RLG00000025624

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016239
Physical Location & Seq
Forward (+)
47148439 .. 47149794
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025624

Sequence Viewer

Length: 1356 bp
ATGGAGCAGATCCGGATTGACAGCGATGATTATCACCAGGAGGAGGAGGAGGAGGTTCCTATGATCGTTGAGGATCAGGATTCCGGGTCGGGTAGCCCCGAATCGAATCCTTCCGAGTCCGATTCCGACTCCGGTGAGCAGAACGATGAAGATTCGCAGTCCGATTGCGAGAGCGAAACCGCTGAATCGAATTCTGCTGATGAATTTGGGGCTTTCACCGGAAATGGGATGATGTTCAGAGTGAATGATGTGAGTGAGGAGTACGAGAGTATTGTCAGGAGCTTTGCGGTGGGTATGGGACCGGCGGCAGGAGTTACGGAGGTTGTGGCGGTGCACAAGAAATCGATTTCTGGGCTGACCGGCCGGGCCAGGTTCGAAACGTTTCGGGTTTTTTCGGAGGCGGTGGGGAAGAAATGCGACGGAAACGCGAACATTAAGTATGCTTGGTTCAGTGGATCGAGGGATGAGATTGTGGAGATAATGGATCGGGGATTTAATAGTCGTAATGCGGATGAGTGTGGCCGGATCCAGTTGATTCCGGTAAAGTTTGCTTTGGATGGGGCGTTGGGCTTGGAGGTTGGTGATGATGGGCTGAGGCATATGCTGCTGTGCCGGGTCATATTGGGGAAGATGGAAGTGGTGCCTAGCGGTTCTCAACAAGGTGTTCCTGGCTCGAATGGGTTTGATTCTGGTGTGGACAGTGTTGTGAATCCTAGAAAGTATTTTGTGTGGAGTCCATTCATGAACTCGCATATTCTTCCTGCTTATGTTGTGAGCTTCAAGGGTCCTGCTAGCTTGAAGGGTTATGTGAAGACTACTACAACTCAGGCGGCGAGCATTGCTAGTGCTATTACTCAGGGGAGTGCTCGATACAAGAGAGCAATGCCTGGACGTGTTACTGCTGCTGCTCTGGTGGCCGGGCTCACGAGGTTCTTGACTCCCCAAGAAATGAAGATTATTGTCAGATTGCTGGACGAATTCAAGGCAAAGAAGATTACAGGAGAGGAGCTGAAGCGAAAAGCAAGACTCGTAGCCGGTGACAAGTTGATTTCAGCCTTGAAATTGATGTCATCGACTGTTAAGGGGAGTGGTACTGTTGGTGGCTTGCAGCTGGAGAATGGATCAGTACGAGATATCTATCTCCCTGGTCTGATAACCGTGCTTGCAGGGTTGCTGCCTGCTCCGAAGACGGACATGCTTAATAAAAGCCTCGGCGATTTCAGGGCTAAGAAGATAACTCGACGTCAGCTGGCTCGATGTGTGAGAATCATTGTTGGCAATGACAGTGTGTTGGTTTCAGCAATCAAGTCCTACAGAATCAGTAAGCAGCAGCAGCAAGACAAGTCACCTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

452

Amino Acids

48.8

Weight (kDa)

5.83

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 302 - 351 4.4e-08 RCD1-SRO-TAF4 (RST) plant domain
RST PF12174 381 - 439 2.2e-10 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15180 FvH4_1g15250 FvH4_6g03610 FvH4_6g03610
rosa_chinensis RchiOBHm_Chr3g0452151
rosa_laevigata RLG00000025624
rosa_multiflora Rmu_sc0039908.1_g000001
rosa_roxburghii Rroxscaffold_164G00436040 Rroxscaffold_6G00429270
rosa_rugosa Rorug02G0638600
rosa_samantha Rh3AG040600 Rh3BG042100 Rh3CG040500 Rh3DG041400
rosa_wichuraiana Rw3G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1246
AccB1I GGYRCC 1 cut(s) 640
AccII CGCG 1 cut(s) 428
AccIII TCCGGA 1 cut(s) 12
AciI CCGC 8 cut(s) 180, 287, 305, 329, 401, 509, 648, 830
AclI AACGTT 1 cut(s) 380
AclWI GGATC 7 cut(s) 4, 81, 463, 492, 520, 533, 1129
AcoI YGGCCR 3 cut(s) 361, 520, 915
AcsI RAATTY 3 cut(s) 190, 203, 977
AcuI CTGAAG 1 cut(s) 1031
AcyI GRCGYC 1 cut(s) 1243
AfaI GTAC 3 cut(s) 263, 1093, 1128
AfiI CCNNNNNNNGG 3 cut(s) 43, 225, 308
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 4 cut(s) 781, 799, 982, 1060
AjiI CACGTC 1 cut(s) 893
AjnI CCWGG 5 cut(s) 36, 368, 667, 886, 1144
AleI CACNNNNGTG 1 cut(s) 1351
AluBI AGCT 6 cut(s) 282, 777, 795, 1009, 1111, 1249
AluI AGCT 6 cut(s) 282, 777, 795, 1009, 1111, 1249
Alw21I GWGCWC 2 cut(s) 336, 868
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 7 cut(s) 4, 81, 463, 492, 520, 533, 1129
Aor13HI TCCGGA 1 cut(s) 12
AoxI GGCC 4 cut(s) 361, 366, 520, 915
ApaLI GTGCAC 1 cut(s) 332
ApeKI GCWGC 8 cut(s) 604, 902, 905, 1108, 1174, 1327, 1330, 1333
ApoI RAATTY 3 cut(s) 190, 203, 977
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 3 cut(s) 299, 366, 785
AsuC2I CCSGG 4 cut(s) 85, 365, 614, 919
AsuHPI GGTGA 6 cut(s) 26, 146, 208, 593, 1049, 1338
AsuII TTCGAA 1 cut(s) 375
AsuNHI GCTAGC 1 cut(s) 791
AvaII GGWCC 2 cut(s) 299, 785
BaeGI GKGCMC 1 cut(s) 336
BamHI GGATCC 1 cut(s) 525
BanI GGYRCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 924
BauI CACGAG 1 cut(s) 925
BbsI GAAGAC 2 cut(s) 818, 1193
Bbv12I GWGCWC 2 cut(s) 336, 868
BbvCI CCTCAGC 1 cut(s) 593
BbvI GCAGC 8 cut(s) 591, 889, 892, 1120, 1161, 1339, 1342, 1345
BccI CCATC 3 cut(s) 551, 581, 625
BciT130I CCWGG 5 cut(s) 38, 370, 669, 888, 1146
BcnI CCSGG 4 cut(s) 85, 365, 614, 919
BfaI CTAG 4 cut(s) 645, 714, 792, 843
BfmI CTRYAG 1 cut(s) 1312
Bme1390I CCNGG 9 cut(s) 38, 85, 365, 370, 614, 669, 888, 919, 1146
Bme18I GGWCC 2 cut(s) 299, 785
BmgBI CACGTC 1 cut(s) 893
BmgT120I GGNCC 3 cut(s) 299, 366, 785
BmiI GGNNCC 5 cut(s) 57, 300, 527, 642, 786
BmrFI CCNGG 9 cut(s) 38, 85, 365, 370, 614, 669, 888, 919, 1146
BmtI GCTAGC 1 cut(s) 795
BpiI GAAGAC 2 cut(s) 818, 1193
BpmI CTGGAG 1 cut(s) 1133
Bpu10I CCTNAGC 1 cut(s) 593
Bpu14I TTCGAA 1 cut(s) 375
BpuMI CCSGG 4 cut(s) 85, 365, 614, 919
Bsa29I ATCGAT 1 cut(s) 344
BsaBI GATNNNNATC 2 cut(s) 30, 1137
BsaHI GRCGYC 1 cut(s) 1243
BsaJI CCNNGG 2 cut(s) 1144, 1210
BsaWI WCCGGW 4 cut(s) 12, 131, 218, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 225, 308
Bse118I RCCGGY 3 cut(s) 301, 359, 1034
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 3 cut(s) 837, 888, 1285
Bse8I GATNNNNATC 2 cut(s) 30, 1137
BseAI TCCGGA 1 cut(s) 12
BseBI CCWGG 5 cut(s) 38, 370, 669, 888, 1146
BseCI ATCGAT 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 1144, 1210
BseGI GGATG 4 cut(s) 234, 469, 517, 562
BseJI GATNNNNATC 2 cut(s) 30, 1137
BseLI CCNNNNNNNGG 3 cut(s) 43, 225, 308
BseMI GCAATG 3 cut(s) 837, 888, 1285
BseMII CTCAG 3 cut(s) 584, 839, 869
BseNI ACTGG 1 cut(s) 529
BseRI GAGGAG 6 cut(s) 56, 59, 62, 65, 272, 1019
BseSI GKGCMC 1 cut(s) 336
BseX3I CGGCCG 1 cut(s) 361
BseXI GCAGC 8 cut(s) 591, 889, 892, 1120, 1161, 1339, 1342, 1345
Bsh1236I CGCG 1 cut(s) 428
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 4 cut(s) 363, 368, 522, 917
BshNI GGYRCC 1 cut(s) 640
BshVI ATCGAT 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 2 cut(s) 336, 868
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 43, 225, 308
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 4 cut(s) 363, 368, 522, 917
Bsp119I TTCGAA 1 cut(s) 375
Bsp1286I GDGCHC 3 cut(s) 336, 868, 924
Bsp13I TCCGGA 1 cut(s) 12
Bsp143I GATC 7 cut(s) 9, 63, 73, 455, 484, 525, 1121
BspACI CCGC 8 cut(s) 180, 287, 305, 329, 401, 509, 648, 830
BspANI GGCC 4 cut(s) 363, 368, 522, 917
BspCNI CTCAG 3 cut(s) 585, 838, 868
BspDI ATCGAT 1 cut(s) 344
BspEI TCCGGA 1 cut(s) 12
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 1 cut(s) 741
BspLI GGNNCC 5 cut(s) 57, 300, 527, 642, 786
BspOI GCTAGC 1 cut(s) 795
BspPI GGATC 7 cut(s) 4, 81, 463, 492, 520, 533, 1129
BspT104I TTCGAA 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 640
BsrDI GCAATG 3 cut(s) 837, 888, 1285
BsrFI RCCGGY 3 cut(s) 301, 359, 1034
BsrI ACTGG 1 cut(s) 529
BssAI RCCGGY 3 cut(s) 301, 359, 1034
BssECI CCNNGG 2 cut(s) 1144, 1210
BssMI GATC 7 cut(s) 9, 63, 73, 455, 484, 525, 1121
BssNI GRCGYC 1 cut(s) 1243
BssSI CACGAG 1 cut(s) 925
Bst2BI CACGAG 1 cut(s) 925
Bst2UI CCWGG 5 cut(s) 38, 370, 669, 888, 1146
Bst4CI ACNGT 5 cut(s) 701, 1078, 1096, 1159, 1286
BstACI GRCGYC 1 cut(s) 1243
BstAPI GCANNNNNTGC 1 cut(s) 604
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 6 cut(s) 793, 835, 1106, 1164, 1179, 1251
BstDEI CTNAG 4 cut(s) 593, 825, 855, 1227
BstF5I GGATG 4 cut(s) 234, 469, 517, 562
BstFNI CGCG 1 cut(s) 428
BstKTI GATC 7 cut(s) 12, 66, 76, 458, 487, 528, 1124
BstMBI GATC 7 cut(s) 9, 63, 73, 455, 484, 525, 1121
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 4 cut(s) 604, 839, 914, 1333
BstNI CCWGG 5 cut(s) 38, 370, 669, 888, 1146
BstNSI RCATGY 1 cut(s) 1198
BstSCI CCNGG 9 cut(s) 36, 83, 363, 368, 612, 667, 886, 917, 1144
BstSFI CTRYAG 1 cut(s) 1312
BstSLI GKGCMC 1 cut(s) 336
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 8 cut(s) 591, 889, 892, 1120, 1161, 1339, 1342, 1345
BstV2I GAAGAC 2 cut(s) 818, 1193
BstX2I RGATCY 2 cut(s) 9, 525
BstYI RGATCY 2 cut(s) 9, 525
BstZI CGGCCG 1 cut(s) 361
Bsu15I ATCGAT 1 cut(s) 344
BsuRI GGCC 4 cut(s) 363, 368, 522, 917
BsuTUI ATCGAT 1 cut(s) 344
BtgZI GCGATG 1 cut(s) 39
BtrI CACGTC 1 cut(s) 893
BtsCI GGATG 4 cut(s) 234, 469, 517, 562
BtsIMutI CAGTG 3 cut(s) 457, 706, 1291
Cac8I GCNNGC 6 cut(s) 793, 835, 1106, 1164, 1179, 1251
CciI TCATGA 1 cut(s) 741
Cfr10I RCCGGY 3 cut(s) 301, 359, 1034
Cfr13I GGNCC 3 cut(s) 299, 366, 785
ClaI ATCGAT 1 cut(s) 344
Csp6I GTAC 3 cut(s) 262, 1092, 1127
CviAII CATG 2 cut(s) 742, 1195
CviQI GTAC 3 cut(s) 262, 1092, 1127
DdeI CTNAG 4 cut(s) 593, 825, 855, 1227
DpnI GATC 7 cut(s) 11, 65, 75, 457, 486, 527, 1123
DpnII GATC 7 cut(s) 9, 63, 73, 455, 484, 525, 1121
EaeI YGGCCR 3 cut(s) 361, 520, 915
EagI CGGCCG 1 cut(s) 361
EclXI CGGCCG 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 924
Eco32I GATATC 1 cut(s) 1135
Eco47I GGWCC 2 cut(s) 299, 785
Eco52I CGGCCG 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 1031
EcoO109I RGGNCCY 1 cut(s) 785
EcoRI GAATTC 2 cut(s) 190, 977
EcoRII CCWGG 5 cut(s) 36, 368, 667, 886, 1144
EcoRV GATATC 1 cut(s) 1135
EcoT38I GRGCYC 1 cut(s) 924
FaeI CATG 2 cut(s) 745, 1198
FaqI GGGAC 1 cut(s) 312
FatI CATG 2 cut(s) 741, 1194
FauNDI CATATG 1 cut(s) 600
FokI GGATG 4 cut(s) 241, 476, 524, 569
FriOI GRGCYC 1 cut(s) 924
FspBI CTAG 4 cut(s) 645, 714, 792, 843
GsuI CTGGAG 1 cut(s) 1133
HaeIII GGCC 4 cut(s) 363, 368, 522, 917
Hin1I GRCGYC 1 cut(s) 1243
Hin1II CATG 2 cut(s) 745, 1198
HphI GGTGA 6 cut(s) 26, 146, 208, 593, 1049, 1338
Hpy166II GTNNAC 2 cut(s) 334, 697
Hpy188I TCNGA 9 cut(s) 115, 121, 127, 163, 239, 397, 965, 1152, 1185
Hpy188III TCNNGA 6 cut(s) 13, 77, 277, 742, 925, 934
Hpy8I GTNNAC 2 cut(s) 334, 697
Hpy99I CGWCG 2 cut(s) 422, 1245
HpyAV CCTTC 2 cut(s) 120, 793
HpyCH4III ACNGT 5 cut(s) 701, 1078, 1096, 1159, 1286
HpyCH4IV ACGT 3 cut(s) 380, 892, 1243
HpyCH4V TGCA 3 cut(s) 334, 1108, 1166
HpyF10VI GCNNNNNNNGC 4 cut(s) 604, 839, 914, 1333
HpyF3I CTNAG 4 cut(s) 593, 825, 855, 1227
HpySE526I ACGT 3 cut(s) 380, 892, 1243
Hsp92I GRCGYC 1 cut(s) 1243
Hsp92II CATG 2 cut(s) 745, 1198
Kpn2I TCCGGA 1 cut(s) 12
Kzo9I GATC 7 cut(s) 9, 63, 73, 455, 484, 525, 1121
LmnI GCTCC 4 cut(s) 4, 279, 1006, 1186
Lsp1109I GCAGC 8 cut(s) 591, 889, 892, 1120, 1161, 1339, 1342, 1345
MaeI CTAG 4 cut(s) 645, 714, 792, 843
MaeII ACGT 3 cut(s) 380, 892, 1243
MaeIII GTNAC 4 cut(s) 313, 895, 1037, 1344
MalI GATC 7 cut(s) 11, 65, 75, 457, 486, 527, 1123
MboI GATC 7 cut(s) 9, 63, 73, 455, 484, 525, 1121
MboII GAAGA 9 cut(s) 161, 421, 640, 749, 823, 964, 1003, 1198, 1243
MflI RGATCY 2 cut(s) 9, 525
MhlI GDGCHC 3 cut(s) 336, 868, 924
MluCI AATT 4 cut(s) 190, 203, 977, 1061
MlyI GAGTC 5 cut(s) 122, 125, 742, 931, 1020
MmeI TCCRAC 1 cut(s) 150
MroI TCCGGA 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 4 cut(s) 435, 495, 1080, 1200
MslI CAYNNNNRTG 1 cut(s) 1351
MspA1I CMGCKG 3 cut(s) 182, 1111, 1249
MspR9I CCNGG 9 cut(s) 38, 85, 365, 370, 614, 669, 888, 919, 1146
MvaI CCWGG 5 cut(s) 38, 370, 669, 888, 1146
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 4 cut(s) 604, 839, 914, 1333
NciI CCSGG 4 cut(s) 85, 365, 614, 919
NdeI CATATG 1 cut(s) 600
NdeII GATC 7 cut(s) 9, 63, 73, 455, 484, 525, 1121
NheI GCTAGC 1 cut(s) 791
NlaIII CATG 2 cut(s) 745, 1198
NlaIV GGNNCC 5 cut(s) 57, 300, 527, 642, 786
NmeAIII GCCGAG 1 cut(s) 1191
NmuCI GTSAC 2 cut(s) 1037, 1344
NspI RCATGY 1 cut(s) 1198
NspV TTCGAA 1 cut(s) 375
OliI CACNNNNGTG 1 cut(s) 1351
PagI TCATGA 1 cut(s) 741
PdmI GAANNNNTTC 1 cut(s) 381
PleI GAGTC 5 cut(s) 122, 124, 741, 931, 1020
PpsI GAGTC 5 cut(s) 122, 124, 741, 931, 1020
PpuMI RGGWCCY 1 cut(s) 785
Psp1406I AACGTT 1 cut(s) 380
Psp5II RGGWCCY 1 cut(s) 785
Psp6I CCWGG 5 cut(s) 36, 368, 667, 886, 1144
PspGI CCWGG 5 cut(s) 36, 368, 667, 886, 1144
PspN4I GGNNCC 5 cut(s) 57, 300, 527, 642, 786
PspPI GGNCC 3 cut(s) 299, 366, 785
PspPPI RGGWCCY 1 cut(s) 785
PsrI GAACNNNNNNTAC 2 cut(s) 431, 463
PsuI RGATCY 2 cut(s) 9, 525
PvuII CAGCTG 2 cut(s) 1111, 1249
RsaI GTAC 3 cut(s) 263, 1093, 1128
RsaNI GTAC 3 cut(s) 262, 1092, 1127
RseI CAYNNNNRTG 1 cut(s) 1351
SaqAI TTAA 4 cut(s) 435, 495, 1080, 1200
Sau3AI GATC 7 cut(s) 9, 63, 73, 455, 484, 525, 1121
Sau96I GGNCC 3 cut(s) 299, 366, 785
SchI GAGTC 5 cut(s) 122, 125, 742, 931, 1020
ScrFI CCNGG 9 cut(s) 38, 85, 365, 370, 614, 669, 888, 919, 1146
SduI GDGCHC 3 cut(s) 336, 868, 924
SfcI CTRYAG 1 cut(s) 1312
SfuI TTCGAA 1 cut(s) 375
SinI GGWCC 2 cut(s) 299, 785
SmiMI CAYNNNNRTG 1 cut(s) 1351
Sse9I AATT 4 cut(s) 190, 203, 977, 1061
SsiI CCGC 8 cut(s) 180, 287, 305, 329, 401, 509, 648, 830
SspMI CTAG 4 cut(s) 645, 714, 792, 843
StyD4I CCNGG 9 cut(s) 36, 83, 363, 368, 612, 667, 886, 917, 1144
TaaI ACNGT 5 cut(s) 701, 1078, 1096, 1159, 1286
TaiI ACGT 3 cut(s) 383, 895, 1246
TasI AATT 4 cut(s) 190, 203, 977, 1061
TauI GCSGC 2 cut(s) 308, 833
Tru1I TTAA 4 cut(s) 435, 495, 1080, 1200
Tru9I TTAA 4 cut(s) 435, 495, 1080, 1200
TscAI CASTG 3 cut(s) 457, 706, 1291
TseFI GTSAC 2 cut(s) 1037, 1344
TseI GCWGC 8 cut(s) 604, 902, 905, 1108, 1174, 1327, 1330, 1333
Tsp45I GTSAC 2 cut(s) 1037, 1344
TspDTI ATGAA 5 cut(s) 162, 216, 730, 758, 965
TspGWI ACGGA 3 cut(s) 332, 435, 1205
TspRI CASTG 3 cut(s) 457, 706, 1291
VneI GTGCAC 1 cut(s) 332
VpaK11BI GGWCC 2 cut(s) 299, 785
XapI RAATTY 3 cut(s) 190, 203, 977
XceI RCATGY 1 cut(s) 1198
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 4 cut(s) 645, 714, 792, 843
ZraI GACGTC 1 cut(s) 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.