FvH4_1g14252

Cold acclimation protein WCOR413

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013591
Physical Location & Seq
Forward (+)
7889548 .. 7890054
507 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14252.t1

Sequence Viewer

Length: 333 bp
ATGCAAAGTTACCTTCTTGTAATGTATTTGTTTACAAGCTTCCCGACGGTGTTTGTTAAAATTCTGAGGGGACAGTTCGGCTATTGGGTTTCATTTCTTGCTGTTTCTACAAACCTCTTCTTTCCACAAACTTATCCAGTTTCTCGTTTTCTCCTATTTGTGGTTACACCTACTTGGGTGGCTAATGGACTGCGTAATAGTATTGTGGGTGGCATCTGTTGTCTAATTATTGGAATTTTAGTTGTCATAACAGCAAAGGAATTGGAGGTTTTAGTGATTGTTTTAGTAACTGTCAATGCAATTGTCATTGCTTTGTGTACTGTCTTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WCOR413

Protein Analysis

111

Amino Acids

12.21

Weight (kDa)

8.99

Isoelectric Point (pI)

23.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WCOR413 PF05562 1 - 81 3.8e-17 Cold acclimation protein WCOR413
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14181 FvH4_1g14252
malus_domestica MD15G1270400.v1.1
prunus_persica Prupe.7G147700_v2.0.a1
pyrus_communis pycom15g23460
rosa_chinensis RchiOBHm_Chr2g0102851
rosa_laevigata RLG00000017184
rosa_multiflora Rmu_sc0000388.1_g000049
rosa_roxburghii Rroxscaffold_2G00140250
rosa_rugosa Rorug02G0110100
rosa_samantha Rh2AG158500 Rh2AG434100 Rh2BG164900 Rh2CG164600 Rh2CG419800 Rh2DG163700
rosa_wichuraiana Rw2G012330 Rw2G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 60, 234
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
ApoI RAATTY 2 cut(s) 60, 234
BmsI GCATC 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 1 cut(s) 137
Bst4CI ACNGT 4 cut(s) 49, 75, 292, 322
Bst6I CTCTTC 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 65, 325
Csp6I GTAC 1 cut(s) 318
CviJI RGCY 3 cut(s) 39, 81, 182
CviKI_1 RGCY 3 cut(s) 39, 81, 182
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 2 cut(s) 65, 325
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
FaiI YATR 2 cut(s) 248, 331
FaqI GGGAC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 33, 318
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 2 cut(s) 33, 318
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 4 cut(s) 49, 75, 292, 322
HpyCH4V TGCA 2 cut(s) 4, 299
HpyF3I CTNAG 2 cut(s) 65, 325
LpnPI CCDG 1 cut(s) 150
LweI GCATC 1 cut(s) 222
MaeIII GTNAC 3 cut(s) 8, 163, 286
MboII GAAGA 1 cut(s) 109
MfeI CAATTG 1 cut(s) 300
MluCI AATT 5 cut(s) 60, 225, 234, 260, 300
MnlI CCTC 3 cut(s) 60, 125, 259
MseI TTAA 1 cut(s) 57
MunI CAATTG 1 cut(s) 300
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 57
SetI ASST 5 cut(s) 15, 41, 117, 172, 270
SfaNI GCATC 1 cut(s) 222
SgeI CNNG 7 cut(s) 29, 48, 55, 110, 149, 156, 186
Sse9I AATT 5 cut(s) 60, 225, 234, 260, 300
TaaI ACNGT 4 cut(s) 49, 75, 292, 322
TasI AATT 5 cut(s) 60, 225, 234, 260, 300
TatI WGTACW 1 cut(s) 317
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 81
XapI RAATTY 2 cut(s) 60, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.