Rorug02G0110100

Cold acclimation protein WCOR413

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013591
Physical Location & Seq
Forward (+)
9459808 .. 9462554
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0110100.1

Sequence Viewer

Length: 1104 bp
ATGAAGTCCTCAAAGAAACACTACAAGGATAAAGTCGTTCGCCGCAAAATTTGGGAGAGGAGAACGCAGGGCAGCCGGAGCTGCCGAAATACAGAGACAGCTAAGGAGAGGAGGGATGATCAGAATCCGGATTATGAGGCCAATGAGCTGGGTTCTTTTCATGCCGTTGCGCCGCCGGGGAATGTTGATCTCGGGGCAGCTGATGTGCATAAGTTGTCAATCGAGAAGAGCAAGTATCTCGGAGGTGATCTGGAACACACGCATTTAGTGAAAGGATTGGATTATGCCTTACTTACCAAAGTAAGAAGTGAGATTGATAAGAAGCCAGATGTTGGAGACGAGGCTGATGCAAAATCTAGAGCATCCAAGGAAGACCAAAAAGTGTCATTTCGAACAGCAACTGCAAAGTCGGTGTATCAATGGATAGTTAAGCCCCAGACTGTTATCAAAACCAACGAGATGTTCCTGCCTGGTAGATTGTCATTCATTTTTAACATGGAGGGTGGATACACTCATGACATTCCTACGACTTGCATGGGAGTAAAGCTGACTGAAATGGCAACTCTCAGTTTTGATGGTGCTGTACCTGAAATTTTTTTTGCAAGTATGTCATATCTTCGTGTTGGATCTTCTGGGAAGGCTGCCAAGAAGAAAAAGAAGGGGAAAGATGCAAAAGGAAAGATTTTAGTTGGTAATGGATATGAGGAAGAGGATAAATCCTCGAAGCCTGATATTGGGGTTGTGAAGAATGAAACTAAAAGAGAGATTTTGCCCCCACCTCCACCTCTTCCCAGGAAAACTCATATAGATTCGCAAGAAAAACAAGGCCCAACTATTGCACGAGCAGATGAGGATGACATTTTTGTAGGTGATGGTGTTGACTATGCTATTCCTGGTAAAGATTTGAGCCAAAGCCCTCTATCTGAGGACATGGAAGAGTCTCCCAGGACCAAAGAAAAAGTTTCTTATTTTGATGAACCGGCTTATGGTCCTGTCCAACCCTATGGGCTGCCTAATGAATGGCAAGAAACGAATGGATACGATGCGACCACACAACAACCAATGGTTGGCCCCTACCAAGGAGACTGGCAGGAATACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WCOR413

Protein Analysis

367

Amino Acids

41.04

Weight (kDa)

6.44

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RED_N PF07808 31 - 219 6e-57 RED-like protein N-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14181 FvH4_1g14252
malus_domestica MD15G1270400.v1.1
prunus_persica Prupe.7G147700_v2.0.a1
pyrus_communis pycom15g23460
rosa_chinensis RchiOBHm_Chr2g0102851
rosa_laevigata RLG00000017184
rosa_multiflora Rmu_sc0000388.1_g000049
rosa_roxburghii Rroxscaffold_2G00140250
rosa_rugosa Rorug02G0110100
rosa_samantha Rh2AG158500 Rh2AG434100 Rh2BG164900 Rh2CG164600 Rh2CG419800 Rh2DG163700
rosa_wichuraiana Rw2G012330 Rw2G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 332, 1067
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 2 cut(s) 43, 173
AclWI GGATC 1 cut(s) 634
AcsI RAATTY 2 cut(s) 48, 591
AfaI GTAC 1 cut(s) 585
AfiI CCNNNNNNNGG 5 cut(s) 332, 734, 986, 1067, 1079
AjnI CCWGG 4 cut(s) 469, 791, 892, 944
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 5 cut(s) 81, 101, 148, 200, 547
AluI AGCT 5 cut(s) 81, 101, 148, 200, 547
Alw26I GTCTC 4 cut(s) 89, 330, 945, 1077
AlwI GGATC 1 cut(s) 634
AlwNI CAGNNNCTG 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 3 cut(s) 138, 826, 1069
ApeKI GCWGC 5 cut(s) 72, 81, 197, 641, 1009
ApoI RAATTY 2 cut(s) 48, 591
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 4 cut(s) 827, 948, 989, 1070
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 257, 881
AsuII TTCGAA 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 2 cut(s) 948, 989
BauI CACGAG 1 cut(s) 840
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 5 cut(s) 68, 84, 209, 628, 996
BccI CCATC 2 cut(s) 569, 866
BceAI ACGGC 1 cut(s) 149
BcgI CGANNNNNNTGC 4 cut(s) 220, 254, 329, 363
BciT130I CCWGG 4 cut(s) 471, 793, 894, 946
BciVI GTATCC 2 cut(s) 500, 1031
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 4 cut(s) 89, 330, 945, 1077
BfaI CTAG 1 cut(s) 357
BfuI GTATCC 2 cut(s) 500, 1031
BisI GCNGC 7 cut(s) 43, 73, 82, 173, 198, 642, 1010
BlsI GCNGC 7 cut(s) 44, 74, 83, 174, 199, 643, 1011
Bme1390I CCNGG 5 cut(s) 177, 471, 793, 894, 946
Bme18I GGWCC 2 cut(s) 948, 989
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 4 cut(s) 827, 948, 989, 1070
BmiI GGNNCC 1 cut(s) 1072
BmrFI CCNGG 5 cut(s) 177, 471, 793, 894, 946
BmsI GCATC 4 cut(s) 337, 371, 658, 1033
BpiI GAAGAC 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 5 cut(s) 176, 366, 791, 944, 1078
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 5 cut(s) 332, 734, 986, 1067, 1079
Bse118I RCCGGY 1 cut(s) 979
Bse1I ACTGG 1 cut(s) 1091
Bse8I GATNNNNATC 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 127
BseBI CCWGG 4 cut(s) 471, 793, 894, 946
BseDI CCNNGG 5 cut(s) 176, 366, 791, 944, 1078
BseGI GGATG 3 cut(s) 121, 362, 859
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 5 cut(s) 332, 734, 986, 1067, 1079
BseMII CTCAG 2 cut(s) 580, 915
BseNI ACTGG 1 cut(s) 1091
BseRI GAGGAG 2 cut(s) 73, 124
BseXI GCAGC 5 cut(s) 68, 84, 209, 628, 996
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 3 cut(s) 140, 828, 1071
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 4 cut(s) 76, 128, 176, 980
BslI CCNNNNNNNGG 5 cut(s) 332, 734, 986, 1067, 1079
BsmAI GTCTC 4 cut(s) 89, 330, 945, 1077
BsmBI CGTCTC 1 cut(s) 330
BsnI GGCC 3 cut(s) 140, 828, 1071
BsoBI CYCGRG 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 391
Bsp13I TCCGGA 1 cut(s) 127
Bsp143I GATC 4 cut(s) 118, 187, 247, 626
BspACI CCGC 2 cut(s) 43, 173
BspANI GGCC 3 cut(s) 140, 828, 1071
BspCNI CTCAG 2 cut(s) 579, 916
BspEI TCCGGA 1 cut(s) 127
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 1 cut(s) 1072
BspPI GGATC 1 cut(s) 634
BspQI GCTCTTC 1 cut(s) 221
BspT104I TTCGAA 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 979
BsrI ACTGG 1 cut(s) 1091
BssAI RCCGGY 1 cut(s) 979
BssECI CCNNGG 5 cut(s) 176, 366, 791, 944, 1078
BssMI GATC 4 cut(s) 118, 187, 247, 626
BssSI CACGAG 1 cut(s) 840
BssT1I CCWWGG 2 cut(s) 366, 1078
Bst2BI CACGAG 1 cut(s) 840
Bst2UI CCWGG 4 cut(s) 471, 793, 894, 946
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 4 cut(s) 221, 702, 792, 930
BstBI TTCGAA 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 102, 566, 924
BstF5I GGATG 3 cut(s) 121, 362, 859
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 4 cut(s) 121, 190, 250, 629
BstMAI GTCTC 4 cut(s) 89, 330, 945, 1077
BstMBI GATC 4 cut(s) 118, 187, 247, 626
BstMWI GCNNNNNNNGC 2 cut(s) 78, 81
BstNI CCWGG 4 cut(s) 471, 793, 894, 946
BstSCI CCNGG 5 cut(s) 175, 469, 791, 892, 944
BstV1I GCAGC 5 cut(s) 68, 84, 209, 628, 996
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 626
BstXI CCANNNNNNTGG 2 cut(s) 148, 1004
BstYI RGATCY 1 cut(s) 626
BsuI GTATCC 2 cut(s) 500, 1031
BsuRI GGCC 3 cut(s) 140, 828, 1071
BtsCI GGATG 3 cut(s) 121, 362, 859
CaiI CAGNNNCTG 1 cut(s) 401
CciI TCATGA 1 cut(s) 514
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 979
Cfr13I GGNCC 4 cut(s) 827, 948, 989, 1070
Csp6I GTAC 1 cut(s) 584
CviAII CATG 5 cut(s) 161, 496, 515, 535, 931
CviQI GTAC 1 cut(s) 584
DdeI CTNAG 3 cut(s) 102, 566, 924
DpnI GATC 4 cut(s) 120, 189, 249, 628
DpnII GATC 4 cut(s) 118, 187, 247, 626
Eam1104I CTCTTC 4 cut(s) 221, 702, 792, 930
EarI CTCTTC 4 cut(s) 221, 702, 792, 930
Eco130I CCWWGG 2 cut(s) 366, 1078
Eco47I GGWCC 2 cut(s) 948, 989
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 4 cut(s) 469, 791, 892, 944
EcoT14I CCWWGG 2 cut(s) 366, 1078
ErhI CCWWGG 2 cut(s) 366, 1078
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 5 cut(s) 164, 499, 518, 538, 934
FatI CATG 5 cut(s) 160, 495, 514, 534, 930
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 7 cut(s) 43, 73, 82, 173, 198, 642, 1010
FokI GGATG 3 cut(s) 128, 349, 866
Fsp4HI GCNGC 7 cut(s) 43, 73, 82, 173, 198, 642, 1010
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 171
GluI GCNGC 7 cut(s) 43, 73, 82, 173, 198, 642, 1010
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 3 cut(s) 140, 828, 1071
HapII CCGG 4 cut(s) 76, 128, 176, 980
HhaI GCGC 1 cut(s) 172
Hin1II CATG 5 cut(s) 164, 499, 518, 538, 934
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HinfI GANTC 3 cut(s) 124, 809, 938
HpaII CCGG 4 cut(s) 76, 128, 176, 980
HphI GGTGA 2 cut(s) 257, 881
Hpy166II GTNNAC 1 cut(s) 880
Hpy188I TCNGA 3 cut(s) 123, 242, 925
Hpy188III TCNNGA 5 cut(s) 128, 223, 251, 357, 515
Hpy8I GTNNAC 1 cut(s) 880
HpyAV CCTTC 2 cut(s) 631, 652
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 7 cut(s) 208, 350, 404, 534, 602, 671, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 81
HpyF3I CTNAG 3 cut(s) 102, 566, 924
Hsp92II CATG 5 cut(s) 164, 499, 518, 538, 934
HspAI GCGC 1 cut(s) 170
Kpn2I TCCGGA 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 118, 187, 247, 626
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 78
Lsp1109I GCAGC 5 cut(s) 68, 84, 209, 628, 996
LweI GCATC 4 cut(s) 337, 371, 658, 1033
MaeI CTAG 1 cut(s) 357
MalI GATC 4 cut(s) 120, 189, 249, 628
MboI GATC 4 cut(s) 118, 187, 247, 626
MboII GAAGA 9 cut(s) 238, 383, 608, 621, 661, 719, 757, 779, 947
MflI RGATCY 1 cut(s) 626
MluCI AATT 2 cut(s) 48, 591
MlyI GAGTC 1 cut(s) 947
MmeI TCCRAC 3 cut(s) 313, 604, 1021
MroI TCCGGA 1 cut(s) 127
MseI TTAA 2 cut(s) 429, 492
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 4 cut(s) 76, 128, 176, 980
MspR9I CCNGG 5 cut(s) 177, 471, 793, 894, 946
MvaI CCWGG 4 cut(s) 471, 793, 894, 946
MwoI GCNNNNNNNGC 2 cut(s) 78, 81
NciI CCSGG 1 cut(s) 177
NdeII GATC 4 cut(s) 118, 187, 247, 626
NlaIII CATG 5 cut(s) 164, 499, 518, 538, 934
NlaIV GGNNCC 1 cut(s) 1072
NspV TTCGAA 1 cut(s) 391
PagI TCATGA 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 124, 809
PflMI CCANNNNNTGG 2 cut(s) 332, 1067
PkrI GCNGC 7 cut(s) 44, 74, 83, 174, 199, 643, 1011
PleI GAGTC 1 cut(s) 946
PpsI GAGTC 1 cut(s) 946
Psp6I CCWGG 4 cut(s) 469, 791, 892, 944
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 4 cut(s) 469, 791, 892, 944
PspN4I GGNNCC 1 cut(s) 1072
PspPI GGNCC 4 cut(s) 827, 948, 989, 1070
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 1 cut(s) 626
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 585
RsaNI GTAC 1 cut(s) 584
SapI GCTCTTC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 429, 492
SatI GCNGC 7 cut(s) 43, 73, 82, 173, 198, 642, 1010
Sau3AI GATC 4 cut(s) 118, 187, 247, 626
Sau96I GGNCC 4 cut(s) 827, 948, 989, 1070
SchI GAGTC 1 cut(s) 947
ScrFI CCNGG 5 cut(s) 177, 471, 793, 894, 946
SfaNI GCATC 4 cut(s) 337, 371, 658, 1033
SfuI TTCGAA 1 cut(s) 391
SinI GGWCC 2 cut(s) 948, 989
Sse9I AATT 2 cut(s) 48, 591
SsiI CCGC 2 cut(s) 43, 173
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 5 cut(s) 175, 469, 791, 892, 944
StyI CCWWGG 2 cut(s) 366, 1078
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 3 cut(s) 222, 391, 722
TasI AATT 2 cut(s) 48, 591
TauI GCSGC 2 cut(s) 45, 175
TfiI GAWTC 2 cut(s) 124, 809
Tru1I TTAA 2 cut(s) 429, 492
Tru9I TTAA 2 cut(s) 429, 492
TseI GCWGC 5 cut(s) 72, 81, 197, 641, 1009
TspDTI ATGAA 6 cut(s) 17, 149, 475, 765, 990, 1032
Van91I CCANNNNNTGG 2 cut(s) 332, 1067
VpaK11BI GGWCC 2 cut(s) 948, 989
XapI RAATTY 2 cut(s) 48, 591
XbaI TCTAGA 1 cut(s) 356
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.