Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013592

Physical Location & Seq

Genomic Coordinates Forward (+)

9020791 .. 9021558

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCCGTCGCCGGCGATTGTGCTCCTCGTCCTCTTCCTCCTAGCCGCCGTCACTTTGCTCCTCTACTACTTCCTCCGCCGCCGCCTCCGATCACTTCTTCTCCGCCGTTCCGCCACCGCATCGCCGCTCCAGAGCTCACAATCTCGCCGCCGGCAAGTCTCTCCCGCGCCGTCCTCCGCCTCCGCCGGCCTCCTCCTCCCGCTGTTCAAATTCTCGGACGTGAAACGCCCCGGCTCCGTCACATTCGCCGGAGACTGCGCGATTTGCCTGGCGGAGTTCGAGCCGGACCACCACCTCCGCCTCCTCCCGCTCTGCCTCCACGCCTTCCACGTGGACTGCATCGACACCTGGCTCGCCGGCGACTCGCAAATCTGTCCGGTTTGCCGCGCCGGCATTTTCCGGACCGATTCGGACCTCCTCCGGACAGCCGTCTCCGGCGGAAGCTTCCGCCTGGCGATCGGCAACGTCAGCCGCGGACGGCGACCGGACACGGCGGCGAATTCGAGCTCGAGAATCAACTCAATCGGCGGAGGTGAGTTCGACTATGTCGTGGATGAGGAATGGGAGCTTCAACTGAGAGATGCGGTGTTGCCGCCGGTTCACGACCAAGGCGGAGAGGACGAGATCGCCGCCGTCGTTATCGACCGCGAACCTCCGCTTTCTGCGGCGCCAATTTCGGAGTACCAGAGCATGATTTTCACTGGGAGCAGCCGGCGTTGGACGGAGTTATCGGAGGGAATTGAGATGCTTTCCCGGTGGCTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

256

Amino Acids

28.02

Weight (kDa)

6.22

Isoelectric Point (pI)

82.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	85 - 129	2.5e-12	Ring finger domain
zf-RING_11	PF17123	85 - 114	1.1e-08	RING-like zinc finger
zf-C3HC4	PF00097	86 - 128	2.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	101 - 129	2.5e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15850
rosa_chinensis	RchiOBHm_Chr2g0168321
rosa_laevigata	RLG00000017407 RLG00000021766
rosa_multiflora	Rmu_sc0001170.1_g000006 Rmu_sc0003354.1_g000015 Rmu_sc0006734.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083150
rosa_rugosa	Rorug02G0126700 Rorug02G0532600
rosa_samantha	Rh2AG177400 Rh2BG185400 Rh2BG615200 Rh2CG582900 Rh2DG183500 Rh2DG625400
rosa_wichuraiana	Rw2G013920 Rw2G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	667
AccBSI	CCGCTC	2 cut(s)	127, 310
AccII	CGCG	5 cut(s)	167, 260, 387, 474, 648
AccIII	TCCGGA	2 cut(s)	399, 420
AcsI	RAATTY	2 cut(s)	209, 499
AcvI	CACGTG	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	1 cut(s)	683
AgsI	TTSAA	2 cut(s)	208, 572
AjiI	CACGTC	1 cut(s)	220
AjnI	CCWGG	3 cut(s)	267, 347, 450
AluBI	AGCT	4 cut(s)	135, 444, 507, 568
AluI	AGCT	4 cut(s)	135, 444, 507, 568
Alw21I	GWGCWC	3 cut(s)	24, 137, 509
Alw26I	GTCTC	3 cut(s)	163, 246, 436
Ama87I	CYCGRG	1 cut(s)	508
Aor13HI	TCCGGA	2 cut(s)	399, 420
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	708
ApoI	RAATTY	2 cut(s)	209, 499
AspLEI	GCGC	4 cut(s)	169, 260, 389, 670
AspS9I	GGNCC	3 cut(s)	286, 402, 412
AsuC2I	CCSGG	2 cut(s)	231, 754
AsuHPI	GGTGA	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	3 cut(s)	286, 402, 412
BanI	GGYRCC	1 cut(s)	667
BanII	GRGCYC	2 cut(s)	137, 509
BbrPI	CACGTG	1 cut(s)	331
Bbv12I	GWGCWC	3 cut(s)	24, 137, 509
BbvI	GCAGC	1 cut(s)	720
BceAI	ACGGC	7 cut(s)	32, 90, 154, 413, 494, 507, 617
BciT130I	CCWGG	3 cut(s)	269, 349, 452
BcnI	CCSGG	2 cut(s)	231, 754
BcoDI	GTCTC	3 cut(s)	163, 246, 436
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	671
BglI	GCCNNNNNGGC	1 cut(s)	390
Bme1390I	CCNGG	5 cut(s)	231, 269, 349, 452, 754
Bme18I	GGWCC	3 cut(s)	286, 402, 412
BmeT110I	CYCGRG	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	286, 402, 412
BmiI	GGNNCC	2 cut(s)	235, 669
BmrFI	CCNGG	5 cut(s)	231, 269, 349, 452, 754
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	4 cut(s)	128, 348, 571, 735
BmuI	ACTGGG	1 cut(s)	711
BoxI	GACNNNNGTC	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	231, 754
BsaAI	YACGTR	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	229, 472, 607
BsaWI	WCCGGW	4 cut(s)	376, 399, 420, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse118I	RCCGGY	7 cut(s)	10, 150, 185, 356, 389, 595, 711
Bse1I	ACTGG	1 cut(s)	706
BseAI	TCCGGA	2 cut(s)	399, 420
BseBI	CCWGG	3 cut(s)	269, 349, 452
BseDI	CCNNGG	3 cut(s)	229, 472, 607
BseGI	GGATG	1 cut(s)	559
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	706
BseRI	GAGGAG	6 cut(s)	14, 50, 182, 185, 293, 407
BseXI	GCAGC	1 cut(s)	720
Bsh1236I	CGCG	5 cut(s)	167, 260, 387, 474, 648
Bsh1285I	CGRYCG	3 cut(s)	459, 485, 646
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	667
BsiEI	CGRYCG	3 cut(s)	459, 485, 646
BsiHKAI	GWGCWC	3 cut(s)	24, 137, 509
BsiHKCI	CYCGRG	1 cut(s)	508
BsmAI	GTCTC	3 cut(s)	163, 246, 436
BsmBI	CGTCTC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	508
Bsp1286I	GDGCHC	3 cut(s)	24, 137, 509
Bsp13I	TCCGGA	2 cut(s)	399, 420
Bsp143I	GATC	3 cut(s)	89, 456, 624
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	567
BspEI	TCCGGA	2 cut(s)	399, 420
BspFNI	CGCG	5 cut(s)	167, 260, 387, 474, 648
BspLI	GGNNCC	2 cut(s)	235, 669
BspT107I	GGYRCC	1 cut(s)	667
BsrBI	CCGCTC	2 cut(s)	127, 310
BsrFI	RCCGGY	7 cut(s)	10, 150, 185, 356, 389, 595, 711
BsrI	ACTGG	1 cut(s)	706
BssAI	RCCGGY	7 cut(s)	10, 150, 185, 356, 389, 595, 711
BssECI	CCNNGG	3 cut(s)	229, 472, 607
BssMI	GATC	3 cut(s)	89, 456, 624
BssNI	GRCGYC	1 cut(s)	668
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	3 cut(s)	269, 349, 452
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	668
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	7 cut(s)	12, 152, 187, 354, 358, 391, 713
BstDEI	CTNAG	1 cut(s)	575
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	5 cut(s)	167, 260, 387, 474, 648
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	4 cut(s)	169, 260, 389, 670
BstKTI	GATC	3 cut(s)	92, 459, 627
BstMAI	GTCTC	3 cut(s)	163, 246, 436
BstMBI	GATC	3 cut(s)	89, 456, 624
BstMCI	CGRYCG	3 cut(s)	459, 485, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	264, 390, 468
BstNI	CCWGG	3 cut(s)	269, 349, 452
BstPAI	GACNNNNGTC	1 cut(s)	428
BstSCI	CCNGG	5 cut(s)	229, 267, 347, 450, 752
BstUI	CGCG	5 cut(s)	167, 260, 387, 474, 648
BstV1I	GCAGC	1 cut(s)	720
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	472
BtgZI	GCGATG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	7 cut(s)	12, 152, 187, 354, 358, 391, 713
CfoI	GCGC	4 cut(s)	169, 260, 389, 670
Cfr10I	RCCGGY	7 cut(s)	10, 150, 185, 356, 389, 595, 711
Cfr13I	GGNCC	3 cut(s)	286, 402, 412
Cfr42I	CCGCGG	1 cut(s)	475
CpoI	CGGWCCG	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	682
CspI	CGGWCCG	1 cut(s)	402
CviAII	CATG	1 cut(s)	691
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	1 cut(s)	575
DinI	GGCGCC	1 cut(s)	669
DpnI	GATC	3 cut(s)	91, 458, 626
DpnII	GATC	3 cut(s)	89, 456, 624
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	2 cut(s)	135, 507
Eco130I	CCWWGG	1 cut(s)	607
Eco24I	GRGCYC	2 cut(s)	137, 509
Eco47I	GGWCC	3 cut(s)	286, 402, 412
Eco53kI	GAGCTC	2 cut(s)	135, 507
Eco72I	CACGTG	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	508
EcoICRI	GAGCTC	2 cut(s)	135, 507
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	3 cut(s)	267, 347, 450
EcoT14I	CCWWGG	1 cut(s)	607
EcoT38I	GRGCYC	2 cut(s)	137, 509
EgeI	GGCGCC	1 cut(s)	669
EheI	GGCGCC	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	607
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	1 cut(s)	694
FaiI	YATR	2 cut(s)	546, 692
FatI	CATG	1 cut(s)	690
FauI	CCCGC	3 cut(s)	172, 207, 315
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	2 cut(s)	137, 509
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	4 cut(s)	168, 259, 388, 669
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	1 cut(s)	189
HhaI	GCGC	4 cut(s)	169, 260, 389, 670
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	1 cut(s)	694
Hin6I	GCGC	4 cut(s)	167, 258, 387, 668
HinP1I	GCGC	4 cut(s)	167, 258, 387, 668
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	3 cut(s)	362, 407, 513
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	2 cut(s)	334, 601
Hpy188I	TCNGA	5 cut(s)	89, 217, 412, 679, 733
Hpy188III	TCNNGA	6 cut(s)	130, 400, 421, 510, 602, 765
Hpy8I	GTNNAC	2 cut(s)	334, 601
Hpy99I	CGWCG	2 cut(s)	10, 638
HpyAV	CCTTC	1 cut(s)	334
HpyCH4IV	ACGT	3 cut(s)	219, 330, 465
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	264, 390, 468
HpyF3I	CTNAG	1 cut(s)	575
HpySE526I	ACGT	3 cut(s)	219, 330, 465
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	1 cut(s)	694
HspAI	GCGC	4 cut(s)	167, 258, 387, 668
KasI	GGCGCC	1 cut(s)	667
Kpn2I	TCCGGA	2 cut(s)	399, 420
KroI	GCCGGC	6 cut(s)	10, 150, 185, 356, 389, 711
KroNI	GCCGGC	6 cut(s)	12, 152, 187, 358, 391, 713
KspI	CCGCGG	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	89, 456, 624
LmnI	GCTCC	6 cut(s)	27, 63, 132, 239, 565, 705
Lsp1109I	GCAGC	1 cut(s)	720
LweI	GCATC	4 cut(s)	128, 348, 571, 735
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	3 cut(s)	219, 330, 465
MaeIII	GTNAC	2 cut(s)	49, 238
MalI	GATC	3 cut(s)	91, 458, 626
MbiI	CCGCTC	2 cut(s)	127, 310
MboI	GATC	3 cut(s)	89, 456, 624
MboII	GAAGA	2 cut(s)	25, 89
MhlI	GDGCHC	3 cut(s)	24, 137, 509
MluCI	AATT	4 cut(s)	209, 499, 672, 738
Mly113I	GGCGCC	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	698
MreI	CGCCGGCG	2 cut(s)	10, 356
MroI	TCCGGA	2 cut(s)	399, 420
MroNI	GCCGGC	6 cut(s)	10, 150, 185, 356, 389, 711
MspA1I	CMGCKG	2 cut(s)	202, 474
MspR9I	CCNGG	5 cut(s)	231, 269, 349, 452, 754
MvaI	CCWGG	3 cut(s)	269, 349, 452
MvnI	CGCG	5 cut(s)	167, 260, 387, 474, 648
MwoI	GCNNNNNNNGC	3 cut(s)	264, 390, 468
NaeI	GCCGGC	6 cut(s)	12, 152, 187, 358, 391, 713
NarI	GGCGCC	1 cut(s)	668
NciI	CCSGG	2 cut(s)	231, 754
NdeII	GATC	3 cut(s)	89, 456, 624
NgoMIV	GCCGGC	6 cut(s)	10, 150, 185, 356, 389, 711
NlaIII	CATG	1 cut(s)	694
NlaIV	GGNNCC	2 cut(s)	235, 669
NmuCI	GTSAC	2 cut(s)	49, 238
PaeR7I	CTCGAG	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	3 cut(s)	327, 546, 633
PdiI	GCCGGC	6 cut(s)	12, 152, 187, 358, 391, 713
PfeI	GAWTC	2 cut(s)	407, 513
PflFI	GACNNNGTC	1 cut(s)	545
Ple19I	CGATCG	1 cut(s)	459
PleI	GAGTC	1 cut(s)	356
PluTI	GGCGCC	1 cut(s)	671
PmaCI	CACGTG	1 cut(s)	331
PmlI	CACGTG	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	331
PshAI	GACNNNNGTC	1 cut(s)	428
Psp124BI	GAGCTC	2 cut(s)	137, 509
Psp6I	CCWGG	3 cut(s)	267, 347, 450
PspCI	CACGTG	1 cut(s)	331
PspGI	CCWGG	3 cut(s)	267, 347, 450
PspN4I	GGNNCC	2 cut(s)	235, 669
PspPI	GGNCC	3 cut(s)	286, 402, 412
PsyI	GACNNNGTC	1 cut(s)	545
PvuI	CGATCG	1 cut(s)	459
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
Rsr2I	CGGWCCG	1 cut(s)	402
RsrII	CGGWCCG	1 cut(s)	402
SacI	GAGCTC	2 cut(s)	137, 509
SacII	CCGCGG	1 cut(s)	475
Sau3AI	GATC	3 cut(s)	89, 456, 624
Sau96I	GGNCC	3 cut(s)	286, 402, 412
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	5 cut(s)	231, 269, 349, 452, 754
SduI	GDGCHC	3 cut(s)	24, 137, 509
SfaNI	GCATC	4 cut(s)	128, 348, 571, 735
SfoI	GGCGCC	1 cut(s)	669
Sfr274I	CTCGAG	1 cut(s)	508
Sfr303I	CCGCGG	1 cut(s)	475
SgrAI	CRCCGGYG	2 cut(s)	10, 356
SgrBI	CCGCGG	1 cut(s)	475
SinI	GGWCC	3 cut(s)	286, 402, 412
SlaI	CTCGAG	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	4 cut(s)	209, 499, 672, 738
SspDI	GGCGCC	1 cut(s)	667
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	2 cut(s)	137, 509
StyD4I	CCNGG	5 cut(s)	229, 267, 347, 450, 752
StyI	CCWWGG	1 cut(s)	607
TaiI	ACGT	3 cut(s)	222, 333, 468
TaqI	TCGA	6 cut(s)	279, 342, 503, 509, 540, 642
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	4 cut(s)	209, 499, 672, 738
TfiI	GAWTC	2 cut(s)	407, 513
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	2 cut(s)	49, 238
TseI	GCWGC	1 cut(s)	708
Tsp45I	GTSAC	2 cut(s)	49, 238
TspGWI	ACGGA	2 cut(s)	226, 737
TspRI	CASTG	1 cut(s)	706
Tth111I	GACNNNGTC	1 cut(s)	545
VpaK11BI	GGWCC	3 cut(s)	286, 402, 412
XapI	RAATTY	2 cut(s)	209, 499
XhoI	CTCGAG	1 cut(s)	508
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.