Rh3AG040600

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016239
Physical Location & Seq
Reverse (-)
2742985 .. 2743731
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG040600.1

Sequence Viewer

Length: 747 bp
ATGGAAGTGGTGCCTAGTGGTTCTCAACAAGGTGTTCCTGGCTCGAATGAGTTTGATTCCGGTGTGGATAGTGCTGTGAATCCGAGGAAGTATTTTGTGTGGAGTGCATTCATGAACTCGCATATTCTTCCTGCTTATGTTGTGAGCTTCAAGGGTCCTGCTAGCTTGAAGGCTTATGTGAAGACTACTGCTACTACTTCTCAGGCGGCGAGTGTTGCTAGTGCTATTACTCAGGGGAGTGCTCGATACAAGAGAGCCATGCCTGGACGTGTTACTGCTGCTGCTCTGGTGGCCGGGCTCACGAGGTTCTTGACTCCCCAAGAAATGAAGATTATTGTCAGATTGCTGGACGAATTCAAGGCAAAGAAGATTACAGGAGAGGAGCTGAAGCGAAAAGCGAAACTCGTAGCCGGTGACAAGTTGATTTCAGCCTTGAAATTGATGTCATCTACTGTTAAGGGGAGCGGTACTGTTGGTGGTGGAATGCAGCTGGAGAATGGATCAGTACGAGATATCTATCTCCCTGGTCTGATGACCGTGCTTGCAGGGTTGCTGCCTGCTCCGAAGTCGGCCATGCTTAGTAAAAGCCTCCGCGATTTCAGGGCTAAGAAGATAACTCGACGTCAGCTGGCTCGATGTGTGAGAATCATTGTTGGCAATGACAGTGTGTTGGTTTCAGCAATCAAATCTTACAGAATCAGTAAGCAGCAGCAGCAGCAGCAGCAGCGAGACAAGTCACCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

248

Amino Acids

26.72

Weight (kDa)

10.44

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 94 - 143 7.2e-08 RCD1-SRO-TAF4 (RST) plant domain
RST PF12174 174 - 232 1.4e-10 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15180 FvH4_1g15250 FvH4_6g03610 FvH4_6g03610
rosa_chinensis RchiOBHm_Chr3g0452151
rosa_laevigata RLG00000025624
rosa_multiflora Rmu_sc0039908.1_g000001
rosa_roxburghii Rroxscaffold_164G00436040 Rroxscaffold_6G00429270
rosa_rugosa Rorug02G0638600
rosa_samantha Rh3AG040600 Rh3BG042100 Rh3CG040500 Rh3DG041400
rosa_wichuraiana Rw3G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 625
AccB1I GGYRCC 1 cut(s) 10
AccBSI CCGCTC 1 cut(s) 465
AccII CGCG 1 cut(s) 594
AciI CCGC 3 cut(s) 206, 465, 592
AclWI GGATC 1 cut(s) 508
AcoI YGGCCR 2 cut(s) 291, 570
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 622
AfaI GTAC 2 cut(s) 469, 507
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 4 cut(s) 151, 169, 358, 436
AjiI CACGTC 1 cut(s) 269
AjnI CCWGG 3 cut(s) 37, 262, 523
AleI CACNNNNGTG 1 cut(s) 742
AluBI AGCT 5 cut(s) 147, 165, 385, 490, 628
AluI AGCT 5 cut(s) 147, 165, 385, 490, 628
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 723
AlwI GGATC 1 cut(s) 508
AoxI GGCC 2 cut(s) 291, 570
ApoI RAATTY 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 425, 729
AsuNHI GCTAGC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 300
BauI CACGAG 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 244
BciT130I CCWGG 3 cut(s) 39, 264, 525
BcnI CCSGG 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 3 cut(s) 15, 162, 219
Bme1390I CCNGG 4 cut(s) 39, 264, 295, 525
Bme18I GGWCC 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 12, 156
BmrFI CCNGG 4 cut(s) 39, 264, 295, 525
BmtI GCTAGC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 516
BsaHI GRCGYC 1 cut(s) 622
BsaJI CCNNGG 2 cut(s) 83, 523
BsaWI WCCGGW 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 664
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 3 cut(s) 39, 264, 525
BseDI CCNNGG 2 cut(s) 83, 523
BseJI GATNNNNATC 1 cut(s) 516
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 2 cut(s) 215, 245
BseRI GAGGAG 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 2 cut(s) 293, 572
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 3 cut(s) 60, 294, 411
BsmAI GTCTC 1 cut(s) 723
BsmI GAATGC 2 cut(s) 107, 489
BsnI GGCC 2 cut(s) 293, 572
Bsp1286I GDGCHC 2 cut(s) 244, 300
Bsp143I GATC 1 cut(s) 500
BspACI CCGC 3 cut(s) 206, 465, 592
BspANI GGCC 2 cut(s) 293, 572
BspCNI CTCAG 2 cut(s) 214, 244
BspFNI CGCG 1 cut(s) 594
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 12, 156
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 508
BspT107I GGYRCC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 664
BsrFI RCCGGY 1 cut(s) 410
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 83, 523
BssMI GATC 1 cut(s) 500
BssNI GRCGYC 1 cut(s) 622
BssSI CACGAG 1 cut(s) 301
Bst2BI CACGAG 1 cut(s) 301
Bst2UI CCWGG 3 cut(s) 39, 264, 525
Bst4CI ACNGT 4 cut(s) 454, 472, 538, 665
BstACI GRCGYC 1 cut(s) 622
BstC8I GCNNGC 4 cut(s) 163, 543, 558, 630
BstDEI CTNAG 4 cut(s) 201, 231, 578, 606
BstFNI CGCG 1 cut(s) 594
BstKTI GATC 1 cut(s) 503
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 1 cut(s) 500
BstMWI GCNNNNNNNGC 7 cut(s) 215, 290, 712, 715, 718, 721, 724
BstNI CCWGG 3 cut(s) 39, 264, 525
BstSCI CCNGG 4 cut(s) 37, 262, 293, 523
BstUI CGCG 1 cut(s) 594
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 293, 572
BtrI CACGTC 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 670
Cac8I GCNNGC 4 cut(s) 163, 543, 558, 630
CciI TCATGA 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 468, 506
CviAII CATG 3 cut(s) 112, 259, 574
CviQI GTAC 2 cut(s) 468, 506
DdeI CTNAG 4 cut(s) 201, 231, 578, 606
DpnI GATC 1 cut(s) 502
DpnII GATC 1 cut(s) 500
EaeI YGGCCR 2 cut(s) 291, 570
Eco24I GRGCYC 1 cut(s) 300
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 3 cut(s) 37, 262, 523
EcoRV GATATC 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 3 cut(s) 115, 262, 577
FaiI YATR 6 cut(s) 113, 123, 138, 177, 260, 575
FatI CATG 3 cut(s) 111, 258, 573
FriOI GRGCYC 1 cut(s) 300
FspBI CTAG 3 cut(s) 15, 162, 219
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 2 cut(s) 293, 572
HapII CCGG 3 cut(s) 60, 294, 411
Hin1I GRCGYC 1 cut(s) 622
Hin1II CATG 3 cut(s) 115, 262, 577
HinfI GANTC 5 cut(s) 56, 79, 313, 645, 696
HpaII CCGG 3 cut(s) 60, 294, 411
HphI GGTGA 2 cut(s) 425, 729
Hpy188I TCNGA 4 cut(s) 84, 341, 531, 564
Hpy188III TCNNGA 3 cut(s) 112, 301, 310
Hpy99I CGWCG 1 cut(s) 624
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 4 cut(s) 454, 472, 538, 665
HpyCH4IV ACGT 2 cut(s) 268, 622
HpyCH4V TGCA 3 cut(s) 107, 487, 545
HpyF10VI GCNNNNNNNGC 7 cut(s) 215, 290, 712, 715, 718, 721, 724
HpyF3I CTNAG 4 cut(s) 201, 231, 578, 606
HpySE526I ACGT 2 cut(s) 268, 622
Hsp92I GRCGYC 1 cut(s) 622
Hsp92II CATG 3 cut(s) 115, 262, 577
Kzo9I GATC 1 cut(s) 500
LmnI GCTCC 3 cut(s) 382, 462, 565
MaeI CTAG 3 cut(s) 15, 162, 219
MaeII ACGT 2 cut(s) 268, 622
MaeIII GTNAC 3 cut(s) 271, 413, 735
MalI GATC 1 cut(s) 502
MbiI CCGCTC 1 cut(s) 465
MboI GATC 1 cut(s) 500
MboII GAAGA 5 cut(s) 119, 193, 340, 379, 622
MhlI GDGCHC 2 cut(s) 244, 300
MluCI AATT 2 cut(s) 353, 437
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 4 cut(s) 78, 297, 373, 599
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 742
MspA1I CMGCKG 2 cut(s) 490, 628
MspI CCGG 3 cut(s) 60, 294, 411
MspR9I CCNGG 4 cut(s) 39, 264, 295, 525
Mva1269I GAATGC 2 cut(s) 107, 489
MvaI CCWGG 3 cut(s) 39, 264, 525
MvnI CGCG 1 cut(s) 594
MwoI GCNNNNNNNGC 7 cut(s) 215, 290, 712, 715, 718, 721, 724
NciI CCSGG 1 cut(s) 295
NdeII GATC 1 cut(s) 500
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 3 cut(s) 115, 262, 577
NlaIV GGNNCC 2 cut(s) 12, 156
NmuCI GTSAC 2 cut(s) 413, 735
OliI CACNNNNGTG 1 cut(s) 742
PagI TCATGA 1 cut(s) 111
PctI GAATGC 2 cut(s) 107, 489
PfeI GAWTC 4 cut(s) 56, 79, 645, 696
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PpuMI RGGWCCY 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 3 cut(s) 37, 262, 523
PspGI CCWGG 3 cut(s) 37, 262, 523
PspN4I GGNNCC 2 cut(s) 12, 156
PspPI GGNCC 1 cut(s) 155
PspPPI RGGWCCY 1 cut(s) 155
PvuII CAGCTG 2 cut(s) 490, 628
RsaI GTAC 2 cut(s) 469, 507
RsaNI GTAC 2 cut(s) 468, 506
RseI CAYNNNNRTG 1 cut(s) 742
SaqAI TTAA 1 cut(s) 456
Sau3AI GATC 1 cut(s) 500
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 4 cut(s) 39, 264, 295, 525
SduI GDGCHC 2 cut(s) 244, 300
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 742
Sse9I AATT 2 cut(s) 353, 437
SsiI CCGC 3 cut(s) 206, 465, 592
SspMI CTAG 3 cut(s) 15, 162, 219
StyD4I CCNGG 4 cut(s) 37, 262, 293, 523
TaaI ACNGT 4 cut(s) 454, 472, 538, 665
TaiI ACGT 2 cut(s) 271, 625
TaqI TCGA 4 cut(s) 44, 244, 619, 634
TasI AATT 2 cut(s) 353, 437
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 4 cut(s) 56, 79, 645, 696
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 2 cut(s) 413, 735
Tsp45I GTSAC 2 cut(s) 413, 735
TspDTI ATGAA 3 cut(s) 100, 128, 341
TspRI CASTG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 1 cut(s) 353
XspI CTAG 3 cut(s) 15, 162, 219
ZraI GACGTC 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.