Rw3G003090

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016239
Physical Location & Seq
Reverse (-)
2733018 .. 2735971
2954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003090.1

Sequence Viewer

Length: 1383 bp
ATGTTCATCCTTTTTAGTCAAAGAGAAATTTATAAATTTAAACTAAATCCATCGTTCCTCTCCTTTAAAAAAAAAGTATTGTTGATTGGAAAAAAATTTCTTATCCGGATTGACACCGATGATTATCACCAGGAGGAGGAGGAGGAGGTTCCTATGATCTTGGAGGATCAAGATTCCGGGTCGGGTCGCTCCGAATCGAATCCTTCCGGTTCCGATTCCGATTCCGACTCCGGTGAGCAGAACGATGAAGATTCGGAGTCCGATTGCGAGAGCGAAACCGTTGAATCGAATTCTACTTATCAATTTGGGGCTTTCACCGGAAATGGGATGATGTTCAGAGTGAATGATGTGAGCGAGGAGTACGAGGATATTGTCACGAGCTTTGCTGTGGGTATGGGACCGGCGGCAGGAGTTGCGAAGGTTGTGGCGGCGCACAAGAAATCGATTTCTGGGCTGACCGACCGGGCCAGGTTCGAAACGTTTCGGGTTTTTTCGGAGGCGGTGGGGAAGAAATGCGACGGAAACGCGAACATTAAGTATGCTTGGTACAGCGGATCGAGGGATGAGATTTTTGCTTTGGATGCGGCGTTGGGCTTGGAGGTTGGTGATGATGGGCTCAGGCATATGCTGCTGTGCCGGGTTATATTGGGGAAGATGGAAGTGGTGCCTAGTGGTTCTCAGCAAGGTGTTCCTGGCTCGAATGAGTTTGATTCCGGTGTGGATAGTGCTGTGAATCCGAGGAAGTATTTTGTGTGGAGTGCATTCATGAACTCGCATATTCTTCCTGCTTATGTTGTGAGCTTCAAGGGTCCTGCTAGCTTGAAGGCTTATGTGAAGACTACTACTACTACTCAGGCGGCGAGTGTTGCTAGTGCCATTACTCAGGGGAGTGCTCGATACAAAGGGCCTGGACGTGTTACTGCTGCTGCTCTGGTGGCCGGGCTGACGAGGTTCTTGACTCCCCAAGAAATGAAGATTATTGTCAGATTGCTGGACGAATTCAAGGCAAAGAAGATTACAGGAGAGGAGCTGAAGCGAAAAGCGAGACTCATAGCCGGTGACAAGTTGATTTCAGCCTTGAAATTGATGTCATCGACTGTTAAGGGGAGCGGTACTACTGTTGGTGGTGGAATGCAGCTGGAGAATGGATCAGTACGAGATATCTATCTCCCTGGTCTGATGACCGTGCTTGCAGGGTTGCTGCCTGCTCCGAAGACCGCATTGCTTAGTAAAAGCCTCCGCGATTTCAGGGCTAAGAAGATAACTCGACGTCAGCTGGCTCGATGTGTGAGAATCATTGTTGGCAATGACAGTGTGTTGGTTTCAGCAATCAAATCTTACAGAATCCGTAAGCAGCAGCAGCAAGACAAGTCACCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

460

Amino Acids

50.18

Weight (kDa)

8.88

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 309 - 358 1.2e-08 RCD1-SRO-TAF4 (RST) plant domain
RST PF12174 390 - 448 1.2e-10 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15180 FvH4_1g15250 FvH4_6g03610 FvH4_6g03610
rosa_chinensis RchiOBHm_Chr3g0452151
rosa_laevigata RLG00000025624
rosa_multiflora Rmu_sc0039908.1_g000001
rosa_roxburghii Rroxscaffold_164G00436040 Rroxscaffold_6G00429270
rosa_rugosa Rorug02G0638600
rosa_samantha Rh3AG040600 Rh3BG042100 Rh3CG040500 Rh3DG041400
rosa_wichuraiana Rw3G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AatII GACGTC 1 cut(s) 1273
AccB1I GGYRCC 1 cut(s) 664
AccBSI CCGCTC 1 cut(s) 1110
AccII CGCG 2 cut(s) 527, 1242
AccIII TCCGGA 1 cut(s) 105
AciI CCGC 9 cut(s) 404, 428, 500, 552, 584, 857, 1110, 1218, 1240
AclI AACGTT 1 cut(s) 479
AclWI GGATC 3 cut(s) 174, 562, 1156
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 5 cut(s) 27, 35, 95, 289, 998
AcuI CTGAAG 1 cut(s) 1052
AcyI GRCGYC 1 cut(s) 1270
AfaI GTAC 4 cut(s) 362, 548, 1114, 1155
AfiI CCNNNNNNNGG 3 cut(s) 136, 324, 407
AflIII ACRYGT 1 cut(s) 913
AgsI TTSAA 5 cut(s) 284, 805, 823, 1003, 1081
AjiI CACGTC 1 cut(s) 914
AjnI CCWGG 5 cut(s) 129, 467, 691, 907, 1171
AleI CACNNNNGTG 1 cut(s) 1378
AluBI AGCT 6 cut(s) 381, 801, 819, 1030, 1138, 1276
AluI AGCT 6 cut(s) 381, 801, 819, 1030, 1138, 1276
Alw21I GWGCWC 1 cut(s) 895
Alw26I GTCTC 1 cut(s) 1039
AlwI GGATC 3 cut(s) 174, 562, 1156
Aor13HI TCCGGA 1 cut(s) 105
AoxI GGCC 3 cut(s) 465, 905, 936
ApeKI GCWGC 8 cut(s) 628, 923, 926, 1135, 1201, 1354, 1357, 1360
ApoI RAATTY 5 cut(s) 27, 35, 95, 289, 998
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 4 cut(s) 398, 465, 809, 905
AsuC2I CCSGG 4 cut(s) 178, 464, 638, 940
AsuHPI GGTGA 6 cut(s) 119, 245, 307, 617, 1070, 1365
AsuII TTCGAA 1 cut(s) 474
AsuNHI GCTAGC 1 cut(s) 815
AvaII GGWCC 2 cut(s) 398, 809
BaeI ACNNNNGTAYC 2 cut(s) 1104, 1137
BanI GGYRCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 618
BauI CACGAG 1 cut(s) 376
BbsI GAAGAC 2 cut(s) 842, 1220
Bbv12I GWGCWC 1 cut(s) 895
BbvI GCAGC 8 cut(s) 615, 910, 913, 1147, 1188, 1366, 1369, 1372
BccI CCATC 3 cut(s) 58, 605, 649
BciT130I CCWGG 5 cut(s) 131, 469, 693, 909, 1173
BcnI CCSGG 4 cut(s) 178, 464, 638, 940
BcoDI GTCTC 1 cut(s) 1039
BfaI CTAG 3 cut(s) 669, 816, 870
Bme1390I CCNGG 9 cut(s) 131, 178, 464, 469, 638, 693, 909, 940, 1173
Bme18I GGWCC 2 cut(s) 398, 809
BmgBI CACGTC 1 cut(s) 914
BmgT120I GGNCC 4 cut(s) 398, 465, 809, 905
BmiI GGNNCC 5 cut(s) 150, 211, 399, 666, 810
BmrFI CCNGG 9 cut(s) 131, 178, 464, 469, 638, 693, 909, 940, 1173
BmsI GCATC 1 cut(s) 571
BmtI GCTAGC 1 cut(s) 819
BpiI GAAGAC 2 cut(s) 842, 1220
BpmI CTGGAG 1 cut(s) 1160
Bpu10I CCTNAGC 1 cut(s) 617
Bpu14I TTCGAA 1 cut(s) 474
BpuMI CCSGG 4 cut(s) 178, 464, 638, 940
Bsa29I ATCGAT 1 cut(s) 443
BsaBI GATNNNNATC 2 cut(s) 123, 1164
BsaHI GRCGYC 1 cut(s) 1270
BsaJI CCNNGG 2 cut(s) 737, 1171
BsaWI WCCGGW 5 cut(s) 105, 206, 230, 317, 713
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 324, 407
Bse118I RCCGGY 2 cut(s) 400, 1055
Bse3DI GCAATG 2 cut(s) 1220, 1312
Bse8I GATNNNNATC 2 cut(s) 123, 1164
BseAI TCCGGA 1 cut(s) 105
BseBI CCWGG 5 cut(s) 131, 469, 693, 909, 1173
BseCI ATCGAT 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 737, 1171
BseGI GGATG 4 cut(s) 6, 333, 568, 586
BseJI GATNNNNATC 2 cut(s) 123, 1164
BseLI CCNNNNNNNGG 3 cut(s) 136, 324, 407
BseMI GCAATG 2 cut(s) 1220, 1312
BseMII CTCAG 4 cut(s) 631, 692, 866, 896
BseRI GAGGAG 6 cut(s) 149, 152, 155, 158, 371, 1040
BseXI GCAGC 8 cut(s) 615, 910, 913, 1147, 1188, 1366, 1369, 1372
Bsh1236I CGCG 2 cut(s) 527, 1242
Bsh1285I CGRYCG 1 cut(s) 463
BshFI GGCC 3 cut(s) 467, 907, 938
BshNI GGYRCC 1 cut(s) 664
BshVI ATCGAT 1 cut(s) 443
BsiEI CGRYCG 1 cut(s) 463
BsiHKAI GWGCWC 1 cut(s) 895
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 3 cut(s) 136, 324, 407
BsmAI GTCTC 1 cut(s) 1039
BsmFI GGGAC 1 cut(s) 411
BsmI GAATGC 2 cut(s) 761, 1137
BsnI GGCC 3 cut(s) 467, 907, 938
Bsp119I TTCGAA 1 cut(s) 474
Bsp1286I GDGCHC 2 cut(s) 618, 895
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 4 cut(s) 156, 166, 554, 1148
BspACI CCGC 9 cut(s) 404, 428, 500, 552, 584, 857, 1110, 1218, 1240
BspANI GGCC 3 cut(s) 467, 907, 938
BspCNI CTCAG 4 cut(s) 630, 691, 865, 895
BspDI ATCGAT 1 cut(s) 443
BspEI TCCGGA 1 cut(s) 105
BspFNI CGCG 2 cut(s) 527, 1242
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 5 cut(s) 150, 211, 399, 666, 810
BspOI GCTAGC 1 cut(s) 819
BspPI GGATC 3 cut(s) 174, 562, 1156
BspT104I TTCGAA 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 664
BsrBI CCGCTC 1 cut(s) 1110
BsrDI GCAATG 2 cut(s) 1220, 1312
BsrFI RCCGGY 2 cut(s) 400, 1055
BssAI RCCGGY 2 cut(s) 400, 1055
BssECI CCNNGG 2 cut(s) 737, 1171
BssMI GATC 4 cut(s) 156, 166, 554, 1148
BssNI GRCGYC 1 cut(s) 1270
BssSI CACGAG 1 cut(s) 376
Bst2BI CACGAG 1 cut(s) 376
Bst2UI CCWGG 5 cut(s) 131, 469, 693, 909, 1173
Bst4CI ACNGT 5 cut(s) 280, 1099, 1120, 1186, 1313
BstACI GRCGYC 1 cut(s) 1270
BstAPI GCANNNNNTGC 2 cut(s) 413, 628
BstBI TTCGAA 1 cut(s) 474
BstC8I GCNNGC 4 cut(s) 817, 1191, 1206, 1278
BstDEI CTNAG 6 cut(s) 617, 678, 852, 882, 1226, 1254
BstF5I GGATG 4 cut(s) 6, 333, 568, 586
BstFNI CGCG 2 cut(s) 527, 1242
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 4 cut(s) 159, 169, 557, 1151
BstMAI GTCTC 1 cut(s) 1039
BstMBI GATC 4 cut(s) 156, 166, 554, 1148
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 6 cut(s) 413, 581, 628, 866, 935, 1360
BstNI CCWGG 5 cut(s) 131, 469, 693, 909, 1173
BstSCI CCNGG 9 cut(s) 129, 176, 462, 467, 636, 691, 907, 938, 1171
BstUI CGCG 2 cut(s) 527, 1242
BstV1I GCAGC 8 cut(s) 615, 910, 913, 1147, 1188, 1366, 1369, 1372
BstV2I GAAGAC 2 cut(s) 842, 1220
Bsu15I ATCGAT 1 cut(s) 443
BsuRI GGCC 3 cut(s) 467, 907, 938
BsuTUI ATCGAT 1 cut(s) 443
BtrI CACGTC 1 cut(s) 914
BtsCI GGATG 4 cut(s) 6, 333, 568, 586
BtsIMutI CAGTG 1 cut(s) 1318
Cac8I GCNNGC 4 cut(s) 817, 1191, 1206, 1278
CciI TCATGA 1 cut(s) 765
CfoI GCGC 1 cut(s) 433
Cfr10I RCCGGY 2 cut(s) 400, 1055
Cfr13I GGNCC 4 cut(s) 398, 465, 809, 905
ClaI ATCGAT 1 cut(s) 443
Csp6I GTAC 4 cut(s) 361, 547, 1113, 1154
CviAII CATG 1 cut(s) 766
CviQI GTAC 4 cut(s) 361, 547, 1113, 1154
DdeI CTNAG 6 cut(s) 617, 678, 852, 882, 1226, 1254
DpnI GATC 4 cut(s) 158, 168, 556, 1150
DpnII GATC 4 cut(s) 156, 166, 554, 1148
DraI TTTAAA 2 cut(s) 40, 67
EaeI YGGCCR 1 cut(s) 936
Eco24I GRGCYC 1 cut(s) 618
Eco32I GATATC 1 cut(s) 1162
Eco47I GGWCC 2 cut(s) 398, 809
Eco57I CTGAAG 1 cut(s) 1052
EcoO109I RGGNCCY 2 cut(s) 809, 905
EcoRI GAATTC 2 cut(s) 289, 998
EcoRII CCWGG 5 cut(s) 129, 467, 691, 907, 1171
EcoRV GATATC 1 cut(s) 1162
EcoT38I GRGCYC 1 cut(s) 618
FaeI CATG 1 cut(s) 769
FaqI GGGAC 1 cut(s) 411
FatI CATG 1 cut(s) 765
FauNDI CATATG 1 cut(s) 624
FokI GGATG 3 cut(s) 340, 575, 593
FriOI GRGCYC 1 cut(s) 618
FspBI CTAG 3 cut(s) 669, 816, 870
GlaI GCGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 1160
HaeIII GGCC 3 cut(s) 467, 907, 938
HhaI GCGC 1 cut(s) 433
Hin1I GRCGYC 1 cut(s) 1270
Hin1II CATG 1 cut(s) 769
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HphI GGTGA 6 cut(s) 119, 245, 307, 617, 1070, 1365
Hpy188III TCNNGA 5 cut(s) 106, 170, 376, 766, 955
Hpy99I CGWCG 2 cut(s) 521, 1272
HpyAV CCTTC 3 cut(s) 213, 412, 817
HpyCH4III ACNGT 5 cut(s) 280, 1099, 1120, 1186, 1313
HpyCH4IV ACGT 3 cut(s) 479, 913, 1270
HpyCH4V TGCA 3 cut(s) 761, 1135, 1193
HpyF10VI GCNNNNNNNGC 6 cut(s) 413, 581, 628, 866, 935, 1360
HpyF3I CTNAG 6 cut(s) 617, 678, 852, 882, 1226, 1254
HpySE526I ACGT 3 cut(s) 479, 913, 1270
Hsp92I GRCGYC 1 cut(s) 1270
Hsp92II CATG 1 cut(s) 769
HspAI GCGC 1 cut(s) 431
Kpn2I TCCGGA 1 cut(s) 105
Kzo9I GATC 4 cut(s) 156, 166, 554, 1148
LmnI GCTCC 4 cut(s) 194, 1027, 1107, 1213
Lsp1109I GCAGC 8 cut(s) 615, 910, 913, 1147, 1188, 1366, 1369, 1372
LweI GCATC 1 cut(s) 571
MaeI CTAG 3 cut(s) 669, 816, 870
MaeII ACGT 3 cut(s) 479, 913, 1270
MaeIII GTNAC 4 cut(s) 373, 916, 1058, 1371
MalI GATC 4 cut(s) 158, 168, 556, 1150
MbiI CCGCTC 1 cut(s) 1110
MboI GATC 4 cut(s) 156, 166, 554, 1148
MboII GAAGA 9 cut(s) 260, 520, 664, 773, 847, 985, 1024, 1225, 1270
MhlI GDGCHC 2 cut(s) 618, 895
MluCI AATT 7 cut(s) 27, 35, 95, 289, 302, 998, 1082
MlyI GAGTC 4 cut(s) 221, 266, 952, 1041
MmeI TCCRAC 1 cut(s) 249
MroI TCCGGA 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 480
MseI TTAA 4 cut(s) 39, 66, 534, 1101
MslI CAYNNNNRTG 1 cut(s) 1378
MspA1I CMGCKG 3 cut(s) 552, 1138, 1276
MspR9I CCNGG 9 cut(s) 131, 178, 464, 469, 638, 693, 909, 940, 1173
Mva1269I GAATGC 2 cut(s) 761, 1137
MvaI CCWGG 5 cut(s) 131, 469, 693, 909, 1173
MvnI CGCG 2 cut(s) 527, 1242
MwoI GCNNNNNNNGC 6 cut(s) 413, 581, 628, 866, 935, 1360
NciI CCSGG 4 cut(s) 178, 464, 638, 940
NdeI CATATG 1 cut(s) 624
NdeII GATC 4 cut(s) 156, 166, 554, 1148
NheI GCTAGC 1 cut(s) 815
NlaIII CATG 1 cut(s) 769
NlaIV GGNNCC 5 cut(s) 150, 211, 399, 666, 810
NmuCI GTSAC 3 cut(s) 373, 1058, 1371
NspV TTCGAA 1 cut(s) 474
OliI CACNNNNGTG 1 cut(s) 1378
PagI TCATGA 1 cut(s) 765
PctI GAATGC 2 cut(s) 761, 1137
PdmI GAANNNNTTC 1 cut(s) 480
PleI GAGTC 4 cut(s) 221, 265, 952, 1041
PpsI GAGTC 4 cut(s) 221, 265, 952, 1041
PpuMI RGGWCCY 1 cut(s) 809
PsiI TTATAA 1 cut(s) 33
Psp1406I AACGTT 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 809
Psp6I CCWGG 5 cut(s) 129, 467, 691, 907, 1171
PspGI CCWGG 5 cut(s) 129, 467, 691, 907, 1171
PspN4I GGNNCC 5 cut(s) 150, 211, 399, 666, 810
PspPI GGNCC 4 cut(s) 398, 465, 809, 905
PspPPI RGGWCCY 1 cut(s) 809
PvuII CAGCTG 2 cut(s) 1138, 1276
RsaI GTAC 4 cut(s) 362, 548, 1114, 1155
RsaNI GTAC 4 cut(s) 361, 547, 1113, 1154
RseI CAYNNNNRTG 1 cut(s) 1378
SaqAI TTAA 4 cut(s) 39, 66, 534, 1101
Sau3AI GATC 4 cut(s) 156, 166, 554, 1148
Sau96I GGNCC 4 cut(s) 398, 465, 809, 905
SchI GAGTC 4 cut(s) 221, 266, 952, 1041
ScrFI CCNGG 9 cut(s) 131, 178, 464, 469, 638, 693, 909, 940, 1173
SduI GDGCHC 2 cut(s) 618, 895
SfaNI GCATC 1 cut(s) 571
SfuI TTCGAA 1 cut(s) 474
SinI GGWCC 2 cut(s) 398, 809
SmiMI CAYNNNNRTG 1 cut(s) 1378
Sse9I AATT 7 cut(s) 27, 35, 95, 289, 302, 998, 1082
SsiI CCGC 9 cut(s) 404, 428, 500, 552, 584, 857, 1110, 1218, 1240
SspMI CTAG 3 cut(s) 669, 816, 870
StyD4I CCNGG 9 cut(s) 129, 176, 462, 467, 636, 691, 907, 938, 1171
TaaI ACNGT 5 cut(s) 280, 1099, 1120, 1186, 1313
TaiI ACGT 3 cut(s) 482, 916, 1273
TaqII GACCGA 1 cut(s) 473
TasI AATT 7 cut(s) 27, 35, 95, 289, 302, 998, 1082
TauI GCSGC 4 cut(s) 407, 431, 587, 860
Tru1I TTAA 4 cut(s) 39, 66, 534, 1101
Tru9I TTAA 4 cut(s) 39, 66, 534, 1101
TscAI CASTG 1 cut(s) 1318
TseFI GTSAC 3 cut(s) 373, 1058, 1371
TseI GCWGC 8 cut(s) 628, 923, 926, 1135, 1201, 1354, 1357, 1360
Tsp45I GTSAC 3 cut(s) 373, 1058, 1371
TspDTI ATGAA 4 cut(s) 261, 754, 782, 986
TspGWI ACGGA 2 cut(s) 534, 1337
TspRI CASTG 1 cut(s) 1318
VpaK11BI GGWCC 2 cut(s) 398, 809
XapI RAATTY 5 cut(s) 27, 35, 95, 289, 998
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 3 cut(s) 669, 816, 870
ZraI GACGTC 1 cut(s) 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.