Rroxscaffold_2G00140250

Cold acclimation protein WCOR413

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013591
Physical Location & Seq
Reverse (-)
78468171 .. 78469341
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140250.1

Sequence Viewer

Length: 255 bp
ATGGGTTTTGCTGAGTTCATGGGGTTTGAAGGAGGAGGAGGAGGAGTTGGATCCAGTGGAGCTCTTGATAGCTTTCAATGGGGTGGAACCATCTTTGCCTTAATTTTGCTAATCTTGAACCGAACAGGGCGCAGATCAGGCATGCAAAGTAACCTTCTTGTAATGTATTTGTTTACAAGCTTCCCGACAGTGTTGTTTAAAATTCTGAGTTTCTCGTTTTCTCCTATTTGTGGTCACACCTACTTGGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WCOR413

Protein Analysis

84

Amino Acids

8.94

Weight (kDa)

7.96

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WCOR413 PF05562 22 - 70 1.8e-08 Cold acclimation protein WCOR413
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14181 FvH4_1g14252
malus_domestica MD15G1270400.v1.1
prunus_persica Prupe.7G147700_v2.0.a1
pyrus_communis pycom15g23460
rosa_chinensis RchiOBHm_Chr2g0102851
rosa_laevigata RLG00000017184
rosa_multiflora Rmu_sc0000388.1_g000049
rosa_roxburghii Rroxscaffold_2G00140250
rosa_rugosa Rorug02G0110100
rosa_samantha Rh2AG158500 Rh2AG434100 Rh2BG164900 Rh2CG164600 Rh2CG419800 Rh2DG163700
rosa_wichuraiana Rw2G012330 Rw2G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 45, 58
AcsI RAATTY 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 3 cut(s) 29, 77, 118
AluBI AGCT 3 cut(s) 62, 72, 180
AluI AGCT 3 cut(s) 62, 72, 180
Alw21I GWGCWC 1 cut(s) 64
AlwI GGATC 2 cut(s) 45, 58
ApoI RAATTY 1 cut(s) 201
AspLEI GCGC 1 cut(s) 132
BamHI GGATCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 52, 88
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 4 cut(s) 48, 51, 54, 57
BsiHKAI GWGCWC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 50, 134
BspCNI CTCAG 2 cut(s) 4, 198
BspLI GGNNCC 2 cut(s) 52, 88
BspPI GGATC 2 cut(s) 45, 58
BsrI ACTGG 1 cut(s) 54
BssMI GATC 2 cut(s) 50, 134
Bst4CI ACNGT 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 12, 206
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 2 cut(s) 53, 137
BstMBI GATC 2 cut(s) 50, 134
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BtsIMutI CAGTG 2 cut(s) 61, 195
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 132
CviAII CATG 2 cut(s) 19, 142
CviJI RGCY 4 cut(s) 62, 72, 180, 252
CviKI_1 RGCY 4 cut(s) 62, 72, 180, 252
DdeI CTNAG 2 cut(s) 12, 206
DpnI GATC 2 cut(s) 52, 136
DpnII GATC 2 cut(s) 50, 134
DraI TTTAAA 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 64
FaeI CATG 2 cut(s) 22, 145
FaiI YATR 2 cut(s) 20, 143
FatI CATG 2 cut(s) 18, 141
FriOI GRGCYC 1 cut(s) 64
GlaI GCGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 132
Hin1II CATG 2 cut(s) 22, 145
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 3 cut(s) 65, 115, 184
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 23, 164
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 12, 206
Hsp92II CATG 2 cut(s) 22, 145
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 50, 134
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 3 cut(s) 67, 111, 123
MaeIII GTNAC 2 cut(s) 149, 233
MalI GATC 2 cut(s) 52, 136
MboI GATC 2 cut(s) 50, 134
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 2 cut(s) 102, 201
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 4 cut(s) 26, 29, 32, 35
MseI TTAA 2 cut(s) 101, 198
MwoI GCNNNNNNNGC 1 cut(s) 138
NdeII GATC 2 cut(s) 50, 134
NlaIII CATG 2 cut(s) 22, 145
NlaIV GGNNCC 2 cut(s) 52, 88
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 52, 88
PsuI RGATCY 1 cut(s) 50
SacI GAGCTC 1 cut(s) 64
SaqAI TTAA 2 cut(s) 101, 198
Sau3AI GATC 2 cut(s) 50, 134
SduI GDGCHC 1 cut(s) 64
SetI ASST 5 cut(s) 64, 74, 156, 182, 242
SphI GCATGC 1 cut(s) 145
Sse9I AATT 2 cut(s) 102, 201
SstI GAGCTC 1 cut(s) 64
TaaI ACNGT 1 cut(s) 190
TasI AATT 2 cut(s) 102, 201
Tru1I TTAA 2 cut(s) 101, 198
Tru9I TTAA 2 cut(s) 101, 198
TscAI CASTG 2 cut(s) 61, 195
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 2 cut(s) 61, 195
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.