cut(s) 387, 848, 852
CaiI CAGNNNCTG 1 cut(s) 490
CfoI GCGC 1 cut(s) 725
Cfr13I GGNCC 5 cut(s) 212, 268, 880, 973, 1048
Cfr9I CCCGGG 2 cut(s) 271, 883
CseI GACGC 2 cut(s) 487, 677
Csp6I GTAC 3 cut(s) 217, 589, 739
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 4 cut(s) 910, 934, 968, 991
CviQI GTAC 3 cut(s) 217, 589, 739
DdeI CTNAG 5 cut(s) 5, 20, 297, 428, 638
DpnI GATC 9 cut(s) 259, 309, 376, 494, 621, 839, 981, 1014, 1035
DpnII GATC 9 cut(s) 257, 307, 374, 492, 619, 837, 979, 1012, 1033
DrdI GACNNNNNNGTC 2 cut(s) 480, 707
DseDI GACNNNNNNGTC 2 cut(s) 480, 707
Eco130I CCWWGG 2 cut(s) 359, 990
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 2 cut(s) 282, 569
Eco47I GGWCC 3 cut(s) 268, 880, 1048
Eco57I CTGAAG 1 cut(s) 331
Eco88I CYCGRG 2 cut(s) 271, 883
EcoO109I RGGNCCY 2 cut(s) 880, 1048
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 359, 990
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 359, 990
Esp3I CGTCTC 1 cut(s) 695
FaeI CATG 4 cut(s) 913, 937, 971, 994
FaiI YATR 5 cut(s) 81, 911, 935, 969, 992
FaqI GGGAC 3 cut(s) 254, 695, 1061
FatI CATG 4 cut(s) 909, 933, 967, 990
FauI CCCGC 2 cut(s) 116, 839
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 6 cut(s) 52, 55, 121, 321, 447, 643
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 6 cut(s) 52, 55, 121, 321, 447, 643
FspBI CTAG 5 cut(s) 324, 360, 612, 977, 1063
GlaI GCGC 1 cut(s) 724
GluI GCNGC 6 cut(s) 52, 55, 121, 321, 447, 643
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 2 cut(s) 361, 703
HaeII RGCGCY 1 cut(s) 726
HaeIII GGCC 5 cut(s) 37, 43, 214, 358, 975
HapII CCGG 5 cut(s) 272, 782, 869, 884, 897
HgaI GACGC 2 cut(s) 487, 677
HhaI GCGC 1 cut(s) 725
Hin1I GRCGYC 2 cut(s) 417, 498
Hin1II CATG 4 cut(s) 913, 937, 971, 994
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HincII GTYRAC 3 cut(s) 104, 421, 441
HindII GTYRAC 3 cut(s) 104, 421, 441
HinfI GANTC 1 cut(s) 368
HpaII CCGG 5 cut(s) 272, 782, 869, 884, 897
HphI GGTGA 2 cut(s) 274, 625
Hpy166II GTNNAC 3 cut(s) 104, 421, 441
Hpy188I TCNGA 2 cut(s) 21, 298
Hpy188III TCNNGA 6 cut(s) 255, 279, 372, 698, 1039, 1054
Hpy8I GTNNAC 3 cut(s) 104, 421, 441
Hpy99I CGWCG 3 cut(s) 108, 419, 503
HpyAV CCTTC 3 cut(s) 110, 500, 799
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4IV ACGT 3 cut(s) 417, 806, 939
HpyCH4V TGCA 2 cut(s) 62, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 1017
HpyF3I CTNAG 5 cut(s) 5, 20, 297, 428, 638
HpySE526I ACGT 3 cut(s) 417, 806, 939
Hsp92I GRCGYC 2 cut(s) 417, 498
Hsp92II CATG 4 cut(s) 913, 937, 971, 994
HspAI GCGC 1 cut(s) 723
Kzo9I GATC 9 cut(s) 257, 307, 374, 492, 619, 837, 979, 1012, 1033
LmnI GCTCC 3 cut(s) 133, 342, 657
Lsp1109I GCAGC 2 cut(s) 458, 654
LweI GCATC 1 cut(s) 272
MaeI CTAG 5 cut(s) 324, 360, 612, 977, 1063
MaeII ACGT 3 cut(s) 417, 806, 939
MaeIII GTNAC 3 cut(s) 9, 191, 464
MalI GATC 9 cut(s) 259, 309, 376, 494, 621, 839, 981, 1014, 1035
MboI GATC 9 cut(s) 257, 307, 374, 492, 619, 837, 979, 1012, 1033
MboII GAAGA 2 cut(s) 317, 793
MfeI CAATTG 1 cut(s) 820
MflI RGATCY 3 cut(s) 307, 619, 979
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 7 cut(s) 64, 150, 156, 205, 571, 820, 1057
MmeI TCCRAC 1 cut(s) 52
MseI TTAA 3 cut(s) 155, 759, 957
MslI CAYNNNNRTG 3 cut(s) 914, 932, 938
MspI CCGG 5 cut(s) 272, 782, 869, 884, 897
MspR9I CCNGG 6 cut(s) 246, 272, 273, 884, 885, 898
MunI CAATTG 1 cut(s) 820
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 2 cut(s) 298, 1017
NciI CCSGG 5 cut(s) 272, 273, 884, 885, 898
NcoI CCATGG 1 cut(s) 990
NdeII GATC 9 cut(s) 257, 307, 374, 492, 619, 837, 979, 1012, 1033
NlaIII CATG 4 cut(s) 913, 937, 971, 994
NlaIV GGNNCC 6 cut(s) 129, 270, 827, 882, 895, 1049
NmeAIII GCCGAG 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 6 cut(s) 53, 56, 122, 322, 448, 644
Ple19I CGATCG 1 cut(s) 840
PpuMI RGGWCCY 2 cut(s) 880, 1048
PshBI ATTAAT 1 cut(s) 957
Psp5II RGGWCCY 2 cut(s) 880, 1048
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 6 cut(s) 129, 270, 827, 882, 895, 1049
PspPI GGNCC 5 cut(s) 212, 268, 880, 973, 1048
PspPPI RGGWCCY 2 cut(s) 880, 1048
PstI CTGCAG 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 490
PsuI RGATCY 3 cut(s) 307, 619, 979
PvuI CGATCG 1 cut(s) 840
RsaI GTAC 3 cut(s) 218, 590, 740
RsaNI GTAC 3 cut(s) 217, 589, 739
RseI CAYNNNNRTG 3 cut(s) 914, 932, 938
SalI GTCGAC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 155, 759, 957
SatI GCNGC 6 cut(s) 52, 55, 121, 321, 447, 643
Sau3AI GATC 9 cut(s) 257, 307, 374, 492, 619, 837, 979, 1012, 1033
Sau96I GGNCC 5 cut(s) 212, 268, 880, 973, 1048
ScrFI CCNGG 6 cut(s) 246, 272, 273, 884, 885, 898
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 3 cut(s) 268, 880, 1048
SmaI CCCGGG 2 cut(s) 273, 885
SmiMI CAYNNNNRTG 3 cut(s) 914, 932, 938
SmlI CTYRAG 2 cut(s) 647, 1037
SmoI CTYRAG 2 cut(s) 647, 1037
Sse9I AATT 7 cut(s) 64, 150, 156, 205, 571, 820, 1057
SsiI CCGC 9 cut(s) 51, 54, 120, 123, 320, 352, 846, 914, 1025
SspMI CTAG 5 cut(s) 324, 360, 612, 977, 1063
StyD4I CCNGG 6 cut(s) 244, 270, 271, 882, 883, 896
StyI CCWWGG 2 cut(s) 359, 990
TaaI ACNGT 1 cut(s) 477
TaiI ACGT 3 cut(s) 420, 809, 942
TaqI TCGA 7 cut(s) 103, 280, 373, 393, 836, 902, 924
TasI AATT 7 cut(s) 64, 150, 156, 205, 571, 820, 1057
TatI WGTACW 1 cut(s) 738
TauI GCSGC 4 cut(s) 54, 57, 123, 323
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 3 cut(s) 155, 759, 957
Tru9I TTAA 3 cut(s) 155, 759, 957
TscAI CASTG 3 cut(s) 237, 688, 1027
TseI GCWGC 2 cut(s) 446, 642
TspDTI ATGAA 2 cut(s) 898, 987
TspGWI ACGGA 2 cut(s) 765, 802
TspMI CCCGGG 2 cut(s) 271, 883
TspRI CASTG 3 cut(s) 237, 688, 1027
VpaK11BI GGWCC 3 cut(s) 268, 880, 1048
VspI ATTAAT 1 cut(s) 957
XapI RAATTY 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmaI CCCGGG 2 cut(s) 271, 883
XmaJI CCTAGG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 5 cut(s) 324, 360, 612, 977, 1063
ZraI GACGTC 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.