RLG00000017184

Cold acclimation protein WCOR413

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013591
Physical Location & Seq
Forward (+)
13931299 .. 13932822
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017184

Sequence Viewer

Length: 489 bp
ATGGGTTTTGCTGAGTTCATGGGGTTTGAAGGGGGAGGAGTTGGATCCAGTGGAGCTCGTGATAGCTTTCAATGGGGTGGAACCATCTTTGCCTTAATTTTGCTAATCTTGAACCGAACAGGGCGCAGATCAGGCATGCAAAGTAACCTTCTTGTAATGTATTTGTTTACAAGCTTCCCGACAGTGTTGTTTAAAATTCTGAGGGGACAGTTCGGCTATTGGGTTTCATTTCTTGCTGTTTCTGCAAACCTCTTCTTTCCGCAAACTTTTCCAGTTTCTCGTTTCCTCCTATTTGTGGTCACACCTACTTGGGTGGCTAATGGACTGCGTGATGGTATTGTGGGTGGCATCTTTTGTCTAATTATTGGAGTTCTAGTTGTCATAACAGCGATTCAAGGAATTGGAGCAAAGAATGTATTCTTTGAGGACTTATACCCCATGCTGGGTCAGAGGCTCAAAGAAGCAGCCTTTAGAGAATGCCTATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WCOR413

Protein Analysis

163

Amino Acids

17.81

Weight (kDa)

9.5

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WCOR413 PF05562 20 - 138 4.2e-28 Cold acclimation protein WCOR413
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14181 FvH4_1g14252
malus_domestica MD15G1270400.v1.1
prunus_persica Prupe.7G147700_v2.0.a1
pyrus_communis pycom15g23460
rosa_chinensis RchiOBHm_Chr2g0102851
rosa_laevigata RLG00000017184
rosa_multiflora Rmu_sc0000388.1_g000049
rosa_roxburghii Rroxscaffold_2G00140250
rosa_rugosa Rorug02G0110100
rosa_samantha Rh2AG158500 Rh2AG434100 Rh2BG164900 Rh2CG164600 Rh2CG419800 Rh2DG163700
rosa_wichuraiana Rw2G012330 Rw2G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclWI GGATC 2 cut(s) 39, 52
AcsI RAATTY 1 cut(s) 195
AfiI CCNNNNNNNGG 3 cut(s) 295, 442, 443
AgsI TTSAA 4 cut(s) 29, 71, 112, 395
AluBI AGCT 3 cut(s) 56, 66, 174
AluI AGCT 3 cut(s) 56, 66, 174
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 2 cut(s) 39, 52
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 126
BamHI GGATCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 58
BauI CACGAG 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 476
BccI CCATC 2 cut(s) 92, 326
BfaI CTAG 1 cut(s) 374
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
BmiI GGNNCC 2 cut(s) 46, 82
BmsI GCATC 1 cut(s) 357
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 442, 443
Bse1I ACTGG 2 cut(s) 48, 272
BseLI CCNNNNNNNGG 3 cut(s) 295, 442, 443
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 48, 272
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 476
BseYI CCCAGC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 58
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 3 cut(s) 295, 442, 443
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 44, 128
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 4, 192
BspLI GGNNCC 2 cut(s) 46, 82
BspPI GGATC 2 cut(s) 39, 52
BsrI ACTGG 2 cut(s) 48, 272
BssMI GATC 2 cut(s) 44, 128
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 184, 210
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 12, 200
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 47, 131
BstMBI GATC 2 cut(s) 44, 128
BstMWI GCNNNNNNNGC 2 cut(s) 132, 242
BstNSI RCATGY 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 55, 189
Cac8I GCNNGC 1 cut(s) 137
CfoI GCGC 1 cut(s) 126
CviAII CATG 3 cut(s) 19, 136, 439
CviJI RGCY 7 cut(s) 56, 66, 174, 216, 317, 454, 467
CviKI_1 RGCY 7 cut(s) 56, 66, 174, 216, 317, 454, 467
DdeI CTNAG 2 cut(s) 12, 200
DpnI GATC 2 cut(s) 46, 130
DpnII GATC 2 cut(s) 44, 128
DraI TTTAAA 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 3 cut(s) 22, 139, 442
FaiI YATR 5 cut(s) 20, 137, 383, 433, 440
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 18, 135, 438
Fnu4HI GCNGC 1 cut(s) 465
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 465
GsaI CCCAGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 126
Hin1II CATG 3 cut(s) 22, 139, 442
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 201, 450
Hpy188III TCNNGA 3 cut(s) 59, 109, 178
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 23, 158
HpyCH4III ACNGT 2 cut(s) 184, 210
HpyCH4V TGCA 2 cut(s) 139, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 242
HpyF3I CTNAG 2 cut(s) 12, 200
Hsp92II CATG 3 cut(s) 22, 139, 442
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 44, 128
LmnI GCTCC 2 cut(s) 53, 404
LpnPI CCDG 5 cut(s) 61, 105, 117, 285, 428
Lsp1109I GCAGC 1 cut(s) 476
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 143, 298
MalI GATC 2 cut(s) 46, 130
MboI GATC 2 cut(s) 44, 128
MboII GAAGA 1 cut(s) 244
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 4 cut(s) 96, 195, 360, 399
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 6 cut(s) 29, 195, 260, 296, 418, 444
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 2 cut(s) 95, 192
Mva1269I GAATGC 1 cut(s) 482
MwoI GCNNNNNNNGC 2 cut(s) 132, 242
NdeII GATC 2 cut(s) 44, 128
NlaIII CATG 3 cut(s) 22, 139, 442
NlaIV GGNNCC 2 cut(s) 46, 82
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 1 cut(s) 139
PaeI GCATGC 1 cut(s) 139
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 46, 82
PsuI RGATCY 1 cut(s) 44
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 95, 192
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 2 cut(s) 44, 128
SduI GDGCHC 1 cut(s) 58
SetI ASST 6 cut(s) 58, 68, 150, 176, 252, 307
SfaNI GCATC 1 cut(s) 357
SphI GCATGC 1 cut(s) 139
Sse9I AATT 4 cut(s) 96, 195, 360, 399
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 1 cut(s) 58
TaaI ACNGT 2 cut(s) 184, 210
TasI AATT 4 cut(s) 96, 195, 360, 399
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 95, 192
Tru9I TTAA 2 cut(s) 95, 192
TscAI CASTG 2 cut(s) 55, 189
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 7, 216
TspRI CASTG 2 cut(s) 55, 189
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.