Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013592

Physical Location & Seq

Genomic Coordinates Forward (+)

16231474 .. 16232261

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG183500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTATCGTCGGCGATTGTGATCCTCGTCCTCTTCATCCTAGCCGTCGTTGCTTTGCTCCTCTCCTACTACCTCCGCCGCCTCCGATCACAACCTCTCCGTCAACCAGACGCCGCCGCGCCTGTCCAGAGCTCACACTCTCGCCGCCGGCAAGTCTCTCCTGAGCCTTCCTCCGCCGGCCTCCTCCTCCCGCGCTTCAAATTCTCCGACCTGAAACGCCCCGGCTCCGTCACCGTCGGCGGAGACTGCTCGATTTGCCTGGCGGAGTTCGAGCCGGACCACCAGCTCCGCCTCCTCCCTCTCTGCCTCCACGCCTTCCACGAGGATTGCATCGACACCTGGCTCGCCGGCGAGTCGCTGATTTGTCCGGTTTGCCGCGCCGAGGTCTTCCGGTCCGACTCGGACCTCCTCCAGACAGCCTCGTCCGGCGGAAGCTTCCGGCTGGATATCGGCAGCGTCAGCCGCGGACTGCGGCAAGACACGGCGGCGAATTCGAGCTCGCGAACTCACTCAATTCGCGGAGCTGAATTCGAGTATGTTGTGGATGAGGAGTGGGAGCTTCAACTCAGAGATGCGGTTCTTCCTGTTCACGACGAAGGAGAGGACGACGAGATCGTCGCCGTCGTTATCGACAGCCAACCTCCGCCGTCTACGGCGCAAACCATGGAGTATCAGAGCTCCTGCGGCATGATTTTCACAGGAAGTAGCCGTCGTTGGACGGAGTTATCCGAGGGACTGGAAATGATTCACCGGTGGCTATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

254

Amino Acids

28.16

Weight (kDa)

5.08

Isoelectric Point (pI)

74.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	82 - 126	3.1e-12	Ring finger domain
zf-RING_11	PF17123	82 - 111	1.1e-09	RING-like zinc finger
zf-RING_5	PF14634	82 - 126	9.2e-06	zinc-RING finger domain
zf-C3HC4	PF00097	83 - 125	7.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	83 - 123	9.9e-07	RING-type zinc-finger
zf-C3HC4_2	PF13923	83 - 125	4.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15850
rosa_chinensis	RchiOBHm_Chr2g0168321
rosa_laevigata	RLG00000017407 RLG00000021766
rosa_multiflora	Rmu_sc0001170.1_g000006 Rmu_sc0003354.1_g000015 Rmu_sc0006734.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083150
rosa_rugosa	Rorug02G0126700 Rorug02G0532600
rosa_samantha	Rh2AG177400 Rh2BG185400 Rh2BG615200 Rh2CG582900 Rh2DG183500 Rh2DG625400
rosa_wichuraiana	Rw2G013920 Rw2G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	421, 614
AccI	GTMKAC	1 cut(s)	650
AccII	CGCG	6 cut(s)	119, 193, 378, 465, 502, 519
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	3 cut(s)	200, 490, 527
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgeI	ACCGGT	1 cut(s)	750
AgsI	TTSAA	2 cut(s)	199, 563
AjnI	CCWGG	2 cut(s)	258, 338
AluBI	AGCT	7 cut(s)	132, 286, 435, 498, 524, 559, 678
AluI	AGCT	7 cut(s)	132, 286, 435, 498, 524, 559, 678
Alw21I	GWGCWC	3 cut(s)	134, 500, 680
Alw26I	GTCTC	2 cut(s)	160, 237
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	453
ApoI	RAATTY	3 cut(s)	200, 490, 527
AsiGI	ACCGGT	1 cut(s)	750
Asp700I	GAANNNNTTC	1 cut(s)	744
AspLEI	GCGC	4 cut(s)	121, 195, 380, 658
AspS9I	GGNCC	3 cut(s)	277, 393, 403
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	223, 740
AvaII	GGWCC	3 cut(s)	277, 393, 403
BanII	GRGCYC	3 cut(s)	134, 500, 680
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	3 cut(s)	134, 500, 680
BbvI	GCAGC	1 cut(s)	465
BceAI	ACGGC	6 cut(s)	29, 498, 605, 631, 669, 693
BciT130I	CCWGG	2 cut(s)	260, 340
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	160, 237
BfaI	CTAG	1 cut(s)	41
Bme1390I	CCNGG	3 cut(s)	222, 260, 340
Bme18I	GGWCC	3 cut(s)	277, 393, 403
BmgT120I	GGNCC	3 cut(s)	277, 393, 403
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	3 cut(s)	222, 260, 340
BmsI	GCATC	2 cut(s)	339, 562
BpiI	GAAGAC	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	5 cut(s)	220, 381, 463, 663, 729
BsaWI	WCCGGW	3 cut(s)	367, 390, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	4 cut(s)	147, 176, 347, 750
Bse1I	ACTGG	1 cut(s)	741
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	260, 340
BseDI	CCNNGG	5 cut(s)	220, 381, 463, 663, 729
BseGI	GGATG	2 cut(s)	36, 550
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	153, 580
BseNI	ACTGG	1 cut(s)	741
BseRI	GAGGAG	6 cut(s)	50, 173, 176, 284, 398, 563
BseXI	GCAGC	1 cut(s)	465
Bsh1236I	CGCG	6 cut(s)	119, 193, 378, 465, 502, 519
BshFI	GGCC	1 cut(s)	180
BshTI	ACCGGT	1 cut(s)	750
BsiHKAI	GWGCWC	3 cut(s)	134, 500, 680
BslFI	GGGAC	1 cut(s)	747
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	160, 237
BsmFI	GGGAC	1 cut(s)	747
BsnI	GGCC	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	134, 500, 680
Bsp143I	GATC	3 cut(s)	21, 86, 612
Bsp19I	CCATGG	1 cut(s)	663
Bsp68I	TCGCGA	1 cut(s)	502
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	2 cut(s)	154, 579
BspFNI	CGCG	6 cut(s)	119, 193, 378, 465, 502, 519
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	16
BsrFI	RCCGGY	4 cut(s)	147, 176, 347, 750
BsrI	ACTGG	1 cut(s)	741
BssAI	RCCGGY	4 cut(s)	147, 176, 347, 750
BssECI	CCNNGG	5 cut(s)	220, 381, 463, 663, 729
BssMI	GATC	3 cut(s)	21, 86, 612
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	663
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	260, 340
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	5 cut(s)	149, 178, 345, 349, 500
BstDEI	CTNAG	2 cut(s)	162, 566
BstDSI	CCRYGG	2 cut(s)	463, 663
BstF5I	GGATG	2 cut(s)	36, 550
BstFNI	CGCG	6 cut(s)	119, 193, 378, 465, 502, 519
BstHHI	GCGC	4 cut(s)	121, 195, 380, 658
BstKTI	GATC	3 cut(s)	24, 89, 615
BstMAI	GTCTC	2 cut(s)	160, 237
BstMBI	GATC	3 cut(s)	21, 86, 612
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 246, 255, 459, 462, 684
BstNI	CCWGG	2 cut(s)	260, 340
BstSCI	CCNGG	3 cut(s)	220, 258, 338
BstUI	CGCG	6 cut(s)	119, 193, 378, 465, 502, 519
BstV1I	GCAGC	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	2 cut(s)	463, 663
BtsCI	GGATG	2 cut(s)	36, 550
BtuMI	TCGCGA	1 cut(s)	502
Cac8I	GCNNGC	5 cut(s)	149, 178, 345, 349, 500
CfoI	GCGC	4 cut(s)	121, 195, 380, 658
Cfr10I	RCCGGY	4 cut(s)	147, 176, 347, 750
Cfr13I	GGNCC	3 cut(s)	277, 393, 403
Cfr42I	CCGCGG	1 cut(s)	466
CpoI	CGGWCCG	1 cut(s)	393
CseI	GACGC	2 cut(s)	119, 445
CspAI	ACCGGT	1 cut(s)	750
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CspI	CGGWCCG	1 cut(s)	393
CviAII	CATG	2 cut(s)	664, 688
DdeI	CTNAG	2 cut(s)	162, 566
DpnI	GATC	3 cut(s)	23, 88, 614
DpnII	GATC	3 cut(s)	21, 86, 612
DrdI	GACNNNNNNGTC	2 cut(s)	421, 614
DseDI	GACNNNNNNGTC	2 cut(s)	421, 614
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	7 cut(s)	65, 163, 255, 278, 278, 444, 633
Ecl136II	GAGCTC	3 cut(s)	132, 498, 678
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	3 cut(s)	134, 500, 680
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	3 cut(s)	277, 393, 403
Eco53kI	GAGCTC	3 cut(s)	132, 498, 678
EcoICRI	GAGCTC	3 cut(s)	132, 498, 678
EcoRI	GAATTC	2 cut(s)	490, 527
EcoRII	CCWGG	2 cut(s)	258, 338
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	663
EcoT38I	GRGCYC	3 cut(s)	134, 500, 680
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	2 cut(s)	667, 691
FaiI	YATR	3 cut(s)	537, 665, 689
FaqI	GGGAC	1 cut(s)	747
FatI	CATG	2 cut(s)	663, 687
FauI	CCCGC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	650
FokI	GGATG	2 cut(s)	23, 557
FriOI	GRGCYC	3 cut(s)	134, 500, 680
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	4 cut(s)	120, 194, 379, 657
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	180
HgaI	GACGC	2 cut(s)	119, 445
HhaI	GCGC	4 cut(s)	121, 195, 380, 658
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	667, 691
Hin6I	GCGC	4 cut(s)	119, 193, 378, 656
HinP1I	GCGC	4 cut(s)	119, 193, 378, 656
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	3 cut(s)	353, 398, 745
HphI	GGTGA	2 cut(s)	223, 740
Hpy166II	GTNNAC	3 cut(s)	104, 589, 651
Hpy188I	TCNGA	7 cut(s)	86, 208, 397, 403, 569, 675, 730
Hpy188III	TCNNGA	6 cut(s)	127, 161, 412, 501, 590, 762
Hpy8I	GTNNAC	3 cut(s)	104, 589, 651
Hpy99I	CGWCG	8 cut(s)	13, 50, 239, 596, 611, 620, 626, 714
HpyAV	CCTTC	3 cut(s)	177, 325, 590
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 246, 255, 459, 462, 684
HpyF3I	CTNAG	2 cut(s)	162, 566
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	667, 691
HspAI	GCGC	4 cut(s)	119, 193, 378, 656
KroI	GCCGGC	3 cut(s)	147, 176, 347
KroNI	GCCGGC	3 cut(s)	149, 178, 349
KspI	CCGCGG	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	21, 86, 612
LmnI	GCTCC	6 cut(s)	63, 230, 291, 521, 556, 683
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	2 cut(s)	339, 562
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	23, 88, 614
MboI	GATC	3 cut(s)	21, 86, 612
MboII	GAAGA	3 cut(s)	25, 379, 572
MhlI	GDGCHC	3 cut(s)	134, 500, 680
MluCI	AATT	4 cut(s)	200, 490, 513, 527
MlyI	GAGTC	2 cut(s)	362, 392
MmeI	TCCRAC	3 cut(s)	231, 420, 695
MreI	CGCCGGCG	1 cut(s)	347
MroNI	GCCGGC	3 cut(s)	147, 176, 347
MroXI	GAANNNNTTC	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	465
MspR9I	CCNGG	3 cut(s)	222, 260, 340
MvaI	CCWGG	2 cut(s)	260, 340
MvnI	CGCG	6 cut(s)	119, 193, 378, 465, 502, 519
MwoI	GCNNNNNNNGC	6 cut(s)	50, 246, 255, 459, 462, 684
NaeI	GCCGGC	3 cut(s)	149, 178, 349
NciI	CCSGG	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	3 cut(s)	21, 86, 612
NgoMIV	GCCGGC	3 cut(s)	147, 176, 347
NlaIII	CATG	2 cut(s)	667, 691
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	229
NruI	TCGCGA	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 612, 621
PdiI	GCCGGC	3 cut(s)	149, 178, 349
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	745
PinAI	ACCGGT	1 cut(s)	750
PleI	GAGTC	2 cut(s)	361, 392
PpsI	GAGTC	2 cut(s)	361, 392
Psp124BI	GAGCTC	3 cut(s)	134, 500, 680
Psp6I	CCWGG	2 cut(s)	258, 338
PspGI	CCWGG	2 cut(s)	258, 338
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	3 cut(s)	277, 393, 403
RruI	TCGCGA	1 cut(s)	502
Rsr2I	CGGWCCG	1 cut(s)	393
RsrII	CGGWCCG	1 cut(s)	393
SacI	GAGCTC	3 cut(s)	134, 500, 680
SacII	CCGCGG	1 cut(s)	466
Sau3AI	GATC	3 cut(s)	21, 86, 612
Sau96I	GGNCC	3 cut(s)	277, 393, 403
SchI	GAGTC	2 cut(s)	362, 392
ScrFI	CCNGG	3 cut(s)	222, 260, 340
SduI	GDGCHC	3 cut(s)	134, 500, 680
SfaNI	GCATC	2 cut(s)	339, 562
Sfr303I	CCGCGG	1 cut(s)	466
SgrAI	CRCCGGYG	2 cut(s)	347, 750
SgrBI	CCGCGG	1 cut(s)	466
SinI	GGWCC	3 cut(s)	277, 393, 403
Sse9I	AATT	4 cut(s)	200, 490, 513, 527
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	3 cut(s)	134, 500, 680
StyD4I	CCNGG	3 cut(s)	220, 258, 338
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	6 cut(s)	251, 270, 333, 494, 531, 630
TasI	AATT	4 cut(s)	200, 490, 513, 527
TauI	GCSGC	9 cut(s)	81, 116, 119, 147, 378, 465, 475, 488, 687
TfiI	GAWTC	1 cut(s)	745
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	3 cut(s)	89, 217, 734
VpaK11BI	GGWCC	3 cut(s)	277, 393, 403
XapI	RAATTY	3 cut(s)	200, 490, 527
XmiI	GTMKAC	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.