Rh2AG434100

Cold acclimation protein WCOR413

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013591
Physical Location & Seq
Forward (+)
64389990 .. 64391368
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG434100.1

Sequence Viewer

Length: 417 bp
ATGGGTTTTGCTGAGTTCATGGGGTTTGAAGGAGGAGGAGTTGGATCCAGTGGAGCTCGTGAGAGCTTTCGATGGGTTGGAACCATCTTTGCCTTAATTTCGCTAATCTTGAACCGAACAGGGCGCAGATCAGGCATGCAAAGTAATCTTCTTGTAATGTTTTTGTTTACAAGCTTCCCGACAGTGTTGTTTAAGATTCTGAGGGGACAGTTCGGCTATTGGGTTTCATTTCTTGCTGTTTCTGCAAACCTCTTCTTTCCACAAACTTTTCCAGTTTCTCGTTTTCTCCTATTTGTGGTCACACCTACTTGGGTGGCTAATGGACTGCGTGATAGTATCGTGGGTGCCATCTGTTGTATAATTATTGGAGTTCTATCTGTCATAACAGCGATTCAAGAAAGTGGAGAAACTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WCOR413

Protein Analysis

138

Amino Acids

15.15

Weight (kDa)

9.49

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WCOR413 PF05562 20 - 136 1.1e-27 Cold acclimation protein WCOR413
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14181 FvH4_1g14252
malus_domestica MD15G1270400.v1.1
prunus_persica Prupe.7G147700_v2.0.a1
pyrus_communis pycom15g23460
rosa_chinensis RchiOBHm_Chr2g0102851
rosa_laevigata RLG00000017184
rosa_multiflora Rmu_sc0000388.1_g000049
rosa_roxburghii Rroxscaffold_2G00140250
rosa_rugosa Rorug02G0110100
rosa_samantha Rh2AG158500 Rh2AG434100 Rh2BG164900 Rh2CG164600 Rh2CG419800 Rh2DG163700
rosa_wichuraiana Rw2G012330 Rw2G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AclWI GGATC 2 cut(s) 39, 52
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 3 cut(s) 29, 112, 395
AluBI AGCT 3 cut(s) 56, 66, 174
AluI AGCT 3 cut(s) 56, 66, 174
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 2 cut(s) 39, 52
AspLEI GCGC 1 cut(s) 126
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 58
BauI CACGAG 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 58
BccI CCATC 3 cut(s) 66, 92, 356
BmiI GGNNCC 3 cut(s) 46, 82, 346
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 48, 272
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 48, 272
BseRI GAGGAG 2 cut(s) 48, 51
BshNI GGYRCC 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 58
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 44, 128
BspCNI CTCAG 2 cut(s) 4, 192
BspLI GGNNCC 3 cut(s) 46, 82, 346
BspPI GGATC 2 cut(s) 39, 52
BspT107I GGYRCC 1 cut(s) 344
BsrI ACTGG 2 cut(s) 48, 272
BssMI GATC 2 cut(s) 44, 128
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 184, 210
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 12, 200
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 47, 131
BstMBI GATC 2 cut(s) 44, 128
BstMWI GCNNNNNNNGC 2 cut(s) 132, 242
BstNSI RCATGY 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 55, 189
Cac8I GCNNGC 1 cut(s) 137
CfoI GCGC 1 cut(s) 126
CviAII CATG 2 cut(s) 19, 136
CviJI RGCY 5 cut(s) 56, 66, 174, 216, 317
CviKI_1 RGCY 5 cut(s) 56, 66, 174, 216, 317
DdeI CTNAG 2 cut(s) 12, 200
DpnI GATC 2 cut(s) 46, 130
DpnII GATC 2 cut(s) 44, 128
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 2 cut(s) 22, 139
FaiI YATR 4 cut(s) 20, 137, 359, 383
FaqI GGGAC 1 cut(s) 219
FatI CATG 2 cut(s) 18, 135
FriOI GRGCYC 1 cut(s) 58
GlaI GCGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 22, 139
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 2 cut(s) 196, 391
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 4 cut(s) 59, 109, 178, 395
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 2 cut(s) 184, 210
HpyCH4V TGCA 2 cut(s) 139, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 242
HpyF3I CTNAG 2 cut(s) 12, 200
Hsp92II CATG 2 cut(s) 22, 139
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 44, 128
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 4 cut(s) 61, 105, 117, 285
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 46, 130
MboI GATC 2 cut(s) 44, 128
MboII GAAGA 2 cut(s) 140, 244
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 96, 360
MmeI TCCRAC 2 cut(s) 22, 58
MnlI CCTC 4 cut(s) 26, 29, 195, 260
MseI TTAA 2 cut(s) 95, 192
MwoI GCNNNNNNNGC 2 cut(s) 132, 242
NdeII GATC 2 cut(s) 44, 128
NlaIII CATG 2 cut(s) 22, 139
NlaIV GGNNCC 3 cut(s) 46, 82, 346
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 1 cut(s) 139
PaeI GCATGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 196, 391
Psp124BI GAGCTC 1 cut(s) 58
PspN4I GGNNCC 3 cut(s) 46, 82, 346
PsuI RGATCY 1 cut(s) 44
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 95, 192
Sau3AI GATC 2 cut(s) 44, 128
SduI GDGCHC 1 cut(s) 58
SetI ASST 5 cut(s) 58, 68, 176, 252, 307
SphI GCATGC 1 cut(s) 139
Sse9I AATT 2 cut(s) 96, 360
SstI GAGCTC 1 cut(s) 58
TaaI ACNGT 2 cut(s) 184, 210
TaqI TCGA 1 cut(s) 70
TasI AATT 2 cut(s) 96, 360
TfiI GAWTC 2 cut(s) 196, 391
Tru1I TTAA 2 cut(s) 95, 192
Tru9I TTAA 2 cut(s) 95, 192
TscAI CASTG 2 cut(s) 55, 189
TseFI GTSAC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 7, 216
TspRI CASTG 2 cut(s) 55, 189
XceI RCATGY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.