Rmu_sc0039908.1_g000001

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039908.1
OG0016239
Physical Location & Seq
Forward (+)
1 .. 1134
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039908.1_g000001.1.cds

Sequence Viewer

Length: 1134 bp
ttcagagtgaatgatgtgagcgaggagtacgaggatattgtcacgagctttgctgtgggtatgggaccggcggcaggagttacgaaggttgtggcggcgcacaagaaatcgatttctgggccgaccggccgggccaggttcgaaacgtttcgggttttttcggaggcggtggggaagaaatgcgacggaaacgcgaacatcaagtatgcttggtacagcggatcgagggatgagattgtggagatagtggatcgtggatttagtagtcgtaatgcggatgagtgtggccggatccagctgattccggttaagtttgctttggatgcggcgttggtcttggaggctggtgatgatggtctcaggcatatgctgctgtgccgggttacattggggaagatggaagtggtgcctagtggttctcagcaaggtgttcctggctcgaatgagtttgattccggtgtggatagtgctgtgaatccgaggaagtattttgtgtggagtgcattcatgaactcgcatattcttcctgcttatgttgtgagcttcaagggtcctgctagcttgaaggcttatgtgaacactactgctactacttctcaggcggcgagtgttgctagtgctattactcaggggagtgctcgatataaagggcctggacgtgttactgctgctgctctggtggccgggctgacgaggttcttgactccgcaagaaatgaagattattgtcagattgctggacgaattcaaggcaaagaagattacaggagaggagctgaagcgaaaagcgagactcatagccggtgacaagttgatttcagccttgaaattgatgtcatcgactgttaaggggagcggtactactgttggtggtggaatgcagctggagaatggatcagtacgagatatctatctccctggtctgatgaccgtgcttgcagggttgctgcctgctccgaagacggcattgcttagtaaaagcctcggcgatttcagggctaagaagataactcgacgtcagctggctcgatgtgtaagaatcattgttggcaatgacagtgtgttggtttcagcaatcaaatcttacagaatccgtaagcagcagcagcagcagcaagacaagtcacctgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

377

Amino Acids

40.55

Weight (kDa)

9.85

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15180 FvH4_1g15250 FvH4_6g03610 FvH4_6g03610
rosa_chinensis RchiOBHm_Chr3g0452151
rosa_laevigata RLG00000025624
rosa_multiflora Rmu_sc0039908.1_g000001
rosa_roxburghii Rroxscaffold_164G00436040 Rroxscaffold_6G00429270
rosa_rugosa Rorug02G0638600
rosa_samantha Rh3AG040600 Rh3BG042100 Rh3CG040500 Rh3DG041400
rosa_wichuraiana Rw3G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1018
AccB1I GGYRCC 1 cut(s) 406
AccBSI CCGCTC 1 cut(s) 855
AccII CGCG 1 cut(s) 194
AciI CCGC 9 cut(s) 71, 95, 167, 219, 275, 326, 602, 707, 855
AclI AACGTT 1 cut(s) 146
AclWI GGATC 5 cut(s) 229, 258, 286, 299, 901
AcoI YGGCCR 3 cut(s) 127, 286, 681
AcsI RAATTY 1 cut(s) 743
AcuI CTGAAG 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 1015
AfaI GTAC 4 cut(s) 29, 215, 859, 900
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 658
AgsI TTSAA 4 cut(s) 547, 565, 748, 826
AjiI CACGTC 1 cut(s) 659
AjnI CCWGG 4 cut(s) 134, 433, 652, 916
AleI CACNNNNGTG 1 cut(s) 1129
AluBI AGCT 7 cut(s) 48, 298, 543, 561, 775, 883, 1021
AluI AGCT 7 cut(s) 48, 298, 543, 561, 775, 883, 1021
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 2 cut(s) 362, 784
AlwI GGATC 5 cut(s) 229, 258, 286, 299, 901
AoxI GGCC 6 cut(s) 119, 127, 132, 286, 650, 681
ApoI RAATTY 1 cut(s) 743
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 5 cut(s) 65, 119, 132, 551, 650
AsuC2I CCSGG 3 cut(s) 131, 380, 685
AsuHPI GGTGA 3 cut(s) 359, 815, 1116
AsuII TTCGAA 1 cut(s) 141
AsuNHI GCTAGC 1 cut(s) 557
AvaII GGWCC 2 cut(s) 65, 551
BaeI ACNNNNGTAYC 2 cut(s) 849, 882
BamHI GGATCC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 406
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 965
Bbv12I GWGCWC 1 cut(s) 640
BccI CCATC 2 cut(s) 347, 391
BceAI ACGGC 1 cut(s) 978
BciT130I CCWGG 4 cut(s) 136, 435, 654, 918
BcnI CCSGG 3 cut(s) 131, 380, 685
BcoDI GTCTC 2 cut(s) 362, 784
BfaI CTAG 3 cut(s) 411, 558, 615
Bme1390I CCNGG 7 cut(s) 131, 136, 380, 435, 654, 685, 918
Bme18I GGWCC 2 cut(s) 65, 551
BmgBI CACGTC 1 cut(s) 659
BmgT120I GGNCC 5 cut(s) 65, 119, 132, 551, 650
BmiI GGNNCC 4 cut(s) 66, 293, 408, 552
BmrFI CCNGG 7 cut(s) 131, 136, 380, 435, 654, 685, 918
BmsI GCATC 1 cut(s) 313
BmtI GCTAGC 1 cut(s) 561
BpiI GAAGAC 1 cut(s) 965
BpmI CTGGAG 1 cut(s) 905
Bpu14I TTCGAA 1 cut(s) 141
BpuMI CCSGG 3 cut(s) 131, 380, 685
Bsa29I ATCGAT 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 909
BsaHI GRCGYC 1 cut(s) 1015
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 479, 916, 982
BsaWI WCCGGW 2 cut(s) 304, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse118I RCCGGY 3 cut(s) 67, 125, 800
Bse3DI GCAATG 2 cut(s) 965, 1057
Bse8I GATNNNNATC 1 cut(s) 909
BseBI CCWGG 4 cut(s) 136, 435, 654, 918
BseCI ATCGAT 1 cut(s) 110
BseDI CCNNGG 3 cut(s) 479, 916, 982
BseGI GGATG 3 cut(s) 235, 283, 328
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 965, 1057
BseMII CTCAG 4 cut(s) 373, 434, 611, 641
BseRI GAGGAG 2 cut(s) 38, 785
BseX3I CGGCCG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 194
Bsh1285I CGRYCG 2 cut(s) 126, 130
BshFI GGCC 6 cut(s) 121, 129, 134, 288, 652, 683
BshNI GGYRCC 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 110
BsiEI CGRYCG 2 cut(s) 126, 130
BsiHKAI GWGCWC 1 cut(s) 640
BsiSI CCGG 9 cut(s) 68, 126, 130, 289, 305, 379, 456, 684, 801
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 362, 784
BsmFI GGGAC 1 cut(s) 78
BsmI GAATGC 2 cut(s) 503, 882
BsnI GGCC 6 cut(s) 121, 129, 134, 288, 652, 683
Bso31I GGTCTC 1 cut(s) 362
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 4 cut(s) 221, 250, 291, 893
BspACI CCGC 9 cut(s) 71, 95, 167, 219, 275, 326, 602, 707, 855
BspANI GGCC 6 cut(s) 121, 129, 134, 288, 652, 683
BspCNI CTCAG 4 cut(s) 372, 433, 610, 640
BspDI ATCGAT 1 cut(s) 110
BspFNI CGCG 1 cut(s) 194
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 4 cut(s) 66, 293, 408, 552
BspOI GCTAGC 1 cut(s) 561
BspPI GGATC 5 cut(s) 229, 258, 286, 299, 901
BspT104I TTCGAA 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 855
BsrDI GCAATG 2 cut(s) 965, 1057
BsrFI RCCGGY 3 cut(s) 67, 125, 800
BssAI RCCGGY 3 cut(s) 67, 125, 800
BssECI CCNNGG 3 cut(s) 479, 916, 982
BssMI GATC 4 cut(s) 221, 250, 291, 893
BssNI GRCGYC 1 cut(s) 1015
BssSI CACGAG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 43
Bst2UI CCWGG 4 cut(s) 136, 435, 654, 918
Bst4CI ACNGT 4 cut(s) 844, 865, 931, 1058
BstACI GRCGYC 1 cut(s) 1015
BstAPI GCANNNNNTGC 1 cut(s) 370
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 4 cut(s) 559, 936, 951, 1023
BstDEI CTNAG 6 cut(s) 359, 420, 597, 627, 971, 999
BstF5I GGATG 3 cut(s) 235, 283, 328
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 4 cut(s) 224, 253, 294, 896
BstMAI GTCTC 2 cut(s) 362, 784
BstMBI GATC 4 cut(s) 221, 250, 291, 893
BstMCI CGRYCG 2 cut(s) 126, 130
BstMWI GCNNNNNNNGC 7 cut(s) 323, 370, 611, 680, 1105, 1108, 1111
BstNI CCWGG 4 cut(s) 136, 435, 654, 918
BstSCI CCNGG 7 cut(s) 129, 134, 378, 433, 652, 683, 916
BstUI CGCG 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 965
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BstZI CGGCCG 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 110
BsuRI GGCC 6 cut(s) 121, 129, 134, 288, 652, 683
BsuTUI ATCGAT 1 cut(s) 110
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 3 cut(s) 235, 283, 328
BtsIMutI CAGTG 1 cut(s) 1063
Cac8I GCNNGC 4 cut(s) 559, 936, 951, 1023
CciI TCATGA 1 cut(s) 507
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 3 cut(s) 67, 125, 800
Cfr13I GGNCC 5 cut(s) 65, 119, 132, 551, 650
ClaI ATCGAT 1 cut(s) 110
Csp6I GTAC 4 cut(s) 28, 214, 858, 899
CviAII CATG 1 cut(s) 508
CviQI GTAC 4 cut(s) 28, 214, 858, 899
DdeI CTNAG 6 cut(s) 359, 420, 597, 627, 971, 999
DpnI GATC 4 cut(s) 223, 252, 293, 895
DpnII GATC 4 cut(s) 221, 250, 291, 893
EaeI YGGCCR 3 cut(s) 127, 286, 681
EagI CGGCCG 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 907
Eco47I GGWCC 2 cut(s) 65, 551
Eco52I CGGCCG 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 797
EcoO109I RGGNCCY 2 cut(s) 551, 650
EcoRI GAATTC 1 cut(s) 743
EcoRII CCWGG 4 cut(s) 134, 433, 652, 916
EcoRV GATATC 1 cut(s) 907
FaeI CATG 1 cut(s) 511
FaqI GGGAC 1 cut(s) 78
FatI CATG 1 cut(s) 507
FauNDI CATATG 1 cut(s) 366
FokI GGATG 3 cut(s) 242, 290, 335
FspBI CTAG 3 cut(s) 411, 558, 615
GlaI GCGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 905
HaeIII GGCC 6 cut(s) 121, 129, 134, 288, 652, 683
HapII CCGG 9 cut(s) 68, 126, 130, 289, 305, 379, 456, 684, 801
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 1015
Hin1II CATG 1 cut(s) 511
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 7 cut(s) 301, 452, 475, 703, 792, 1038, 1089
HpaII CCGG 9 cut(s) 68, 126, 130, 289, 305, 379, 456, 684, 801
HphI GGTGA 3 cut(s) 359, 815, 1116
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 6 cut(s) 5, 163, 480, 731, 924, 957
Hpy188III TCNNGA 3 cut(s) 43, 508, 700
Hpy8I GTNNAC 1 cut(s) 577
Hpy99I CGWCG 2 cut(s) 188, 1017
HpyAV CCTTC 2 cut(s) 79, 559
HpyCH4III ACNGT 4 cut(s) 844, 865, 931, 1058
HpyCH4IV ACGT 3 cut(s) 146, 658, 1015
HpyCH4V TGCA 3 cut(s) 503, 880, 938
HpyF10VI GCNNNNNNNGC 7 cut(s) 323, 370, 611, 680, 1105, 1108, 1111
HpyF3I CTNAG 6 cut(s) 359, 420, 597, 627, 971, 999
HpySE526I ACGT 3 cut(s) 146, 658, 1015
Hsp92I GRCGYC 1 cut(s) 1015
Hsp92II CATG 1 cut(s) 511
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 4 cut(s) 221, 250, 291, 893
LmnI GCTCC 3 cut(s) 772, 852, 958
LweI GCATC 1 cut(s) 313
MaeI CTAG 3 cut(s) 411, 558, 615
MaeII ACGT 3 cut(s) 146, 658, 1015
MaeIII GTNAC 6 cut(s) 40, 79, 382, 661, 803, 1122
MalI GATC 4 cut(s) 223, 252, 293, 895
MbiI CCGCTC 1 cut(s) 855
MboI GATC 4 cut(s) 221, 250, 291, 893
MboII GAAGA 7 cut(s) 187, 406, 515, 730, 769, 970, 1015
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 2 cut(s) 743, 827
MlyI GAGTC 2 cut(s) 697, 786
MnlI CCTC 9 cut(s) 16, 25, 157, 219, 334, 474, 687, 763, 992
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 2 cut(s) 309, 846
MslI CAYNNNNRTG 1 cut(s) 1129
MspA1I CMGCKG 4 cut(s) 219, 298, 883, 1021
MspI CCGG 9 cut(s) 68, 126, 130, 289, 305, 379, 456, 684, 801
MspR9I CCNGG 7 cut(s) 131, 136, 380, 435, 654, 685, 918
Mva1269I GAATGC 2 cut(s) 503, 882
MvaI CCWGG 4 cut(s) 136, 435, 654, 918
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 7 cut(s) 323, 370, 611, 680, 1105, 1108, 1111
NciI CCSGG 3 cut(s) 131, 380, 685
NdeI CATATG 1 cut(s) 366
NdeII GATC 4 cut(s) 221, 250, 291, 893
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 1 cut(s) 511
NlaIV GGNNCC 4 cut(s) 66, 293, 408, 552
NmeAIII GCCGAG 1 cut(s) 963
NmuCI GTSAC 3 cut(s) 40, 803, 1122
NspV TTCGAA 1 cut(s) 141
OliI CACNNNNGTG 1 cut(s) 1129
PagI TCATGA 1 cut(s) 507
PctI GAATGC 2 cut(s) 503, 882
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 5 cut(s) 301, 452, 475, 1038, 1089
PleI GAGTC 2 cut(s) 697, 786
PpsI GAGTC 2 cut(s) 697, 786
PpuMI RGGWCCY 1 cut(s) 551
Psp1406I AACGTT 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 551
Psp6I CCWGG 4 cut(s) 134, 433, 652, 916
PspGI CCWGG 4 cut(s) 134, 433, 652, 916
PspN4I GGNNCC 4 cut(s) 66, 293, 408, 552
PspPI GGNCC 5 cut(s) 65, 119, 132, 551, 650
PspPPI RGGWCCY 1 cut(s) 551
PsuI RGATCY 1 cut(s) 291
PvuII CAGCTG 3 cut(s) 298, 883, 1021
RsaI GTAC 4 cut(s) 29, 215, 859, 900
RsaNI GTAC 4 cut(s) 28, 214, 858, 899
RseI CAYNNNNRTG 1 cut(s) 1129
SaqAI TTAA 2 cut(s) 309, 846
Sau3AI GATC 4 cut(s) 221, 250, 291, 893
Sau96I GGNCC 5 cut(s) 65, 119, 132, 551, 650
SchI GAGTC 2 cut(s) 697, 786
ScrFI CCNGG 7 cut(s) 131, 136, 380, 435, 654, 685, 918
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 2 cut(s) 65, 551
SmiMI CAYNNNNRTG 1 cut(s) 1129
Sse9I AATT 2 cut(s) 743, 827
SsiI CCGC 9 cut(s) 71, 95, 167, 219, 275, 326, 602, 707, 855
SspMI CTAG 3 cut(s) 411, 558, 615
StyD4I CCNGG 7 cut(s) 129, 134, 378, 433, 652, 683, 916
TaaI ACNGT 4 cut(s) 844, 865, 931, 1058
TaiI ACGT 3 cut(s) 149, 661, 1018
TaqI TCGA 8 cut(s) 110, 141, 224, 440, 640, 839, 1012, 1027
TasI AATT 2 cut(s) 743, 827
TauI GCSGC 4 cut(s) 74, 98, 329, 605
TfiI GAWTC 5 cut(s) 301, 452, 475, 1038, 1089
Tru1I TTAA 2 cut(s) 309, 846
Tru9I TTAA 2 cut(s) 309, 846
TscAI CASTG 1 cut(s) 1063
TseFI GTSAC 3 cut(s) 40, 803, 1122
Tsp45I GTSAC 3 cut(s) 40, 803, 1122
TspDTI ATGAA 3 cut(s) 496, 524, 731
TspGWI ACGGA 2 cut(s) 201, 1082
TspRI CASTG 1 cut(s) 1063
VpaK11BI GGWCC 2 cut(s) 65, 551
XapI RAATTY 1 cut(s) 743
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 3 cut(s) 411, 558, 615
ZraI GACGTC 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.