Rw2G012380

Cold acclimation protein WCOR413

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013591
Physical Location & Seq
Forward (+)
12884039 .. 12886012
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G012380.1

Sequence Viewer

Length: 582 bp
ATGGGTTTTGCTGAGTTCATGGGGTTTGAAGAAGGAGGAGGAGTTGGATCCAGTGGAGCTCGTGATAGCTTTCAATGGGGTGGAACTAGACCTTTTTTCTGTTTTGAATACATCTCTGACTTCACTCTTTTTGTGAATCTTACACTTTTATGCAGAATTTTGCTAATCTTGAACCGAACAGGGCGCAGATCAGGCATGCAAAGTAACCTTCTTGTAATGTATTTGTTTACAAGCTTCCCGACAGTGTTGTTTAAAATTCTGAGGGGACAGTTCGGCTATTGGGTTTCATTTCTTGCTGTTTCTGCAAACCTCTTCTTTCCGCAAACTTTTCCAGTTTCTCGTTTTCTCCTATTTGTGGTCACACCTTCTTGGGTGGCTAATGGACTGCGTGATAGTACTGCGGGTGGCATCTTTTGTCTAATTATTGGAGTTCTAGTTGTCATAACAGCGATTCAAGGAATTGGAGGTTTTAGTGATTGTTTTAGTAATTGTGAATGCAATTGTCATTGCTTTGCATACTGTCTTAGTATAGGATTTATCTTCTTCTTTACAATTTTGTATCTGTGCTCGGAAACTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WCOR413

Protein Analysis

193

Amino Acids

21.56

Weight (kDa)

6.52

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WCOR413 PF05562 49 - 165 3.6e-27 Cold acclimation protein WCOR413
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14181 FvH4_1g14252
malus_domestica MD15G1270400.v1.1
prunus_persica Prupe.7G147700_v2.0.a1
pyrus_communis pycom15g23460
rosa_chinensis RchiOBHm_Chr2g0102851
rosa_laevigata RLG00000017184
rosa_multiflora Rmu_sc0000388.1_g000049
rosa_roxburghii Rroxscaffold_2G00140250
rosa_rugosa Rorug02G0110100
rosa_samantha Rh2AG158500 Rh2AG434100 Rh2BG164900 Rh2CG164600 Rh2CG419800 Rh2DG163700
rosa_wichuraiana Rw2G012330 Rw2G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 320, 401
AclWI GGATC 2 cut(s) 42, 55
AcsI RAATTY 2 cut(s) 156, 255
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 5 cut(s) 29, 74, 107, 172, 455
AluBI AGCT 3 cut(s) 59, 69, 234
AluI AGCT 3 cut(s) 59, 69, 234
Alw21I GWGCWC 2 cut(s) 61, 569
AlwI GGATC 2 cut(s) 42, 55
ApoI RAATTY 2 cut(s) 156, 255
AspLEI GCGC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 61
BauI CACGAG 1 cut(s) 60
Bbv12I GWGCWC 2 cut(s) 61, 569
BfaI CTAG 2 cut(s) 87, 434
BmcAI AGTACT 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 417
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 420, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 51, 332
Bse3DI GCAATG 1 cut(s) 505
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 2 cut(s) 51, 332
BseRI GAGGAG 2 cut(s) 51, 54
BsiHKAI GWGCWC 2 cut(s) 61, 569
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 500
Bsp1286I GDGCHC 2 cut(s) 61, 569
Bsp143I GATC 2 cut(s) 47, 188
BspACI CCGC 2 cut(s) 320, 401
BspCNI CTCAG 2 cut(s) 4, 252
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 2 cut(s) 42, 55
BsrDI GCAATG 1 cut(s) 505
BsrI ACTGG 2 cut(s) 51, 332
BssMI GATC 2 cut(s) 47, 188
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 244, 270, 521
Bst6I CTCTTC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 12, 260, 524
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 2 cut(s) 50, 191
BstMBI GATC 2 cut(s) 47, 188
BstMWI GCNNNNNNNGC 2 cut(s) 192, 302
BstNSI RCATGY 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 58, 249
Cac8I GCNNGC 1 cut(s) 197
CfoI GCGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 396
CviAII CATG 2 cut(s) 19, 196
CviJI RGCY 5 cut(s) 59, 69, 234, 276, 377
CviKI_1 RGCY 5 cut(s) 59, 69, 234, 276, 377
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 3 cut(s) 12, 260, 524
DpnI GATC 2 cut(s) 49, 190
DpnII GATC 2 cut(s) 47, 188
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco53kI GAGCTC 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 59
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 2 cut(s) 22, 199
FaiI YATR 6 cut(s) 20, 151, 197, 443, 517, 530
FaqI GGGAC 1 cut(s) 279
FatI CATG 2 cut(s) 18, 195
FauI CCCGC 1 cut(s) 394
FriOI GRGCYC 1 cut(s) 61
FspBI CTAG 2 cut(s) 87, 434
GlaI GCGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 22, 199
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 2 cut(s) 136, 451
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 3 cut(s) 118, 261, 571
Hpy188III TCNNGA 3 cut(s) 62, 169, 238
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 3 cut(s) 26, 218, 375
HpyCH4III ACNGT 3 cut(s) 244, 270, 521
HpyCH4V TGCA 5 cut(s) 153, 199, 305, 498, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 302
HpyF3I CTNAG 3 cut(s) 12, 260, 524
Hsp92II CATG 2 cut(s) 22, 199
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 47, 188
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 64, 165, 177, 345
LweI GCATC 1 cut(s) 417
MaeI CTAG 2 cut(s) 87, 434
MaeIII GTNAC 2 cut(s) 203, 358
MalI GATC 2 cut(s) 49, 190
MboI GATC 2 cut(s) 47, 188
MboII GAAGA 4 cut(s) 41, 304, 532, 535
MfeI CAATTG 1 cut(s) 499
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 2 cut(s) 61, 569
MluCI AATT 7 cut(s) 156, 255, 420, 459, 487, 499, 552
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 5 cut(s) 29, 32, 255, 320, 458
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 148
MunI CAATTG 1 cut(s) 499
Mva1269I GAATGC 1 cut(s) 500
MwoI GCNNNNNNNGC 2 cut(s) 192, 302
NdeII GATC 2 cut(s) 47, 188
NlaIII CATG 2 cut(s) 22, 199
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 136, 451
Psp124BI GAGCTC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 1 cut(s) 148
SacI GAGCTC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 2 cut(s) 47, 188
ScaI AGTACT 1 cut(s) 397
SduI GDGCHC 2 cut(s) 61, 569
SetI ASST 8 cut(s) 61, 71, 94, 210, 236, 312, 367, 469
SfaNI GCATC 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 148
SphI GCATGC 1 cut(s) 199
Sse9I AATT 7 cut(s) 156, 255, 420, 459, 487, 499, 552
SsiI CCGC 2 cut(s) 320, 401
SspMI CTAG 2 cut(s) 87, 434
SstI GAGCTC 1 cut(s) 61
TaaI ACNGT 3 cut(s) 244, 270, 521
TasI AATT 7 cut(s) 156, 255, 420, 459, 487, 499, 552
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 2 cut(s) 136, 451
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 2 cut(s) 58, 249
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 7, 276
TspRI CASTG 2 cut(s) 58, 249
XapI RAATTY 2 cut(s) 156, 255
XceI RCATGY 1 cut(s) 199
XspI CTAG 2 cut(s) 87, 434
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.