Rw2G012330

Cold acclimation protein WCOR413

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013591
Physical Location & Seq
Forward (+)
12829279 .. 12831127
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G012330.1

Sequence Viewer

Length: 525 bp
ATGGGTTTTGCTGAGTTCATGGGGTTTGAAGAAGGAGGAGGAGTTGGATCCGGTGGAGCTCGTGATAGCTTTCAGTGGGGTGGAACCTTCTTTGCCTTAATTTTACTAATCTTGAACCGAACAGGGCGCAGATCAGGCATGCAAAGTAACCTTCTTGTAATGTATTTGTTTACAAGCTTCCCGACAGTGTTGTTTAAAATTCTGAGGGGACAGTTTGGCTATTGGGTTTCATTTCTTGCTGTTTCTGCAAACCTCTTCTTTCCGCAAACTTTTCCAGTTTCTCGTTTTCTCCTATTTGTGGTCACACCTTCTTGGGTGGCTAATGGACTGCGTGATAGTACTGTGGGTGGCATCTTTTGTCTAATTATTGGAGTTCTAGTTGTCATAACAGCGATTCAAGGAATTGGAGGTTTTAGTGATTGTTTTAGTAATTGTGAATGCAATTGTCATTGCTTTGCATACTGTCTTAGTATAGGATTTATCTTCTTCTTTACAATTTTGTATCTGTGCTCGGAAACTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WCOR413

Protein Analysis

174

Amino Acids

19.21

Weight (kDa)

6.52

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WCOR413 PF05562 19 - 146 3.3e-31 Cold acclimation protein WCOR413
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14181 FvH4_1g14252
malus_domestica MD15G1270400.v1.1
prunus_persica Prupe.7G147700_v2.0.a1
pyrus_communis pycom15g23460
rosa_chinensis RchiOBHm_Chr2g0102851
rosa_laevigata RLG00000017184
rosa_multiflora Rmu_sc0000388.1_g000049
rosa_roxburghii Rroxscaffold_2G00140250
rosa_rugosa Rorug02G0110100
rosa_samantha Rh2AG158500 Rh2AG434100 Rh2BG164900 Rh2CG164600 Rh2CG419800 Rh2DG163700
rosa_wichuraiana Rw2G012330 Rw2G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 263
AclWI GGATC 2 cut(s) 42, 55
AcsI RAATTY 1 cut(s) 198
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 3 cut(s) 29, 115, 398
AluBI AGCT 3 cut(s) 59, 69, 177
AluI AGCT 3 cut(s) 59, 69, 177
Alw21I GWGCWC 2 cut(s) 61, 512
AlwI GGATC 2 cut(s) 42, 55
ApoI RAATTY 1 cut(s) 198
AspLEI GCGC 1 cut(s) 129
BamHI GGATCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 61
BauI CACGAG 1 cut(s) 60
Bbv12I GWGCWC 2 cut(s) 61, 512
BfaI CTAG 1 cut(s) 377
BmcAI AGTACT 1 cut(s) 340
BmiI GGNNCC 2 cut(s) 49, 85
BmsI GCATC 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 363, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 448
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 51, 54
BsiHKAI GWGCWC 2 cut(s) 61, 512
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 61, 512
Bsp143I GATC 2 cut(s) 47, 131
BspACI CCGC 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 4, 195
BspLI GGNNCC 2 cut(s) 49, 85
BspPI GGATC 2 cut(s) 42, 55
BsrDI GCAATG 1 cut(s) 448
BsrI ACTGG 1 cut(s) 275
BssMI GATC 2 cut(s) 47, 131
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 187, 213, 343, 464
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 3 cut(s) 12, 203, 467
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 2 cut(s) 50, 134
BstMBI GATC 2 cut(s) 47, 131
BstMWI GCNNNNNNNGC 2 cut(s) 135, 245
BstNSI RCATGY 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 80, 192
Cac8I GCNNGC 1 cut(s) 140
CfoI GCGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 339
CviAII CATG 2 cut(s) 19, 139
CviJI RGCY 5 cut(s) 59, 69, 177, 219, 320
CviKI_1 RGCY 5 cut(s) 59, 69, 177, 219, 320
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 3 cut(s) 12, 203, 467
DpnI GATC 2 cut(s) 49, 133
DpnII GATC 2 cut(s) 47, 131
DraI TTTAAA 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco53kI GAGCTC 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 59
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 2 cut(s) 22, 142
FaiI YATR 5 cut(s) 20, 140, 386, 460, 473
FaqI GGGAC 1 cut(s) 222
FatI CATG 2 cut(s) 18, 138
FriOI GRGCYC 1 cut(s) 61
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 128
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 22, 142
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 1 cut(s) 394
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 204, 514
Hpy188III TCNNGA 3 cut(s) 62, 112, 181
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 4 cut(s) 26, 97, 161, 318
HpyCH4III ACNGT 4 cut(s) 187, 213, 343, 464
HpyCH4V TGCA 4 cut(s) 142, 248, 441, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 245
HpyF3I CTNAG 3 cut(s) 12, 203, 467
Hsp92II CATG 2 cut(s) 22, 142
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 47, 131
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 64, 108, 120, 288
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 377
MaeIII GTNAC 2 cut(s) 146, 301
MalI GATC 2 cut(s) 49, 133
MboI GATC 2 cut(s) 47, 131
MboII GAAGA 4 cut(s) 41, 247, 475, 478
MfeI CAATTG 1 cut(s) 442
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 2 cut(s) 61, 512
MluCI AATT 7 cut(s) 99, 198, 363, 402, 430, 442, 495
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 5 cut(s) 29, 32, 198, 263, 401
MseI TTAA 2 cut(s) 98, 195
MspI CCGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 442
Mva1269I GAATGC 1 cut(s) 443
MwoI GCNNNNNNNGC 2 cut(s) 135, 245
NdeII GATC 2 cut(s) 47, 131
NlaIII CATG 2 cut(s) 22, 142
NlaIV GGNNCC 2 cut(s) 49, 85
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 1 cut(s) 142
PaeI GCATGC 1 cut(s) 142
PctI GAATGC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 49, 85
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SacI GAGCTC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 98, 195
Sau3AI GATC 2 cut(s) 47, 131
ScaI AGTACT 1 cut(s) 340
SduI GDGCHC 2 cut(s) 61, 512
SetI ASST 8 cut(s) 61, 71, 89, 153, 179, 255, 310, 412
SfaNI GCATC 1 cut(s) 360
SphI GCATGC 1 cut(s) 142
Sse9I AATT 7 cut(s) 99, 198, 363, 402, 430, 442, 495
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 377
SstI GAGCTC 1 cut(s) 61
TaaI ACNGT 4 cut(s) 187, 213, 343, 464
TasI AATT 7 cut(s) 99, 198, 363, 402, 430, 442, 495
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 2 cut(s) 98, 195
Tru9I TTAA 2 cut(s) 98, 195
TscAI CASTG 2 cut(s) 80, 192
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 7, 219
TspRI CASTG 2 cut(s) 80, 192
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 142
XspI CTAG 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.