Rroxscaffold_164G00436040

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0016239
Physical Location & Seq
Forward (+)
42335 .. 44572
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436040.1

Sequence Viewer

Length: 1494 bp
ATGGAGCAGATCCGGATCGACACCGATGATTATCACCAGGAGGAGGAGGAGGAGGTAATTATGATCGTTGAGGGTCAAGATTCCGGGTCGGGTCACCCCGAATCGAATCCTTCCGGTTCCGATTCCGATTCCGACTCCGGTGAGCAGAACGATGAAGATTCGGAGTCCGATTGCGAGAGCGATACCGCTGAATCGAATTCTACTGATAAATTTGGGGTTTTCACAGGAAATGGGATGATGTTCAGAGTGAATGATGTGAGTGAGGAGTACGAGAGTATTGCCAAGAGCTTTGCTGTGGGTATGGGACCGGCGGGAGGAGTTACGGAGGTTGTGGCGGTGCACAAGAAATCGATTTCTGGACTGACCGGCCGGGCCAGGTACGAAACGTTTCGGGTTTTTTCGGAGGCGGTGGGGAAGAAATGCGACGGAAACGCGAACATGAAGTTTGCTTGGTTCAGCGGATCGAGGGATGAGATTGTGGAGATAATGGATCACGGATTTAATAGTCGTAACGCGGATGAGTGTGGCCGGATTCAGTTGATTCCGGTTAAGTTTGCTTTGGATGGGGCGTTGGGCTTGGAGGTTGGAGATGATGGGCTCAGGCATATGCTGCTGTGCCGGGTTATATTGGGGAAGATGGAAGTGGTGCCTAGTGGTTCTCAACAAGGTGTTCCTGGCTCGAATGAGTTTGATTCTGGTGTGGATAGTGTTGTCAATCCTAGAAAGTTTTTTGTGTGGAGTGCATTCATGAACTCGCATATTCTTCCTGCTTATGTTGTGAGCTTCAAGGGTCCTGCTAGCTTGAAGGCTTATGTGAAGACTACTACTACTACTAAGGCGGCGAGTATTGCTAGTGCTATTACTCAGGGGAGTGCTGGCTACAAGAGAACAGGGCCTGGAGGTGTTACTCTTCCTGCTCTGGTGGCCGGGCTCACGAGGTTCTTGACTCCCCAAGAAATGAAGATTATTGTCAGATTGCTGGACGAATTCAAGGCAAAGAAGATTACAGGAGAGGAGCTGAAGCAAAAAGCGAGACTCATAGCCGGTGACAAGTTGATTTCAGCCTTGAAATTGATGTCATCGACTGTTAAGGGGAGTGGTACTGTTGGTGGAATGCAGCTGGAGAATGGATCAGTACGAGATATCTATCTCCCTGGTCTGATAACCGTGCTTGCAGGGTTGCTGCCTGCTCCGAAGACAGCCATGCTTAGTAAAAGCCTCAGCGATTTCAGGGCTAACAAGATAACTCGACATGAGCTGGCTCGAAGTGTGAGAATCATTGTTGGCAATGACAGTGTGTTGGTTTCAGCAATCAACTCCTACAGAATCAGTAAGCAGCAGCAGCAGCAGCAGCAAGACAAAAGCACCAATGGCTACATAATCAGCAACAACATCACCATTCTCACTTCTTCTTGGCAGCATCTCCAGCCTTTGCCTGCAAAAGCAATTATAATGTTAGCTAATGATGCAAAAGCAACTATAAACGTAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

497

Amino Acids

53.53

Weight (kDa)

5.65

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 302 - 354 4.2e-09 RCD1-SRO-TAF4 (RST) plant domain
RST PF12174 384 - 442 1.7e-10 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15180 FvH4_1g15250 FvH4_6g03610 FvH4_6g03610
rosa_chinensis RchiOBHm_Chr3g0452151
rosa_laevigata RLG00000025624
rosa_multiflora Rmu_sc0039908.1_g000001
rosa_roxburghii Rroxscaffold_164G00436040 Rroxscaffold_6G00429270
rosa_rugosa Rorug02G0638600
rosa_samantha Rh3AG040600 Rh3BG042100 Rh3CG040500 Rh3DG041400
rosa_wichuraiana Rw3G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1451
AccB1I GGYRCC 1 cut(s) 646
AccII CGCG 2 cut(s) 434, 515
AccIII TCCGGA 1 cut(s) 12
AciI CCGC 7 cut(s) 186, 311, 335, 407, 459, 515, 839
AclI AACGTT 1 cut(s) 386
AclWI GGATC 5 cut(s) 4, 23, 469, 498, 1138
AcoI YGGCCR 3 cut(s) 367, 526, 924
AcsI RAATTY 3 cut(s) 196, 209, 986
AcuI CTGAAG 1 cut(s) 1040
AfaI GTAC 4 cut(s) 269, 380, 1102, 1137
AfiI CCNNNNNNNGG 2 cut(s) 43, 314
AgsI TTSAA 4 cut(s) 787, 805, 991, 1069
AjnI CCWGG 5 cut(s) 36, 374, 673, 895, 1153
AluBI AGCT 8 cut(s) 288, 783, 801, 1018, 1120, 1258, 1460, 1491
AluI AGCT 8 cut(s) 288, 783, 801, 1018, 1120, 1258, 1460, 1491
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 1027
Alw44I GTGCAC 1 cut(s) 338
AlwI GGATC 5 cut(s) 4, 23, 469, 498, 1138
AlwNI CAGNNNCTG 1 cut(s) 896
Aor13HI TCCGGA 1 cut(s) 12
AoxI GGCC 5 cut(s) 367, 372, 526, 893, 924
ApaLI GTGCAC 1 cut(s) 338
ApoI RAATTY 3 cut(s) 196, 209, 986
Asp700I GAANNNNTTC 1 cut(s) 387
AspS9I GGNCC 4 cut(s) 305, 372, 791, 893
AsuC2I CCSGG 4 cut(s) 85, 371, 620, 928
AsuHPI GGTGA 5 cut(s) 26, 86, 152, 1058, 1387
AsuNHI GCTAGC 1 cut(s) 797
AvaII GGWCC 2 cut(s) 305, 791
BaeGI GKGCMC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 646
BanII GRGCYC 2 cut(s) 600, 933
BauI CACGAG 1 cut(s) 934
BbsI GAAGAC 2 cut(s) 824, 1202
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 1220
BccI CCATC 3 cut(s) 557, 587, 631
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 5 cut(s) 38, 376, 675, 897, 1155
BcnI CCSGG 4 cut(s) 85, 371, 620, 928
BcoDI GTCTC 1 cut(s) 1027
BfaI CTAG 4 cut(s) 651, 720, 798, 852
BfmI CTRYAG 1 cut(s) 1321
Bme1390I CCNGG 9 cut(s) 38, 85, 371, 376, 620, 675, 897, 928, 1155
Bme18I GGWCC 2 cut(s) 305, 791
BmgT120I GGNCC 4 cut(s) 305, 372, 791, 893
BmiI GGNNCC 4 cut(s) 118, 306, 648, 792
BmrFI CCNGG 9 cut(s) 38, 85, 371, 376, 620, 675, 897, 928, 1155
BmsI GCATC 2 cut(s) 1429, 1456
BmtI GCTAGC 1 cut(s) 801
BpiI GAAGAC 2 cut(s) 824, 1202
BpmI CTGGAG 3 cut(s) 918, 1142, 1409
Bpu10I CCTNAGC 2 cut(s) 599, 1220
BpuMI CCSGG 4 cut(s) 85, 371, 620, 928
Bsa29I ATCGAT 1 cut(s) 350
BsaBI GATNNNNATC 3 cut(s) 14, 30, 1146
BsaJI CCNNGG 1 cut(s) 1153
BsaWI WCCGGW 4 cut(s) 12, 113, 137, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 314
Bse118I RCCGGY 3 cut(s) 307, 365, 1043
Bse3DI GCAATG 1 cut(s) 1294
Bse8I GATNNNNATC 3 cut(s) 14, 30, 1146
BseAI TCCGGA 1 cut(s) 12
BseBI CCWGG 5 cut(s) 38, 376, 675, 897, 1155
BseCI ATCGAT 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 1153
BseGI GGATG 4 cut(s) 240, 475, 523, 568
BseJI GATNNNNATC 3 cut(s) 14, 30, 1146
BseLI CCNNNNNNNGG 2 cut(s) 43, 314
BseMI GCAATG 1 cut(s) 1294
BseMII CTCAG 3 cut(s) 613, 878, 1234
BseRI GAGGAG 7 cut(s) 56, 59, 62, 65, 278, 330, 1028
BseSI GKGCMC 1 cut(s) 342
BseX3I CGGCCG 1 cut(s) 367
Bsh1236I CGCG 2 cut(s) 434, 515
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 5 cut(s) 369, 374, 528, 895, 926
BshNI GGYRCC 1 cut(s) 646
BshVI ATCGAT 1 cut(s) 350
BsiEI CGRYCG 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 342
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 43, 314
BsmAI GTCTC 1 cut(s) 1027
BsmFI GGGAC 1 cut(s) 318
BsmI GAATGC 2 cut(s) 743, 1119
BsnI GGCC 5 cut(s) 369, 374, 528, 895, 926
Bsp1286I GDGCHC 3 cut(s) 342, 600, 933
Bsp13I TCCGGA 1 cut(s) 12
Bsp143I GATC 6 cut(s) 9, 15, 63, 461, 490, 1130
BspACI CCGC 7 cut(s) 186, 311, 335, 407, 459, 515, 839
BspANI GGCC 5 cut(s) 369, 374, 528, 895, 926
BspCNI CTCAG 3 cut(s) 612, 877, 1233
BspDI ATCGAT 1 cut(s) 350
BspEI TCCGGA 1 cut(s) 12
BspFNI CGCG 2 cut(s) 434, 515
BspHI TCATGA 1 cut(s) 747
BspLI GGNNCC 4 cut(s) 118, 306, 648, 792
BspOI GCTAGC 1 cut(s) 801
BspPI GGATC 5 cut(s) 4, 23, 469, 498, 1138
BspT107I GGYRCC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 1294
BsrFI RCCGGY 3 cut(s) 307, 365, 1043
BssAI RCCGGY 3 cut(s) 307, 365, 1043
BssECI CCNNGG 1 cut(s) 1153
BssMI GATC 6 cut(s) 9, 15, 63, 461, 490, 1130
BssSI CACGAG 1 cut(s) 934
Bst2BI CACGAG 1 cut(s) 934
Bst2UI CCWGG 5 cut(s) 38, 376, 675, 897, 1155
Bst4CI ACNGT 4 cut(s) 1087, 1105, 1168, 1295
Bst6I CTCTTC 1 cut(s) 915
BstAPI GCANNNNNTGC 1 cut(s) 610
BstC8I GCNNGC 6 cut(s) 799, 877, 1173, 1188, 1260, 1437
BstDEI CTNAG 5 cut(s) 599, 834, 864, 1208, 1220
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 4 cut(s) 240, 475, 523, 568
BstFNI CGCG 2 cut(s) 434, 515
BstKTI GATC 6 cut(s) 12, 18, 66, 464, 493, 1133
BstMAI GTCTC 1 cut(s) 1027
BstMBI GATC 6 cut(s) 9, 15, 63, 461, 490, 1130
BstMCI CGRYCG 1 cut(s) 370
BstNI CCWGG 5 cut(s) 38, 376, 675, 897, 1155
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 9 cut(s) 36, 83, 369, 374, 618, 673, 895, 926, 1153
BstSFI CTRYAG 1 cut(s) 1321
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 2 cut(s) 434, 515
BstV2I GAAGAC 2 cut(s) 824, 1202
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BstZI CGGCCG 1 cut(s) 367
Bsu15I ATCGAT 1 cut(s) 350
BsuRI GGCC 5 cut(s) 369, 374, 528, 895, 926
BsuTUI ATCGAT 1 cut(s) 350
BtsCI GGATG 4 cut(s) 240, 475, 523, 568
BtsIMutI CAGTG 1 cut(s) 1300
Cac8I GCNNGC 6 cut(s) 799, 877, 1173, 1188, 1260, 1437
CaiI CAGNNNCTG 1 cut(s) 896
CciI TCATGA 1 cut(s) 747
Cfr10I RCCGGY 3 cut(s) 307, 365, 1043
Cfr13I GGNCC 4 cut(s) 305, 372, 791, 893
ClaI ATCGAT 1 cut(s) 350
Csp6I GTAC 4 cut(s) 268, 379, 1101, 1136
CviAII CATG 4 cut(s) 439, 748, 1204, 1253
CviQI GTAC 4 cut(s) 268, 379, 1101, 1136
DdeI CTNAG 5 cut(s) 599, 834, 864, 1208, 1220
DpnI GATC 6 cut(s) 11, 17, 65, 463, 492, 1132
DpnII GATC 6 cut(s) 9, 15, 63, 461, 490, 1130
EaeI YGGCCR 3 cut(s) 367, 526, 924
EagI CGGCCG 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 915
EarI CTCTTC 1 cut(s) 915
EclXI CGGCCG 1 cut(s) 367
Eco24I GRGCYC 2 cut(s) 600, 933
Eco32I GATATC 1 cut(s) 1144
Eco47I GGWCC 2 cut(s) 305, 791
Eco52I CGGCCG 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 1040
Eco91I GGTNACC 1 cut(s) 92
EcoO109I RGGNCCY 2 cut(s) 791, 893
EcoO65I GGTNACC 1 cut(s) 92
EcoRI GAATTC 2 cut(s) 196, 986
EcoRII CCWGG 5 cut(s) 36, 374, 673, 895, 1153
EcoRV GATATC 1 cut(s) 1144
EcoT38I GRGCYC 2 cut(s) 600, 933
FaeI CATG 4 cut(s) 442, 751, 1207, 1256
FaqI GGGAC 1 cut(s) 318
FatI CATG 4 cut(s) 438, 747, 1203, 1252
FauI CCCGC 1 cut(s) 304
FauNDI CATATG 1 cut(s) 606
FokI GGATG 4 cut(s) 247, 482, 530, 575
FriOI GRGCYC 2 cut(s) 600, 933
FspBI CTAG 4 cut(s) 651, 720, 798, 852
GsuI CTGGAG 3 cut(s) 918, 1142, 1409
HaeIII GGCC 5 cut(s) 369, 374, 528, 895, 926
Hin1II CATG 4 cut(s) 442, 751, 1207, 1256
HphI GGTGA 5 cut(s) 26, 86, 152, 1058, 1387
Hpy166II GTNNAC 1 cut(s) 340
Hpy188III TCNNGA 6 cut(s) 13, 77, 357, 748, 934, 943
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 120, 799
HpyCH4III ACNGT 4 cut(s) 1087, 1105, 1168, 1295
HpyCH4IV ACGT 2 cut(s) 386, 1485
HpyCH4V TGCA 6 cut(s) 340, 743, 1117, 1175, 1439, 1469
HpyF3I CTNAG 5 cut(s) 599, 834, 864, 1208, 1220
HpySE526I ACGT 2 cut(s) 386, 1485
Hsp92II CATG 4 cut(s) 442, 751, 1207, 1256
Kpn2I TCCGGA 1 cut(s) 12
Kzo9I GATC 6 cut(s) 9, 15, 63, 461, 490, 1130
LmnI GCTCC 3 cut(s) 4, 1015, 1195
LweI GCATC 2 cut(s) 1429, 1456
MaeI CTAG 4 cut(s) 651, 720, 798, 852
MaeII ACGT 2 cut(s) 386, 1485
MaeIII GTNAC 5 cut(s) 92, 319, 509, 904, 1046
MalI GATC 6 cut(s) 11, 17, 65, 463, 492, 1132
MboI GATC 6 cut(s) 9, 15, 63, 461, 490, 1130
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 3 cut(s) 342, 600, 933
MluCI AATT 6 cut(s) 57, 196, 209, 986, 1070, 1446
MlyI GAGTC 4 cut(s) 128, 173, 940, 1029
MmeI TCCRAC 2 cut(s) 156, 565
MroI TCCGGA 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 3 cut(s) 501, 549, 1089
MspA1I CMGCKG 3 cut(s) 188, 459, 1120
MspR9I CCNGG 9 cut(s) 38, 85, 371, 376, 620, 675, 897, 928, 1155
Mva1269I GAATGC 2 cut(s) 743, 1119
MvaI CCWGG 5 cut(s) 38, 376, 675, 897, 1155
MvnI CGCG 2 cut(s) 434, 515
NciI CCSGG 4 cut(s) 85, 371, 620, 928
NdeI CATATG 1 cut(s) 606
NdeII GATC 6 cut(s) 9, 15, 63, 461, 490, 1130
NheI GCTAGC 1 cut(s) 797
NlaIII CATG 4 cut(s) 442, 751, 1207, 1256
NlaIV GGNNCC 4 cut(s) 118, 306, 648, 792
NmuCI GTSAC 2 cut(s) 92, 1046
PagI TCATGA 1 cut(s) 747
PctI GAATGC 2 cut(s) 743, 1119
PdmI GAANNNNTTC 1 cut(s) 387
PleI GAGTC 4 cut(s) 128, 172, 940, 1029
PpsI GAGTC 4 cut(s) 128, 172, 940, 1029
PpuMI RGGWCCY 1 cut(s) 791
PsiI TTATAA 1 cut(s) 1451
Psp1406I AACGTT 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 791
Psp6I CCWGG 5 cut(s) 36, 374, 673, 895, 1153
PspEI GGTNACC 1 cut(s) 92
PspGI CCWGG 5 cut(s) 36, 374, 673, 895, 1153
PspN4I GGNNCC 4 cut(s) 118, 306, 648, 792
PspPI GGNCC 4 cut(s) 305, 372, 791, 893
PspPPI RGGWCCY 1 cut(s) 791
PstNI CAGNNNCTG 1 cut(s) 896
PsuI RGATCY 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 1120
RsaI GTAC 4 cut(s) 269, 380, 1102, 1137
RsaNI GTAC 4 cut(s) 268, 379, 1101, 1136
SaqAI TTAA 3 cut(s) 501, 549, 1089
Sau3AI GATC 6 cut(s) 9, 15, 63, 461, 490, 1130
Sau96I GGNCC 4 cut(s) 305, 372, 791, 893
SchI GAGTC 4 cut(s) 128, 173, 940, 1029
ScrFI CCNGG 9 cut(s) 38, 85, 371, 376, 620, 675, 897, 928, 1155
SduI GDGCHC 3 cut(s) 342, 600, 933
SfaNI GCATC 2 cut(s) 1429, 1456
SfcI CTRYAG 1 cut(s) 1321
SinI GGWCC 2 cut(s) 305, 791
Sse9I AATT 6 cut(s) 57, 196, 209, 986, 1070, 1446
SsiI CCGC 7 cut(s) 186, 311, 335, 407, 459, 515, 839
SspMI CTAG 4 cut(s) 651, 720, 798, 852
StyD4I CCNGG 9 cut(s) 36, 83, 369, 374, 618, 673, 895, 926, 1153
TaaI ACNGT 4 cut(s) 1087, 1105, 1168, 1295
TaiI ACGT 2 cut(s) 389, 1488
TaqI TCGA 9 cut(s) 18, 104, 194, 350, 464, 680, 1082, 1249, 1264
TasI AATT 6 cut(s) 57, 196, 209, 986, 1070, 1446
TauI GCSGC 1 cut(s) 842
Tru1I TTAA 3 cut(s) 501, 549, 1089
Tru9I TTAA 3 cut(s) 501, 549, 1089
TscAI CASTG 1 cut(s) 1300
TseFI GTSAC 2 cut(s) 92, 1046
Tsp45I GTSAC 2 cut(s) 92, 1046
TspDTI ATGAA 5 cut(s) 168, 455, 736, 764, 974
TspGWI ACGGA 3 cut(s) 338, 441, 510
TspRI CASTG 1 cut(s) 1300
VneI GTGCAC 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 305, 791
XapI RAATTY 3 cut(s) 196, 209, 986
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 4 cut(s) 651, 720, 798, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.