Rh3CG040500

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016239
Physical Location & Seq
Reverse (-)
2742985 .. 2744133
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG040500.1

Sequence Viewer

Length: 1149 bp
ATGATGTTCAGAGTGAATGATGTGAGCGAGGAGTACGAGACTATTGTCACGAGCTTTGCTGTGGGTATGGGACCGGCGGCAGGAGTTACGAAGGTTGTGGCGGCGCACAAGAAATCGATTTCTGGGCTGACCGGCCGGGCCAGGTTCGAAACGTTTCGGGTTTTTTCGGAGGCGGTGGGGAAGAAATGCGACGGAAACGCGAACATTAAGTATGCTTGGTACAGCGGATCGAGGGATGAGATTGTGGAGATAGTGGATCGTGGATTTAGTAGTCGTAATGCGGATGAGTGTGGCCGGATCCAGTTGATTCCGGTTAAGTTTGCTTTGGATGGGGCGTTGGGCTTGGAGGTTGGTGATGATGGGCTCAGGCATATGCTGCTGTGCCGGGTTATATTGGGGAAGATGGAAGTGGTGCCTAGTGGTTCTCAACAAGGTGTTCCTGGCTCGAATGAGTTTGATTCCGGTGTGGATAGTGCTGTGAATCCGAGGAAGTATTTTGTGTGGAGTGCATTCATGAACTCGCATATTCTTCCTGCTTATGTTGTGAGCTTCAAGGGTCCTGCTAGCTTGAAGGCTTATGTGAAGACTACTGCTACTACTTCTCAGGCGGCGAGTGTTGCTAGTGCTATTACTCAGGGGAGTGCTCGATACAAGAGAGCCATGCCTGGACGTGTTACTGCTGCTGCTCTGGTGGCCGGGCTCACGAGGTTCTTGACTCCCCAAGAAATGAAGATTATTGTCAGATTGCTGGACGAATTCAAGGCAAAGAAGATTACAGGAGAGGAGCTGAAGCGAAAAGCGAAACTCGTAGCCGGTGACAAGTTGATTTCAGCCTTGAAATTGATGTCATCTACTGTTAAGGGGAGCGGTACTGTTGGTGGTGGAATGCAGCTGGAGAATGGATCAGTACGAGATATCTATCTCCCTGGTCTGATGACCGTGCTTGCAGGGTTGCTGCCTGCTCCGAAGTCGGCCATGCTTAGTAAAAGCCTCCGCGATTTCAGGGCTAAGAAGATAACTCGACGTCAGCTGGCTCGATGTGTGAGAATCATTGTTGGCAATGACAGTGTGTTGGTTTCAGCAATCAAATCTTACAGAATCAGTAAGCAGCAGCAGCAGCAGCAGCAGCGAGACAAGTCACCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

382

Amino Acids

41.29

Weight (kDa)

9.98

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 228 - 277 1.4e-07 RCD1-SRO-TAF4 (RST) plant domain
RST PF12174 308 - 366 2.8e-10 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15180 FvH4_1g15250 FvH4_6g03610 FvH4_6g03610
rosa_chinensis RchiOBHm_Chr3g0452151
rosa_laevigata RLG00000025624
rosa_multiflora Rmu_sc0039908.1_g000001
rosa_roxburghii Rroxscaffold_164G00436040 Rroxscaffold_6G00429270
rosa_rugosa Rorug02G0638600
rosa_samantha Rh3AG040600 Rh3BG042100 Rh3CG040500 Rh3DG041400
rosa_wichuraiana Rw3G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1027
AccB1I GGYRCC 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 867
AccII CGCG 2 cut(s) 200, 996
AciI CCGC 8 cut(s) 77, 101, 173, 225, 281, 608, 867, 994
AclI AACGTT 1 cut(s) 152
AclWI GGATC 5 cut(s) 235, 264, 292, 305, 910
AcoI YGGCCR 4 cut(s) 133, 292, 693, 972
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 809
AcyI GRCGYC 1 cut(s) 1024
AfaI GTAC 4 cut(s) 35, 221, 871, 909
AfiI CCNNNNNNNGG 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 670
AgsI TTSAA 4 cut(s) 553, 571, 760, 838
AjiI CACGTC 1 cut(s) 671
AjnI CCWGG 4 cut(s) 140, 439, 664, 925
AleI CACNNNNGTG 1 cut(s) 1144
AluBI AGCT 6 cut(s) 54, 549, 567, 787, 892, 1030
AluI AGCT 6 cut(s) 54, 549, 567, 787, 892, 1030
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 2 cut(s) 32, 1125
AlwI GGATC 5 cut(s) 235, 264, 292, 305, 910
AoxI GGCC 5 cut(s) 133, 138, 292, 693, 972
ApoI RAATTY 1 cut(s) 755
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 3 cut(s) 71, 138, 557
AsuC2I CCSGG 3 cut(s) 137, 386, 697
AsuHPI GGTGA 3 cut(s) 365, 827, 1131
AsuII TTCGAA 1 cut(s) 147
AsuNHI GCTAGC 1 cut(s) 563
AvaII GGWCC 2 cut(s) 71, 557
BamHI GGATCC 1 cut(s) 297
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 2 cut(s) 366, 702
BauI CACGAG 2 cut(s) 49, 703
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 646
BccI CCATC 3 cut(s) 323, 353, 397
BciT130I CCWGG 4 cut(s) 142, 441, 666, 927
BcnI CCSGG 3 cut(s) 137, 386, 697
BcoDI GTCTC 2 cut(s) 32, 1125
BfaI CTAG 3 cut(s) 417, 564, 621
Bme1390I CCNGG 7 cut(s) 137, 142, 386, 441, 666, 697, 927
Bme18I GGWCC 2 cut(s) 71, 557
BmgBI CACGTC 1 cut(s) 671
BmgT120I GGNCC 3 cut(s) 71, 138, 557
BmiI GGNNCC 4 cut(s) 72, 299, 414, 558
BmrFI CCNGG 7 cut(s) 137, 142, 386, 441, 666, 697, 927
BmtI GCTAGC 1 cut(s) 567
BoxI GACNNNNGTC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 590
BpmI CTGGAG 1 cut(s) 914
Bpu10I CCTNAGC 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 147
BpuMI CCSGG 3 cut(s) 137, 386, 697
Bsa29I ATCGAT 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 1024
BsaJI CCNNGG 2 cut(s) 485, 925
BsaWI WCCGGW 2 cut(s) 310, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 3 cut(s) 73, 131, 812
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 1066
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 4 cut(s) 142, 441, 666, 927
BseCI ATCGAT 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 485, 925
BseGI GGATG 3 cut(s) 241, 289, 334
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 1066
BseMII CTCAG 3 cut(s) 379, 617, 647
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 2 cut(s) 44, 797
BseX3I CGGCCG 1 cut(s) 133
Bsh1236I CGCG 2 cut(s) 200, 996
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 5 cut(s) 135, 140, 294, 695, 974
BshNI GGYRCC 1 cut(s) 412
BshVI ATCGAT 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 9 cut(s) 74, 132, 136, 295, 311, 385, 462, 696, 813
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 32, 1125
BsmFI GGGAC 1 cut(s) 84
BsmI GAATGC 2 cut(s) 509, 891
BsnI GGCC 5 cut(s) 135, 140, 294, 695, 974
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 3 cut(s) 366, 646, 702
Bsp143I GATC 4 cut(s) 227, 256, 297, 902
BspACI CCGC 8 cut(s) 77, 101, 173, 225, 281, 608, 867, 994
BspANI GGCC 5 cut(s) 135, 140, 294, 695, 974
BspCNI CTCAG 3 cut(s) 378, 616, 646
BspDI ATCGAT 1 cut(s) 116
BspFNI CGCG 2 cut(s) 200, 996
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 4 cut(s) 72, 299, 414, 558
BspOI GCTAGC 1 cut(s) 567
BspPI GGATC 5 cut(s) 235, 264, 292, 305, 910
BspT104I TTCGAA 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 867
BsrDI GCAATG 1 cut(s) 1066
BsrFI RCCGGY 3 cut(s) 73, 131, 812
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 3 cut(s) 73, 131, 812
BssECI CCNNGG 2 cut(s) 485, 925
BssMI GATC 4 cut(s) 227, 256, 297, 902
BssNI GRCGYC 1 cut(s) 1024
BssSI CACGAG 2 cut(s) 49, 703
Bst2BI CACGAG 2 cut(s) 49, 703
Bst2UI CCWGG 4 cut(s) 142, 441, 666, 927
Bst4CI ACNGT 4 cut(s) 856, 874, 940, 1067
BstACI GRCGYC 1 cut(s) 1024
BstAPI GCANNNNNTGC 1 cut(s) 376
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 4 cut(s) 565, 945, 960, 1032
BstDEI CTNAG 5 cut(s) 365, 603, 633, 980, 1008
BstF5I GGATG 3 cut(s) 241, 289, 334
BstFNI CGCG 2 cut(s) 200, 996
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 4 cut(s) 230, 259, 300, 905
BstMAI GTCTC 2 cut(s) 32, 1125
BstMBI GATC 4 cut(s) 227, 256, 297, 902
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 8 cut(s) 376, 617, 692, 1114, 1117, 1120, 1123, 1126
BstNI CCWGG 4 cut(s) 142, 441, 666, 927
BstPAI GACNNNNGTC 1 cut(s) 44
BstSCI CCNGG 7 cut(s) 135, 140, 384, 439, 664, 695, 925
BstUI CGCG 2 cut(s) 200, 996
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BstZI CGGCCG 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 116
BsuRI GGCC 5 cut(s) 135, 140, 294, 695, 974
BsuTUI ATCGAT 1 cut(s) 116
BtrI CACGTC 1 cut(s) 671
BtsCI GGATG 3 cut(s) 241, 289, 334
BtsIMutI CAGTG 1 cut(s) 1072
Cac8I GCNNGC 4 cut(s) 565, 945, 960, 1032
CciI TCATGA 1 cut(s) 513
CfoI GCGC 1 cut(s) 106
Cfr10I RCCGGY 3 cut(s) 73, 131, 812
Cfr13I GGNCC 3 cut(s) 71, 138, 557
ClaI ATCGAT 1 cut(s) 116
Csp6I GTAC 4 cut(s) 34, 220, 870, 908
CviAII CATG 3 cut(s) 514, 661, 976
CviQI GTAC 4 cut(s) 34, 220, 870, 908
DdeI CTNAG 5 cut(s) 365, 603, 633, 980, 1008
DpnI GATC 4 cut(s) 229, 258, 299, 904
DpnII GATC 4 cut(s) 227, 256, 297, 902
EaeI YGGCCR 4 cut(s) 133, 292, 693, 972
EagI CGGCCG 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 133
Eco24I GRGCYC 2 cut(s) 366, 702
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 2 cut(s) 71, 557
Eco52I CGGCCG 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 809
EcoO109I RGGNCCY 1 cut(s) 557
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 4 cut(s) 140, 439, 664, 925
EcoRV GATATC 1 cut(s) 916
EcoT38I GRGCYC 2 cut(s) 366, 702
FaeI CATG 3 cut(s) 517, 664, 979
FaqI GGGAC 1 cut(s) 84
FatI CATG 3 cut(s) 513, 660, 975
FauNDI CATATG 1 cut(s) 372
FokI GGATG 3 cut(s) 248, 296, 341
FriOI GRGCYC 2 cut(s) 366, 702
FspBI CTAG 3 cut(s) 417, 564, 621
GlaI GCGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 914
HaeIII GGCC 5 cut(s) 135, 140, 294, 695, 974
HapII CCGG 9 cut(s) 74, 132, 136, 295, 311, 385, 462, 696, 813
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 1024
Hin1II CATG 3 cut(s) 517, 664, 979
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 6 cut(s) 307, 458, 481, 715, 1047, 1098
HpaII CCGG 9 cut(s) 74, 132, 136, 295, 311, 385, 462, 696, 813
HphI GGTGA 3 cut(s) 365, 827, 1131
Hpy188I TCNGA 6 cut(s) 11, 169, 486, 743, 933, 966
Hpy188III TCNNGA 4 cut(s) 49, 514, 703, 712
Hpy99I CGWCG 2 cut(s) 194, 1026
HpyAV CCTTC 2 cut(s) 85, 565
HpyCH4III ACNGT 4 cut(s) 856, 874, 940, 1067
HpyCH4IV ACGT 3 cut(s) 152, 670, 1024
HpyCH4V TGCA 3 cut(s) 509, 889, 947
HpyF10VI GCNNNNNNNGC 8 cut(s) 376, 617, 692, 1114, 1117, 1120, 1123, 1126
HpyF3I CTNAG 5 cut(s) 365, 603, 633, 980, 1008
HpySE526I ACGT 3 cut(s) 152, 670, 1024
Hsp92I GRCGYC 1 cut(s) 1024
Hsp92II CATG 3 cut(s) 517, 664, 979
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 4 cut(s) 227, 256, 297, 902
LmnI GCTCC 3 cut(s) 784, 864, 967
MaeI CTAG 3 cut(s) 417, 564, 621
MaeII ACGT 3 cut(s) 152, 670, 1024
MaeIII GTNAC 5 cut(s) 46, 85, 673, 815, 1137
MalI GATC 4 cut(s) 229, 258, 299, 904
MbiI CCGCTC 1 cut(s) 867
MboI GATC 4 cut(s) 227, 256, 297, 902
MboII GAAGA 7 cut(s) 193, 412, 521, 595, 742, 781, 1024
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 3 cut(s) 366, 646, 702
MluCI AATT 2 cut(s) 755, 839
MlyI GAGTC 1 cut(s) 709
MnlI CCTC 8 cut(s) 22, 163, 225, 340, 480, 699, 775, 1001
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 3 cut(s) 207, 315, 858
MslI CAYNNNNRTG 1 cut(s) 1144
MspA1I CMGCKG 3 cut(s) 225, 892, 1030
MspI CCGG 9 cut(s) 74, 132, 136, 295, 311, 385, 462, 696, 813
MspR9I CCNGG 7 cut(s) 137, 142, 386, 441, 666, 697, 927
Mva1269I GAATGC 2 cut(s) 509, 891
MvaI CCWGG 4 cut(s) 142, 441, 666, 927
MvnI CGCG 2 cut(s) 200, 996
MwoI GCNNNNNNNGC 8 cut(s) 376, 617, 692, 1114, 1117, 1120, 1123, 1126
NciI CCSGG 3 cut(s) 137, 386, 697
NdeI CATATG 1 cut(s) 372
NdeII GATC 4 cut(s) 227, 256, 297, 902
NheI GCTAGC 1 cut(s) 563
NlaIII CATG 3 cut(s) 517, 664, 979
NlaIV GGNNCC 4 cut(s) 72, 299, 414, 558
NmuCI GTSAC 3 cut(s) 46, 815, 1137
NspV TTCGAA 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 1144
PagI TCATGA 1 cut(s) 513
PctI GAATGC 2 cut(s) 509, 891
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 5 cut(s) 307, 458, 481, 1047, 1098
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PpuMI RGGWCCY 1 cut(s) 557
PshAI GACNNNNGTC 1 cut(s) 44
Psp1406I AACGTT 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 557
Psp6I CCWGG 4 cut(s) 140, 439, 664, 925
PspGI CCWGG 4 cut(s) 140, 439, 664, 925
PspN4I GGNNCC 4 cut(s) 72, 299, 414, 558
PspPI GGNCC 3 cut(s) 71, 138, 557
PspPPI RGGWCCY 1 cut(s) 557
PsuI RGATCY 1 cut(s) 297
PvuII CAGCTG 2 cut(s) 892, 1030
RsaI GTAC 4 cut(s) 35, 221, 871, 909
RsaNI GTAC 4 cut(s) 34, 220, 870, 908
RseI CAYNNNNRTG 1 cut(s) 1144
SaqAI TTAA 3 cut(s) 207, 315, 858
Sau3AI GATC 4 cut(s) 227, 256, 297, 902
Sau96I GGNCC 3 cut(s) 71, 138, 557
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 7 cut(s) 137, 142, 386, 441, 666, 697, 927
SduI GDGCHC 3 cut(s) 366, 646, 702
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 2 cut(s) 71, 557
SmiMI CAYNNNNRTG 1 cut(s) 1144
Sse9I AATT 2 cut(s) 755, 839
SsiI CCGC 8 cut(s) 77, 101, 173, 225, 281, 608, 867, 994
SspMI CTAG 3 cut(s) 417, 564, 621
StyD4I CCNGG 7 cut(s) 135, 140, 384, 439, 664, 695, 925
TaaI ACNGT 4 cut(s) 856, 874, 940, 1067
TaiI ACGT 3 cut(s) 155, 673, 1027
TaqI TCGA 7 cut(s) 116, 147, 230, 446, 646, 1021, 1036
TasI AATT 2 cut(s) 755, 839
TauI GCSGC 3 cut(s) 80, 104, 611
TfiI GAWTC 5 cut(s) 307, 458, 481, 1047, 1098
Tru1I TTAA 3 cut(s) 207, 315, 858
Tru9I TTAA 3 cut(s) 207, 315, 858
TscAI CASTG 1 cut(s) 1072
TseFI GTSAC 3 cut(s) 46, 815, 1137
Tsp45I GTSAC 3 cut(s) 46, 815, 1137
TspDTI ATGAA 3 cut(s) 502, 530, 743
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 1 cut(s) 1072
VpaK11BI GGWCC 2 cut(s) 71, 557
XapI RAATTY 1 cut(s) 755
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 3 cut(s) 417, 564, 621
ZraI GACGTC 1 cut(s) 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.