Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013592

Physical Location & Seq

Genomic Coordinates Forward (+)

16527831 .. 16528561

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG185400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTATCGTCGGCGATTGTGATCCTCGTCCTCTTCATCCTAGCCGTCGTTGCTTTGCTCCTCTCCTACTACCTCCGCCGCCTCCGATCACAACCTCTCCGTCAACCAGACGCCGCCGCTCCTGTCCAGAGCTCACACTCTCGCCGCCGGCAAGTCTCTCCTGCGCCTTCCTCCTCAGGCCTCCTCCTCCCGCGCTTCAAATTCTCCGACCTGAAACGCCCCGGCTCCGTCACCGTCGGCGGAGACTGCGCGATTTGCCTGGCTGAGTTCGAGCCGGACCACCAGCTCCGCCTCCTCCCTCTCTGCCTCCACGCCTTCCACGAGGATTGCATCGACACCTGGCTCGCCGGCGAGTCGCTGATTTGTCCGGTTTGCCGCTCCGAGGTCTTCCGGTCCGACTCGGACCTCCTCCAGACAGCCTCGTCCGGCGGAAGCTTCCGGCTGGATATCGGCAGCGTCAGCCGCGGACTGCGGCACGACACGGCGGCGAATTCGAGCTCGCGAACTCACTCAATTGGCGGAGGTGAATTCGAGTATGATGTGGATGAGGAGTGGGAGCTTCAACTCAGAGATGAAGTTCTTCCTGTTCACGACGAAGGCGAGGACGACGAGATCGTCGCCGTCGTTATCGACAGCCAACCTCCGCCGTCTACGGCGCAAACCATGGAGTATCAGAGCTCCTGCGGCAATGATTTTCACAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

235

Amino Acids

25.88

Weight (kDa)

5.03

Isoelectric Point (pI)

73.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	82 - 126	2.5e-12	Ring finger domain
zf-RING_11	PF17123	82 - 111	1.2e-09	RING-like zinc finger
zf-C3HC4	PF00097	83 - 125	6.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	83 - 123	2.3e-06	RING-type zinc-finger
zf-C3HC4_2	PF13923	83 - 125	2.5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15850
rosa_chinensis	RchiOBHm_Chr2g0168321
rosa_laevigata	RLG00000017407 RLG00000021766
rosa_multiflora	Rmu_sc0001170.1_g000006 Rmu_sc0003354.1_g000015 Rmu_sc0006734.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083150
rosa_rugosa	Rorug02G0126700 Rorug02G0532600
rosa_samantha	Rh2AG177400 Rh2BG185400 Rh2BG615200 Rh2CG582900 Rh2DG183500 Rh2DG625400
rosa_wichuraiana	Rw2G013920 Rw2G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	421, 614
AccBSI	CCGCTC	2 cut(s)	119, 378
AccI	GTMKAC	1 cut(s)	650
AccII	CGCG	4 cut(s)	193, 251, 465, 502
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	3 cut(s)	200, 490, 527
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	199, 563
AjnI	CCWGG	2 cut(s)	258, 338
AluBI	AGCT	6 cut(s)	132, 286, 435, 498, 559, 678
AluI	AGCT	6 cut(s)	132, 286, 435, 498, 559, 678
Alw21I	GWGCWC	3 cut(s)	134, 500, 680
Alw26I	GTCTC	2 cut(s)	160, 237
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	453
ApoI	RAATTY	3 cut(s)	200, 490, 527
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	4 cut(s)	166, 195, 251, 658
AspS9I	GGNCC	3 cut(s)	277, 393, 403
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	223, 536
AvaII	GGWCC	3 cut(s)	277, 393, 403
AxyI	CCTNAGG	1 cut(s)	175
BanII	GRGCYC	3 cut(s)	134, 500, 680
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	3 cut(s)	134, 500, 680
BbvI	GCAGC	1 cut(s)	465
BceAI	ACGGC	5 cut(s)	29, 498, 605, 631, 669
BciT130I	CCWGG	2 cut(s)	260, 340
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	160, 237
BfaI	CTAG	1 cut(s)	41
Bme1390I	CCNGG	3 cut(s)	222, 260, 340
Bme18I	GGWCC	3 cut(s)	277, 393, 403
BmgT120I	GGNCC	3 cut(s)	277, 393, 403
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	3 cut(s)	222, 260, 340
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	220, 381, 463, 663
BsaWI	WCCGGW	2 cut(s)	367, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	2 cut(s)	147, 347
Bse21I	CCTNAGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	694
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	260, 340
BseDI	CCNNGG	4 cut(s)	220, 381, 463, 663
BseGI	GGATG	2 cut(s)	36, 550
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	3 cut(s)	189, 255, 580
BseRI	GAGGAG	7 cut(s)	50, 163, 173, 176, 284, 398, 563
BseXI	GCAGC	1 cut(s)	465
Bsh1236I	CGCG	4 cut(s)	193, 251, 465, 502
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	3 cut(s)	134, 500, 680
BsiSI	CCGG	8 cut(s)	148, 222, 275, 348, 368, 391, 426, 439
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	160, 237
BsnI	GGCC	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	134, 500, 680
Bsp143I	GATC	3 cut(s)	21, 86, 612
Bsp19I	CCATGG	1 cut(s)	663
Bsp68I	TCGCGA	1 cut(s)	502
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	188, 256, 579
BspFNI	CGCG	4 cut(s)	193, 251, 465, 502
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	16
BsrBI	CCGCTC	2 cut(s)	119, 378
BsrDI	GCAATG	1 cut(s)	694
BsrFI	RCCGGY	2 cut(s)	147, 347
BssAI	RCCGGY	2 cut(s)	147, 347
BssECI	CCNNGG	4 cut(s)	220, 381, 463, 663
BssMI	GATC	3 cut(s)	21, 86, 612
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	663
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	260, 340
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	4 cut(s)	149, 345, 349, 500
BstDEI	CTNAG	3 cut(s)	175, 264, 566
BstDSI	CCRYGG	2 cut(s)	463, 663
BstF5I	GGATG	2 cut(s)	36, 550
BstFNI	CGCG	4 cut(s)	193, 251, 465, 502
BstHHI	GCGC	4 cut(s)	166, 195, 251, 658
BstKTI	GATC	3 cut(s)	24, 89, 615
BstMAI	GTCTC	2 cut(s)	160, 237
BstMBI	GATC	3 cut(s)	21, 86, 612
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 246, 255, 459, 462, 684
BstNI	CCWGG	2 cut(s)	260, 340
BstSCI	CCNGG	3 cut(s)	220, 258, 338
BstUI	CGCG	4 cut(s)	193, 251, 465, 502
BstV1I	GCAGC	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	379
Bsu36I	CCTNAGG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	2 cut(s)	463, 663
BtsCI	GGATG	2 cut(s)	36, 550
BtuMI	TCGCGA	1 cut(s)	502
Cac8I	GCNNGC	4 cut(s)	149, 345, 349, 500
CfoI	GCGC	4 cut(s)	166, 195, 251, 658
Cfr10I	RCCGGY	2 cut(s)	147, 347
Cfr13I	GGNCC	3 cut(s)	277, 393, 403
Cfr42I	CCGCGG	1 cut(s)	466
CpoI	CGGWCCG	1 cut(s)	393
CseI	GACGC	2 cut(s)	119, 445
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CspI	CGGWCCG	1 cut(s)	393
CviAII	CATG	1 cut(s)	664
DdeI	CTNAG	3 cut(s)	175, 264, 566
DpnI	GATC	3 cut(s)	23, 88, 614
DpnII	GATC	3 cut(s)	21, 86, 612
DrdI	GACNNNNNNGTC	2 cut(s)	421, 614
DseDI	GACNNNNNNGTC	2 cut(s)	421, 614
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	6 cut(s)	65, 255, 278, 444, 534, 633
Ecl136II	GAGCTC	3 cut(s)	132, 498, 678
Eco130I	CCWWGG	1 cut(s)	663
Eco147I	AGGCCT	1 cut(s)	180
Eco24I	GRGCYC	3 cut(s)	134, 500, 680
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	3 cut(s)	277, 393, 403
Eco53kI	GAGCTC	3 cut(s)	132, 498, 678
Eco81I	CCTNAGG	1 cut(s)	175
EcoICRI	GAGCTC	3 cut(s)	132, 498, 678
EcoRI	GAATTC	2 cut(s)	490, 527
EcoRII	CCWGG	2 cut(s)	258, 338
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	663
EcoT38I	GRGCYC	3 cut(s)	134, 500, 680
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	1 cut(s)	667
FaiI	YATR	2 cut(s)	537, 665
FatI	CATG	1 cut(s)	663
FauI	CCCGC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	650
FokI	GGATG	2 cut(s)	23, 557
FriOI	GRGCYC	3 cut(s)	134, 500, 680
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	4 cut(s)	165, 194, 250, 657
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	8 cut(s)	148, 222, 275, 348, 368, 391, 426, 439
HgaI	GACGC	2 cut(s)	119, 445
HhaI	GCGC	4 cut(s)	166, 195, 251, 658
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	667
Hin6I	GCGC	4 cut(s)	164, 193, 249, 656
HinP1I	GCGC	4 cut(s)	164, 193, 249, 656
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	2 cut(s)	353, 398
HpaII	CCGG	8 cut(s)	148, 222, 275, 348, 368, 391, 426, 439
HphI	GGTGA	2 cut(s)	223, 536
Hpy166II	GTNNAC	3 cut(s)	104, 589, 651
Hpy188I	TCNGA	7 cut(s)	86, 208, 382, 397, 403, 569, 675
Hpy188III	TCNNGA	4 cut(s)	127, 412, 501, 590
Hpy8I	GTNNAC	3 cut(s)	104, 589, 651
Hpy99I	CGWCG	7 cut(s)	13, 50, 239, 596, 611, 620, 626
HpyAV	CCTTC	3 cut(s)	177, 325, 590
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 246, 255, 459, 462, 684
HpyF3I	CTNAG	3 cut(s)	175, 264, 566
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	667
HspAI	GCGC	4 cut(s)	164, 193, 249, 656
KroI	GCCGGC	2 cut(s)	147, 347
KroNI	GCCGGC	2 cut(s)	149, 349
KspI	CCGCGG	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	21, 86, 612
LmnI	GCTCC	7 cut(s)	63, 124, 230, 291, 383, 556, 683
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	23, 88, 614
MbiI	CCGCTC	2 cut(s)	119, 378
MboI	GATC	3 cut(s)	21, 86, 612
MboII	GAAGA	3 cut(s)	25, 379, 572
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	3 cut(s)	134, 500, 680
MluCI	AATT	4 cut(s)	200, 490, 513, 527
MlyI	GAGTC	2 cut(s)	362, 392
MmeI	TCCRAC	2 cut(s)	231, 420
MreI	CGCCGGCG	1 cut(s)	347
MroNI	GCCGGC	2 cut(s)	147, 347
MroXI	GAANNNNTTC	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	8 cut(s)	148, 222, 275, 348, 368, 391, 426, 439
MspR9I	CCNGG	3 cut(s)	222, 260, 340
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	2 cut(s)	260, 340
MvnI	CGCG	4 cut(s)	193, 251, 465, 502
MwoI	GCNNNNNNNGC	6 cut(s)	50, 246, 255, 459, 462, 684
NaeI	GCCGGC	2 cut(s)	149, 349
NciI	CCSGG	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	3 cut(s)	21, 86, 612
NgoMIV	GCCGGC	2 cut(s)	147, 347
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	229
NruI	TCGCGA	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	4 cut(s)	318, 597, 612, 621
PdiI	GCCGGC	2 cut(s)	149, 349
PdmI	GAANNNNTTC	1 cut(s)	579
PleI	GAGTC	2 cut(s)	361, 392
PpsI	GAGTC	2 cut(s)	361, 392
Psp124BI	GAGCTC	3 cut(s)	134, 500, 680
Psp6I	CCWGG	2 cut(s)	258, 338
PspGI	CCWGG	2 cut(s)	258, 338
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	3 cut(s)	277, 393, 403
RruI	TCGCGA	1 cut(s)	502
Rsr2I	CGGWCCG	1 cut(s)	393
RsrII	CGGWCCG	1 cut(s)	393
SacI	GAGCTC	3 cut(s)	134, 500, 680
SacII	CCGCGG	1 cut(s)	466
Sau3AI	GATC	3 cut(s)	21, 86, 612
Sau96I	GGNCC	3 cut(s)	277, 393, 403
SchI	GAGTC	2 cut(s)	362, 392
ScrFI	CCNGG	3 cut(s)	222, 260, 340
SduI	GDGCHC	3 cut(s)	134, 500, 680
SfaNI	GCATC	1 cut(s)	339
Sfr303I	CCGCGG	1 cut(s)	466
SgrAI	CRCCGGYG	1 cut(s)	347
SgrBI	CCGCGG	1 cut(s)	466
SinI	GGWCC	3 cut(s)	277, 393, 403
Sse9I	AATT	4 cut(s)	200, 490, 513, 527
SseBI	AGGCCT	1 cut(s)	180
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	3 cut(s)	134, 500, 680
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	220, 258, 338
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	5 cut(s)	270, 333, 494, 531, 630
TasI	AATT	4 cut(s)	200, 490, 513, 527
TauI	GCSGC	9 cut(s)	81, 116, 119, 147, 378, 465, 475, 488, 687
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	25, 588
TspGWI	ACGGA	2 cut(s)	89, 217
VpaK11BI	GGWCC	3 cut(s)	277, 393, 403
XapI	RAATTY	3 cut(s)	200, 490, 527
XmiI	GTMKAC	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.