FvH4_1g15180

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016239
Physical Location & Seq
Reverse (-)
8611441 .. 8612791
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15180.t1

Sequence Viewer

Length: 1233 bp
ATGGAGCATATCCAGATTGCCACCGATGATTATCACCAGGAGGAGGAGGTTTCTTTCGTTGTGGATCAAAATTCCGGGTCGGATCGCACCGAATCCAAGCAGAGCGATGAAGATTCCGAGTATTGCGCTGATTCGAATACCACAGATGATCAGTTTGAGGTTTTCACCAGAAATGGGATGATGTTGAGGGTGAATGGATTGAGTGACGAATACGAGACTATTCTCAAGAGCTTTGGTGTTGGGATGGGATCGGCGGCAGGAGTTACAGAGGTTGTTGCGGTGCACAAGAATTTGGTTTCTGGATTGACCCGCCGGGCGAGGTTTGAAACATTTCGGGTGTTTTCACAGGCGGTGGGGAAGAAATGCGGCGGAAACCCGAACATTAGGTATGCTTGGTACAGCGGATCGAGAGATGAGATAGCTGATATTATGGTTCATGGGTTTAGTAATGTGAATGCTGATGAAGTTGGTGATGATGGGCTCAGGCATATGCTGCTGTGCCGTGTTATACTGGGGAAGATGGAAGAGGTGCCTAGTGGTTCTGGACAAGTTGTTCCTGGTTCGAATGAGTTTGATTCTGGTGTGGATAGTGTTGTGAATCCTCGAAGGTATTTTGTGTGGAGTCCATGCATGAACTCGCACATTTGTCCTGCTTATGTTGTGAGCTTCAAGGGTCCTGCTAGCTTGGAGGGTTATGTGACAAGTACTACTACTACTCAGACGGGGAGTATCACTCAGGGGAATGCTCGGTACAAGAGATCAGCGCTTGGACATGTTACTCTTGCAGCTCTGCTGGCCGCGCTGACGAGGTTCCTGACTCCTCGAGAAATGAAGATAGTTGTCAGATTGCTGCAGGATTTCAGGGCAAAGAAGTTTGACGCAGATGAGTTGAAGCGACAAGCGAGACTCATAGCTGGTGACAAGTTGATCTCGGCAATGAAATTGGCGGCTGTTATGGGGAGTAGTACTCTTGGTGGCTTGCAGTTGGAGAATGGATCAGTACGAGATGTATATCTACCTGGTCTGATAACCGTGCTTGCAGAGTTCTTGCCTGCTAAGAAGATTGAAATGCTTAGCAAAAGCCTTGGCGATTTCAAGGCTAAGAAGATAAATCGACCTCAGCTGGCTACAAGTGTGAAAGACATTGTAGACAATGACAATGTGTTGGTTGCAGCAATCAACTCTTACAGAATCAGTAAGCACCGGCCACAAGACAAGCAGTCAGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

411

Amino Acids

45.01

Weight (kDa)

6.48

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 259 - 311 5.1e-08 RCD1-SRO-TAF4 (RST) plant domain
RST PF12174 339 - 397 6.3e-08 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15180 FvH4_1g15250 FvH4_6g03610 FvH4_6g03610
rosa_chinensis RchiOBHm_Chr3g0452151
rosa_laevigata RLG00000025624
rosa_multiflora Rmu_sc0039908.1_g000001
rosa_roxburghii Rroxscaffold_164G00436040 Rroxscaffold_6G00429270
rosa_rugosa Rorug02G0638600
rosa_samantha Rh3AG040600 Rh3BG042100 Rh3CG040500 Rh3DG041400
rosa_wichuraiana Rw3G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 1149
AccII CGCG 1 cut(s) 800
AciI CCGC 9 cut(s) 254, 278, 310, 350, 366, 369, 402, 798, 947
AclWI GGATC 5 cut(s) 72, 90, 256, 412, 1003
AcoI YGGCCR 2 cut(s) 795, 1205
AcsI RAATTY 2 cut(s) 70, 289
AfaI GTAC 5 cut(s) 398, 706, 752, 967, 1002
AfeI AGCGCT 1 cut(s) 765
AfiI CCNNNNNNNGG 2 cut(s) 43, 174
AflIII ACRYGT 1 cut(s) 772
AgsI TTSAA 5 cut(s) 326, 670, 892, 1067, 1096
AhdI GACNNNNNGTC 1 cut(s) 1219
AjnI CCWGG 3 cut(s) 36, 556, 1018
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
AluBI AGCT 7 cut(s) 231, 422, 666, 684, 788, 914, 1123
AluI AGCT 7 cut(s) 231, 422, 666, 684, 788, 914, 1123
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 209, 898
Alw44I GTGCAC 1 cut(s) 281
AlwI GGATC 5 cut(s) 72, 90, 256, 412, 1003
Ama87I CYCGRG 1 cut(s) 822
Aor51HI AGCGCT 1 cut(s) 765
AoxI GGCC 2 cut(s) 795, 1205
ApaLI GTGCAC 1 cut(s) 281
ApeKI GCWGC 4 cut(s) 493, 785, 850, 1172
ApoI RAATTY 2 cut(s) 70, 289
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 3 cut(s) 128, 766, 802
AspS9I GGNCC 1 cut(s) 674
AsuC2I CCSGG 2 cut(s) 76, 314
AsuHPI GGTGA 5 cut(s) 26, 157, 202, 482, 929
AsuII TTCGAA 2 cut(s) 134, 563
AsuNHI GCTAGC 1 cut(s) 680
AvaI CYCGRG 1 cut(s) 822
AvaII GGWCC 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 1119
BbvI GCAGC 4 cut(s) 480, 797, 837, 1184
BccI CCATC 3 cut(s) 238, 470, 514
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 3 cut(s) 38, 558, 1020
BclI TGATCA 1 cut(s) 148
BcnI CCSGG 2 cut(s) 76, 314
BcoDI GTCTC 2 cut(s) 209, 898
BfaI CTAG 2 cut(s) 534, 681
BfmI CTRYAG 1 cut(s) 851
BfoI RGCGCY 1 cut(s) 767
BisI GCNGC 8 cut(s) 255, 367, 494, 786, 798, 851, 948, 1173
BlpI GCTNAGC 1 cut(s) 1073
BlsI GCNGC 8 cut(s) 256, 368, 495, 787, 799, 852, 949, 1174
BmcAI AGTACT 2 cut(s) 706, 967
Bme1390I CCNGG 5 cut(s) 38, 76, 314, 558, 1020
Bme18I GGWCC 1 cut(s) 674
BmeRI GACNNNNNGTC 1 cut(s) 1219
BmeT110I CYCGRG 1 cut(s) 822
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 3 cut(s) 531, 675, 812
BmrFI CCNGG 5 cut(s) 38, 76, 314, 558, 1020
BmrI ACTGGG 1 cut(s) 521
BmtI GCTAGC 1 cut(s) 684
BmuI ACTGGG 1 cut(s) 521
BplI GAGNNNNNCTC 4 cut(s) 718, 750, 952, 984
Bpu10I CCTNAGC 2 cut(s) 482, 1119
Bpu1102I GCTNAGC 1 cut(s) 1073
Bpu14I TTCGAA 2 cut(s) 134, 563
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 76, 314
BsaBI GATNNNNATC 2 cut(s) 30, 1011
BsaJI CCNNGG 1 cut(s) 1084
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 174
Bse118I RCCGGY 1 cut(s) 1203
Bse1I ACTGG 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 942
Bse8I GATNNNNATC 2 cut(s) 30, 1011
BseBI CCWGG 3 cut(s) 38, 558, 1020
BseDI CCNNGG 1 cut(s) 1084
BseGI GGATG 2 cut(s) 183, 249
BseJI GATNNNNATC 2 cut(s) 30, 1011
BseLI CCNNNNNNNGG 2 cut(s) 43, 174
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 4 cut(s) 496, 731, 749, 1133
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 3 cut(s) 56, 59, 810
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 4 cut(s) 480, 797, 837, 1184
Bsh1236I CGCG 1 cut(s) 800
BshFI GGCC 2 cut(s) 797, 1207
BshNI GGYRCC 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 822
BsiSI CCGG 3 cut(s) 75, 313, 1204
BslI CCNNNNNNNGG 2 cut(s) 43, 174
BsmAI GTCTC 2 cut(s) 209, 898
BsmI GAATGC 2 cut(s) 460, 748
BsnI GGCC 2 cut(s) 797, 1207
BsoBI CYCGRG 1 cut(s) 822
Bsp119I TTCGAA 2 cut(s) 134, 563
Bsp1286I GDGCHC 2 cut(s) 285, 483
Bsp143I GATC 8 cut(s) 64, 82, 148, 248, 404, 758, 927, 995
Bsp1720I GCTNAGC 1 cut(s) 1073
BspACI CCGC 9 cut(s) 254, 278, 310, 350, 366, 369, 402, 798, 947
BspANI GGCC 2 cut(s) 797, 1207
BspCNI CTCAG 4 cut(s) 495, 730, 748, 1132
BspFNI CGCG 1 cut(s) 800
BspLI GGNNCC 3 cut(s) 531, 675, 812
BspMAI CTGCAG 1 cut(s) 855
BspOI GCTAGC 1 cut(s) 684
BspPI GGATC 5 cut(s) 72, 90, 256, 412, 1003
BspT104I TTCGAA 2 cut(s) 134, 563
BspT107I GGYRCC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 942
BsrFI RCCGGY 1 cut(s) 1203
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 1203
BssECI CCNNGG 1 cut(s) 1084
BssMI GATC 8 cut(s) 64, 82, 148, 248, 404, 758, 927, 995
BssT1I CCWWGG 1 cut(s) 1084
Bst2UI CCWGG 3 cut(s) 38, 558, 1020
Bst4CI ACNGT 1 cut(s) 1033
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 493
BstBI TTCGAA 2 cut(s) 134, 563
BstC8I GCNNGC 6 cut(s) 682, 795, 980, 1038, 1053, 1125
BstDEI CTNAG 7 cut(s) 482, 717, 735, 1056, 1073, 1101, 1119
BstF5I GGATG 2 cut(s) 183, 249
BstFNI CGCG 1 cut(s) 800
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 3 cut(s) 128, 766, 802
BstKTI GATC 8 cut(s) 67, 85, 151, 251, 407, 761, 930, 998
BstMAI GTCTC 2 cut(s) 209, 898
BstMBI GATC 8 cut(s) 64, 82, 148, 248, 404, 758, 927, 995
BstMWI GCNNNNNNNGC 3 cut(s) 493, 794, 799
BstNI CCWGG 3 cut(s) 38, 558, 1020
BstNSI RCATGY 1 cut(s) 776
BstSCI CCNGG 5 cut(s) 36, 74, 312, 556, 1018
BstSFI CTRYAG 1 cut(s) 851
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 1 cut(s) 800
BstV1I GCAGC 4 cut(s) 480, 797, 837, 1184
BsuRI GGCC 2 cut(s) 797, 1207
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 2 cut(s) 183, 249
Cac8I GCNNGC 6 cut(s) 682, 795, 980, 1038, 1053, 1125
CfoI GCGC 3 cut(s) 128, 766, 802
Cfr10I RCCGGY 1 cut(s) 1203
Cfr13I GGNCC 1 cut(s) 674
CseI GACGC 1 cut(s) 887
CsiI ACCWGGT 1 cut(s) 1018
Csp6I GTAC 5 cut(s) 397, 705, 751, 966, 1001
CviAII CATG 4 cut(s) 437, 627, 631, 773
CviQI GTAC 5 cut(s) 397, 705, 751, 966, 1001
DdeI CTNAG 7 cut(s) 482, 717, 735, 1056, 1073, 1101, 1119
DpnI GATC 8 cut(s) 66, 84, 150, 250, 406, 760, 929, 997
DpnII GATC 8 cut(s) 64, 82, 148, 248, 404, 758, 927, 995
DriI GACNNNNNGTC 1 cut(s) 1219
EaeI YGGCCR 2 cut(s) 795, 1205
Eam1104I CTCTTC 1 cut(s) 519
Eam1105I GACNNNNNGTC 1 cut(s) 1219
EarI CTCTTC 1 cut(s) 519
EciI GGCGGA 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 1084
Eco24I GRGCYC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 674
Eco47III AGCGCT 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 822
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 3 cut(s) 36, 556, 1018
EcoT14I CCWWGG 1 cut(s) 1084
EcoT22I ATGCAT 1 cut(s) 632
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 1084
FaeI CATG 4 cut(s) 440, 630, 634, 776
FatI CATG 4 cut(s) 436, 626, 630, 772
FauI CCCGC 1 cut(s) 317
FauNDI CATATG 1 cut(s) 489
FbaI TGATCA 1 cut(s) 148
FblI GTMKAC 1 cut(s) 1149
Fnu4HI GCNGC 8 cut(s) 255, 367, 494, 786, 798, 851, 948, 1173
FokI GGATG 2 cut(s) 190, 256
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 8 cut(s) 255, 367, 494, 786, 798, 851, 948, 1173
FspBI CTAG 2 cut(s) 534, 681
GlaI GCGC 3 cut(s) 127, 765, 801
GluI GCNGC 8 cut(s) 255, 367, 494, 786, 798, 851, 948, 1173
HaeII RGCGCY 1 cut(s) 767
HaeIII GGCC 2 cut(s) 797, 1207
HapII CCGG 3 cut(s) 75, 313, 1204
HgaI GACGC 1 cut(s) 887
HhaI GCGC 3 cut(s) 128, 766, 802
Hin1II CATG 4 cut(s) 440, 630, 634, 776
Hin6I GCGC 3 cut(s) 126, 764, 800
HinP1I GCGC 3 cut(s) 126, 764, 800
HinfI GANTC 9 cut(s) 92, 113, 131, 575, 598, 622, 817, 906, 1191
HpaII CCGG 3 cut(s) 75, 313, 1204
HphI GGTGA 5 cut(s) 26, 157, 202, 482, 929
Hpy166II GTNNAC 2 cut(s) 283, 1150
Hpy188I TCNGA 5 cut(s) 82, 118, 720, 845, 1026
Hpy188III TCNNGA 7 cut(s) 13, 226, 300, 408, 543, 814, 824
Hpy8I GTNNAC 2 cut(s) 283, 1150
HpyAV CCTTC 1 cut(s) 600
HpyCH4III ACNGT 1 cut(s) 1033
HpyCH4V TGCA 7 cut(s) 283, 630, 785, 853, 982, 1040, 1172
HpyF10VI GCNNNNNNNGC 3 cut(s) 493, 794, 799
HpyF3I CTNAG 7 cut(s) 482, 717, 735, 1056, 1073, 1101, 1119
Hsp92II CATG 4 cut(s) 440, 630, 634, 776
HspAI GCGC 3 cut(s) 126, 764, 800
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 8 cut(s) 64, 82, 148, 248, 404, 758, 927, 995
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 4 cut(s) 480, 797, 837, 1184
MabI ACCWGGT 1 cut(s) 1018
MaeI CTAG 2 cut(s) 534, 681
MaeIII GTNAC 5 cut(s) 203, 262, 697, 775, 917
MalI GATC 8 cut(s) 66, 84, 150, 250, 406, 760, 929, 997
MboI GATC 8 cut(s) 64, 82, 148, 248, 404, 758, 927, 995
MboII GAAGA 7 cut(s) 122, 370, 529, 536, 844, 1072, 1117
MhlI GDGCHC 2 cut(s) 285, 483
MluCI AATT 3 cut(s) 70, 289, 941
MlyI GAGTC 3 cut(s) 631, 811, 900
MmeI TCCRAC 2 cut(s) 60, 966
Mph1103I ATGCAT 1 cut(s) 632
MroXI GAANNNNTTC 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 402, 1123
MspI CCGG 3 cut(s) 75, 313, 1204
MspR9I CCNGG 5 cut(s) 38, 76, 314, 558, 1020
Mva1269I GAATGC 2 cut(s) 460, 748
MvaI CCWGG 3 cut(s) 38, 558, 1020
MvnI CGCG 1 cut(s) 800
MwoI GCNNNNNNNGC 3 cut(s) 493, 794, 799
NciI CCSGG 2 cut(s) 76, 314
NdeI CATATG 1 cut(s) 489
NdeII GATC 8 cut(s) 64, 82, 148, 248, 404, 758, 927, 995
NheI GCTAGC 1 cut(s) 680
NlaIII CATG 4 cut(s) 440, 630, 634, 776
NlaIV GGNNCC 3 cut(s) 531, 675, 812
NmeAIII GCCGAG 1 cut(s) 911
NmuCI GTSAC 3 cut(s) 203, 697, 917
NsiI ATGCAT 1 cut(s) 632
NspI RCATGY 1 cut(s) 776
NspV TTCGAA 2 cut(s) 134, 563
PaeR7I CTCGAG 1 cut(s) 822
PciI ACATGT 1 cut(s) 772
PctI GAATGC 2 cut(s) 460, 748
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 6 cut(s) 92, 113, 131, 575, 598, 1191
PkrI GCNGC 8 cut(s) 256, 368, 495, 787, 799, 852, 949, 1174
PleI GAGTC 3 cut(s) 630, 811, 900
PpsI GAGTC 3 cut(s) 630, 811, 900
PpuMI RGGWCCY 1 cut(s) 674
PscI ACATGT 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 3 cut(s) 36, 556, 1018
PspGI CCWGG 3 cut(s) 36, 556, 1018
PspN4I GGNNCC 3 cut(s) 531, 675, 812
PspPI GGNCC 1 cut(s) 674
PspPPI RGGWCCY 1 cut(s) 674
PstI CTGCAG 1 cut(s) 855
PvuII CAGCTG 1 cut(s) 1123
RsaI GTAC 5 cut(s) 398, 706, 752, 967, 1002
RsaNI GTAC 5 cut(s) 397, 705, 751, 966, 1001
SatI GCNGC 8 cut(s) 255, 367, 494, 786, 798, 851, 948, 1173
Sau3AI GATC 8 cut(s) 64, 82, 148, 248, 404, 758, 927, 995
Sau96I GGNCC 1 cut(s) 674
ScaI AGTACT 2 cut(s) 706, 967
SchI GAGTC 3 cut(s) 631, 811, 900
ScrFI CCNGG 5 cut(s) 38, 76, 314, 558, 1020
SduI GDGCHC 2 cut(s) 285, 483
SexAI ACCWGGT 1 cut(s) 1018
SfcI CTRYAG 1 cut(s) 851
Sfr274I CTCGAG 1 cut(s) 822
SfuI TTCGAA 2 cut(s) 134, 563
SinI GGWCC 1 cut(s) 674
SlaI CTCGAG 1 cut(s) 822
SmlI CTYRAG 2 cut(s) 224, 822
SmoI CTYRAG 2 cut(s) 224, 822
Sse9I AATT 3 cut(s) 70, 289, 941
SsiI CCGC 9 cut(s) 254, 278, 310, 350, 366, 369, 402, 798, 947
SspMI CTAG 2 cut(s) 534, 681
StyD4I CCNGG 5 cut(s) 36, 74, 312, 556, 1018
StyI CCWWGG 1 cut(s) 1084
TaaI ACNGT 1 cut(s) 1033
TaqI TCGA 6 cut(s) 134, 407, 563, 604, 823, 1114
TasI AATT 3 cut(s) 70, 289, 941
TatI WGTACW 2 cut(s) 704, 965
TauI GCSGC 4 cut(s) 257, 369, 800, 950
TfiI GAWTC 6 cut(s) 92, 113, 131, 575, 598, 1191
TseFI GTSAC 3 cut(s) 203, 697, 917
TseI GCWGC 4 cut(s) 493, 785, 850, 1172
Tsp45I GTSAC 3 cut(s) 203, 697, 917
TspDTI ATGAA 6 cut(s) 123, 425, 477, 647, 845, 953
VneI GTGCAC 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 674
XapI RAATTY 2 cut(s) 70, 289
XceI RCATGY 1 cut(s) 776
XhoI CTCGAG 1 cut(s) 822
XmiI GTMKAC 1 cut(s) 1149
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 2 cut(s) 534, 681
ZrmI AGTACT 2 cut(s) 706, 967
Zsp2I ATGCAT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.