Rroxscaffold_6G00429270

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016239
Physical Location & Seq
Reverse (-)
49604502 .. 49606368
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429270.1

Sequence Viewer

Length: 1368 bp
ATGGAGCAGATCCAGATCGACACCGATGATTATCACCAGGAGGAGGAGGAGGAGGAGGTAACTATGATCGTTGAGGATCAAGATTCCGGGTCGGGTCGCCCCGAATCGAATCCTTCGGGTTCCGATTCCGATTCCGACTCCGGTGAGCAGAACGATGAAGATTCGGAGTCCGATTGCGAGAGCGATACCGCTGAATCGAATTCTACTGATAAATTTGGGGTTTTCACAGGAAATGGGATGATGTTCAGAGTGAATGATGTGAGTGAGGAGTACGAGAGTATTGCCAAGAGCTTTGCTGTGGGTATGGGACCGGCGGGAGGAGTAACGGAGGTTGTGGCGGTGCACAAGAAATCGATTTCTGGACTGACCGGCCGGGCCAGGTACGAAACGTTTCGGGTTTTTTCGGAGGCGGTGGGGAAGAAATGCGACGGAAACGCGAACATTAAGTTTGCTTGGTTCAGCGGATCGAGGGATGAGATTGTGGAGATAATGGATCATGGATTTAATAGTCGTAACGCGGATGAGTGTGGCCGGATTCAGTTGATTCCGGTTAAGTTTGCTTTGGATGGGGCGTTGGGCTTGGAGGTTGGTGATGATGGGCTCAGGCATATGCTGCTGTGCCGGGTTATATTGGGGAAGATGGAAGTGGTGCCTAGTGGTTCTCAACAAGGTGTTCCTGGCTCGAATGAGTTTGATTCTGGTGTGGATAGTGCTGTCAATCCTAGAAAGTTTTTTGTGTGGAGTGCATTCATGAACTCGCATATTCTTCCTGCTTATGTTGTGAGCTTCAAGGGTCCTGCTAGCTTGAAGGCTTATGTGAAGACTACTACTACTACTAAGGCGGCGAGTATTGCTAGTGCTATTACTCAGGGGAGTGCTGCCTACAAGAGAACAGGGCCTGGAGGTGTTACTCTTCCTGCTCTGGTGGCCGGGCTCACGAGGTTCTTGACTCCCCAAGAAATGAAGATTATTGTCAGATTGCTGGACGAATTCAAGGCAAAGAAGATTACAGGAGAGGAGCTGAAGCAAAAAGCGAGACTCATAGCCGGTGACAAGTTGATTTCAGCCTTGAAATTGATGTCATCGACTGTTAAGGGGAGTGGTACTGTTGGTGGAATGCAGCTGGAGAATGGATCAGTACGAGATATCTATCTCCCTGGTCTGATAACCGTGCTTGCAGGGTTGCTGCCTGCTCCGAAGACAGCCATGCTTAGTAAAAGCCTCAGCGATTTCAGGGCTAACAAGATAACTCGACATCAGCTGGCTCGAAGTGTGAGAATCATTGTTGGCAATGACAGTGTGTTGGTTTCAGCAATCAACTCCTACAGAATCAGTAAGCAGCAGCAGCAGCAGCAGCAAGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

455

Amino Acids

49.06

Weight (kDa)

5.33

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 303 - 355 3.7e-09 RCD1-SRO-TAF4 (RST) plant domain
RST PF12174 385 - 443 1.4e-10 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15180 FvH4_1g15250 FvH4_6g03610 FvH4_6g03610
rosa_chinensis RchiOBHm_Chr3g0452151
rosa_laevigata RLG00000025624
rosa_multiflora Rmu_sc0039908.1_g000001
rosa_roxburghii Rroxscaffold_164G00436040 Rroxscaffold_6G00429270
rosa_rugosa Rorug02G0638600
rosa_samantha Rh3AG040600 Rh3BG042100 Rh3CG040500 Rh3DG041400
rosa_wichuraiana Rw3G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 649
AccII CGCG 2 cut(s) 437, 518
AciI CCGC 7 cut(s) 189, 314, 338, 410, 462, 518, 842
AclI AACGTT 1 cut(s) 389
AclWI GGATC 5 cut(s) 4, 84, 472, 501, 1141
AcoI YGGCCR 3 cut(s) 370, 529, 927
AcsI RAATTY 3 cut(s) 199, 212, 989
AcuI CTGAAG 1 cut(s) 1043
AfaI GTAC 4 cut(s) 272, 383, 1105, 1140
AfiI CCNNNNNNNGG 2 cut(s) 43, 317
AgsI TTSAA 4 cut(s) 790, 808, 994, 1072
AjnI CCWGG 5 cut(s) 36, 377, 676, 898, 1156
AluBI AGCT 6 cut(s) 291, 786, 804, 1021, 1123, 1261
AluI AGCT 6 cut(s) 291, 786, 804, 1021, 1123, 1261
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 1030
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 5 cut(s) 4, 84, 472, 501, 1141
AlwNI CAGNNNCTG 1 cut(s) 899
AoxI GGCC 5 cut(s) 370, 375, 529, 896, 927
ApaLI GTGCAC 1 cut(s) 341
ApoI RAATTY 3 cut(s) 199, 212, 989
Asp700I GAANNNNTTC 1 cut(s) 390
AspS9I GGNCC 4 cut(s) 308, 375, 794, 896
AsuC2I CCSGG 4 cut(s) 88, 374, 623, 931
AsuHPI GGTGA 4 cut(s) 26, 155, 602, 1061
AsuNHI GCTAGC 1 cut(s) 800
AvaII GGWCC 2 cut(s) 308, 794
BaeGI GKGCMC 1 cut(s) 345
BanI GGYRCC 1 cut(s) 649
BanII GRGCYC 2 cut(s) 603, 936
BauI CACGAG 1 cut(s) 937
BbsI GAAGAC 2 cut(s) 827, 1205
Bbv12I GWGCWC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 1223
BbvI GCAGC 9 cut(s) 600, 865, 1132, 1173, 1351, 1354, 1357, 1360, 1363
BccI CCATC 3 cut(s) 560, 590, 634
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 5 cut(s) 38, 379, 678, 900, 1158
BcnI CCSGG 4 cut(s) 88, 374, 623, 931
BcoDI GTCTC 1 cut(s) 1030
BfaI CTAG 4 cut(s) 654, 723, 801, 855
BfmI CTRYAG 1 cut(s) 1324
Bme1390I CCNGG 9 cut(s) 38, 88, 374, 379, 623, 678, 900, 931, 1158
Bme18I GGWCC 2 cut(s) 308, 794
BmgT120I GGNCC 4 cut(s) 308, 375, 794, 896
BmiI GGNNCC 4 cut(s) 121, 309, 651, 795
BmrFI CCNGG 9 cut(s) 38, 88, 374, 379, 623, 678, 900, 931, 1158
BmtI GCTAGC 1 cut(s) 804
BpiI GAAGAC 2 cut(s) 827, 1205
BpmI CTGGAG 2 cut(s) 921, 1145
Bpu10I CCTNAGC 2 cut(s) 602, 1223
BpuMI CCSGG 4 cut(s) 88, 374, 623, 931
Bsa29I ATCGAT 1 cut(s) 353
BsaBI GATNNNNATC 3 cut(s) 14, 30, 1149
BsaJI CCNNGG 1 cut(s) 1156
BsaWI WCCGGW 2 cut(s) 140, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 317
Bse118I RCCGGY 3 cut(s) 310, 368, 1046
Bse3DI GCAATG 1 cut(s) 1297
Bse8I GATNNNNATC 3 cut(s) 14, 30, 1149
BseBI CCWGG 5 cut(s) 38, 379, 678, 900, 1158
BseCI ATCGAT 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 1156
BseGI GGATG 4 cut(s) 243, 478, 526, 571
BseJI GATNNNNATC 3 cut(s) 14, 30, 1149
BseLI CCNNNNNNNGG 2 cut(s) 43, 317
BseMI GCAATG 1 cut(s) 1297
BseMII CTCAG 3 cut(s) 616, 881, 1237
BseRI GAGGAG 8 cut(s) 56, 59, 62, 65, 68, 281, 333, 1031
BseSI GKGCMC 1 cut(s) 345
BseX3I CGGCCG 1 cut(s) 370
BseXI GCAGC 9 cut(s) 600, 865, 1132, 1173, 1351, 1354, 1357, 1360, 1363
Bsh1236I CGCG 2 cut(s) 437, 518
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 5 cut(s) 372, 377, 531, 898, 929
BshNI GGYRCC 1 cut(s) 649
BshVI ATCGAT 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 43, 317
BsmAI GTCTC 1 cut(s) 1030
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 2 cut(s) 746, 1122
BsnI GGCC 5 cut(s) 372, 377, 531, 898, 929
Bsp1286I GDGCHC 3 cut(s) 345, 603, 936
Bsp143I GATC 7 cut(s) 9, 15, 66, 76, 464, 493, 1133
BspACI CCGC 7 cut(s) 189, 314, 338, 410, 462, 518, 842
BspANI GGCC 5 cut(s) 372, 377, 531, 898, 929
BspCNI CTCAG 3 cut(s) 615, 880, 1236
BspDI ATCGAT 1 cut(s) 353
BspFNI CGCG 2 cut(s) 437, 518
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 4 cut(s) 121, 309, 651, 795
BspOI GCTAGC 1 cut(s) 804
BspPI GGATC 5 cut(s) 4, 84, 472, 501, 1141
BspT107I GGYRCC 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 1297
BsrFI RCCGGY 3 cut(s) 310, 368, 1046
BssAI RCCGGY 3 cut(s) 310, 368, 1046
BssECI CCNNGG 1 cut(s) 1156
BssMI GATC 7 cut(s) 9, 15, 66, 76, 464, 493, 1133
BssSI CACGAG 1 cut(s) 937
Bst2BI CACGAG 1 cut(s) 937
Bst2UI CCWGG 5 cut(s) 38, 379, 678, 900, 1158
Bst4CI ACNGT 4 cut(s) 1090, 1108, 1171, 1298
Bst6I CTCTTC 1 cut(s) 918
BstAPI GCANNNNNTGC 1 cut(s) 613
BstC8I GCNNGC 4 cut(s) 802, 1176, 1191, 1263
BstDEI CTNAG 5 cut(s) 602, 837, 867, 1211, 1223
BstF5I GGATG 4 cut(s) 243, 478, 526, 571
BstFNI CGCG 2 cut(s) 437, 518
BstKTI GATC 7 cut(s) 12, 18, 69, 79, 467, 496, 1136
BstMAI GTCTC 1 cut(s) 1030
BstMBI GATC 7 cut(s) 9, 15, 66, 76, 464, 493, 1133
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 7 cut(s) 613, 851, 926, 1345, 1348, 1351, 1354
BstNI CCWGG 5 cut(s) 38, 379, 678, 900, 1158
BstSCI CCNGG 9 cut(s) 36, 86, 372, 377, 621, 676, 898, 929, 1156
BstSFI CTRYAG 1 cut(s) 1324
BstSLI GKGCMC 1 cut(s) 345
BstUI CGCG 2 cut(s) 437, 518
BstV1I GCAGC 9 cut(s) 600, 865, 1132, 1173, 1351, 1354, 1357, 1360, 1363
BstV2I GAAGAC 2 cut(s) 827, 1205
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BstZI CGGCCG 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 353
BsuRI GGCC 5 cut(s) 372, 377, 531, 898, 929
BsuTUI ATCGAT 1 cut(s) 353
BtsCI GGATG 4 cut(s) 243, 478, 526, 571
BtsIMutI CAGTG 1 cut(s) 1303
Cac8I GCNNGC 4 cut(s) 802, 1176, 1191, 1263
CaiI CAGNNNCTG 1 cut(s) 899
CciI TCATGA 1 cut(s) 750
Cfr10I RCCGGY 3 cut(s) 310, 368, 1046
Cfr13I GGNCC 4 cut(s) 308, 375, 794, 896
ClaI ATCGAT 1 cut(s) 353
Csp6I GTAC 4 cut(s) 271, 382, 1104, 1139
CviAII CATG 3 cut(s) 497, 751, 1207
CviQI GTAC 4 cut(s) 271, 382, 1104, 1139
DdeI CTNAG 5 cut(s) 602, 837, 867, 1211, 1223
DpnI GATC 7 cut(s) 11, 17, 68, 78, 466, 495, 1135
DpnII GATC 7 cut(s) 9, 15, 66, 76, 464, 493, 1133
EaeI YGGCCR 3 cut(s) 370, 529, 927
EagI CGGCCG 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 918
EclXI CGGCCG 1 cut(s) 370
Eco24I GRGCYC 2 cut(s) 603, 936
Eco32I GATATC 1 cut(s) 1147
Eco47I GGWCC 2 cut(s) 308, 794
Eco52I CGGCCG 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 1043
EcoO109I RGGNCCY 2 cut(s) 794, 896
EcoRI GAATTC 2 cut(s) 199, 989
EcoRII CCWGG 5 cut(s) 36, 377, 676, 898, 1156
EcoRV GATATC 1 cut(s) 1147
EcoT38I GRGCYC 2 cut(s) 603, 936
FaeI CATG 3 cut(s) 500, 754, 1210
FaqI GGGAC 1 cut(s) 321
FatI CATG 3 cut(s) 496, 750, 1206
FauI CCCGC 1 cut(s) 307
FauNDI CATATG 1 cut(s) 609
FokI GGATG 4 cut(s) 250, 485, 533, 578
FriOI GRGCYC 2 cut(s) 603, 936
FspBI CTAG 4 cut(s) 654, 723, 801, 855
GsuI CTGGAG 2 cut(s) 921, 1145
HaeIII GGCC 5 cut(s) 372, 377, 531, 898, 929
Hin1II CATG 3 cut(s) 500, 754, 1210
HphI GGTGA 4 cut(s) 26, 155, 602, 1061
Hpy166II GTNNAC 1 cut(s) 343
Hpy188III TCNNGA 6 cut(s) 13, 80, 360, 751, 937, 946
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 2 cut(s) 123, 802
HpyCH4III ACNGT 4 cut(s) 1090, 1108, 1171, 1298
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 4 cut(s) 343, 746, 1120, 1178
HpyF10VI GCNNNNNNNGC 7 cut(s) 613, 851, 926, 1345, 1348, 1351, 1354
HpyF3I CTNAG 5 cut(s) 602, 837, 867, 1211, 1223
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 3 cut(s) 500, 754, 1210
Kzo9I GATC 7 cut(s) 9, 15, 66, 76, 464, 493, 1133
LmnI GCTCC 3 cut(s) 4, 1018, 1198
Lsp1109I GCAGC 9 cut(s) 600, 865, 1132, 1173, 1351, 1354, 1357, 1360, 1363
MaeI CTAG 4 cut(s) 654, 723, 801, 855
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 5 cut(s) 58, 322, 512, 907, 1049
MalI GATC 7 cut(s) 11, 17, 68, 78, 466, 495, 1135
MboI GATC 7 cut(s) 9, 15, 66, 76, 464, 493, 1133
MboII GAAGA 9 cut(s) 170, 430, 649, 758, 832, 905, 976, 1015, 1210
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 3 cut(s) 345, 603, 936
MluCI AATT 4 cut(s) 199, 212, 989, 1073
MlyI GAGTC 4 cut(s) 131, 176, 943, 1032
MmeI TCCRAC 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 4 cut(s) 444, 504, 552, 1092
MspA1I CMGCKG 4 cut(s) 191, 462, 1123, 1261
MspR9I CCNGG 9 cut(s) 38, 88, 374, 379, 623, 678, 900, 931, 1158
Mva1269I GAATGC 2 cut(s) 746, 1122
MvaI CCWGG 5 cut(s) 38, 379, 678, 900, 1158
MvnI CGCG 2 cut(s) 437, 518
MwoI GCNNNNNNNGC 7 cut(s) 613, 851, 926, 1345, 1348, 1351, 1354
NciI CCSGG 4 cut(s) 88, 374, 623, 931
NdeI CATATG 1 cut(s) 609
NdeII GATC 7 cut(s) 9, 15, 66, 76, 464, 493, 1133
NheI GCTAGC 1 cut(s) 800
NlaIII CATG 3 cut(s) 500, 754, 1210
NlaIV GGNNCC 4 cut(s) 121, 309, 651, 795
NmuCI GTSAC 1 cut(s) 1049
PagI TCATGA 1 cut(s) 750
PctI GAATGC 2 cut(s) 746, 1122
PdmI GAANNNNTTC 1 cut(s) 390
PleI GAGTC 4 cut(s) 131, 175, 943, 1032
PpsI GAGTC 4 cut(s) 131, 175, 943, 1032
PpuMI RGGWCCY 1 cut(s) 794
Psp1406I AACGTT 1 cut(s) 389
Psp5II RGGWCCY 1 cut(s) 794
Psp6I CCWGG 5 cut(s) 36, 377, 676, 898, 1156
PspGI CCWGG 5 cut(s) 36, 377, 676, 898, 1156
PspN4I GGNNCC 4 cut(s) 121, 309, 651, 795
PspPI GGNCC 4 cut(s) 308, 375, 794, 896
PspPPI RGGWCCY 1 cut(s) 794
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 1 cut(s) 9
PvuII CAGCTG 2 cut(s) 1123, 1261
RsaI GTAC 4 cut(s) 272, 383, 1105, 1140
RsaNI GTAC 4 cut(s) 271, 382, 1104, 1139
SaqAI TTAA 4 cut(s) 444, 504, 552, 1092
Sau3AI GATC 7 cut(s) 9, 15, 66, 76, 464, 493, 1133
Sau96I GGNCC 4 cut(s) 308, 375, 794, 896
SchI GAGTC 4 cut(s) 131, 176, 943, 1032
ScrFI CCNGG 9 cut(s) 38, 88, 374, 379, 623, 678, 900, 931, 1158
SduI GDGCHC 3 cut(s) 345, 603, 936
SfcI CTRYAG 1 cut(s) 1324
SinI GGWCC 2 cut(s) 308, 794
Sse9I AATT 4 cut(s) 199, 212, 989, 1073
SsiI CCGC 7 cut(s) 189, 314, 338, 410, 462, 518, 842
SspMI CTAG 4 cut(s) 654, 723, 801, 855
StyD4I CCNGG 9 cut(s) 36, 86, 372, 377, 621, 676, 898, 929, 1156
TaaI ACNGT 4 cut(s) 1090, 1108, 1171, 1298
TaiI ACGT 1 cut(s) 392
TaqI TCGA 9 cut(s) 18, 107, 197, 353, 467, 683, 1085, 1252, 1267
TasI AATT 4 cut(s) 199, 212, 989, 1073
TauI GCSGC 1 cut(s) 845
Tru1I TTAA 4 cut(s) 444, 504, 552, 1092
Tru9I TTAA 4 cut(s) 444, 504, 552, 1092
TscAI CASTG 1 cut(s) 1303
TseFI GTSAC 1 cut(s) 1049
Tsp45I GTSAC 1 cut(s) 1049
TspDTI ATGAA 4 cut(s) 171, 739, 767, 977
TspGWI ACGGA 2 cut(s) 341, 444
TspRI CASTG 1 cut(s) 1303
VneI GTGCAC 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 308, 794
XapI RAATTY 3 cut(s) 199, 212, 989
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 4 cut(s) 654, 723, 801, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.