Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013592

Physical Location & Seq

Genomic Coordinates Forward (+)

5875310 .. 5875978

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCGTCGCCGGCGGTTGTGCTCCTCATCCTCTTGATCCTGGTCGTCGCTGCTTCACTCCTCCTCTACTACCTCCGCCGATCACAACCTGTCCGTCACTCCGCCAACGCCGCCGTGCCGCTGCAGCACTCACAGTCTCGCCGCCGGCAAGTCTCTCCTGCTCCTTCCTCCTCAGGCCTCCTCCTCCCGCGGTTCAAATTCTCCGACCTGAAACGCCCTGGCTCCGTCACCGTCGGAGGAGACTGCGCGATTTGCCTGGCGGAGTTCGAGCCGGAGCACCAGCTCCGCCTCCTCCCTCTCTGCCTCCACGCCTTCCACGTGGATTGCATCGACACCTGGCTCGCCGGCGAGTCGCTGATTTGTCCAGTTTGCCGCGCCGAGGTCTTCCGGTCCGACTCGGACCTCCTCCTCGGACAGCCTCCTCCGCCGGCGGAAGCTTCCGGCTGGCGATCGGCAACGTCAGCCGCGGCCGGCGTCAGGACAATTCGAGCTCGCGAACTCACTCAATTGGCGGAGGTGAATTCGAGTATGTTGTGGATGAGGAATGGGAGCTTCAACTCAGAGATGCGGTTCACGACGTCGAAGGAGAGGACGACGAGATCGTCGCCGTCGTTATCGAAAGCCAACCTCCGCCGTCTACGGTGGAGTATCAGAGCTCCTGCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

222

Amino Acids

24.4

Weight (kDa)

10.27

Isoelectric Point (pI)

78.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	81 - 125	5.4e-12	Ring finger domain
zf-RING_11	PF17123	81 - 110	1e-09	RING-like zinc finger
zf-C3HC4	PF00097	82 - 124	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	98 - 125	7.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15850
rosa_chinensis	RchiOBHm_Chr2g0168321
rosa_laevigata	RLG00000017407 RLG00000021766
rosa_multiflora	Rmu_sc0001170.1_g000006 Rmu_sc0003354.1_g000015 Rmu_sc0006734.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083150
rosa_rugosa	Rorug02G0126700 Rorug02G0532600
rosa_samantha	Rh2AG177400 Rh2BG185400 Rh2BG615200 Rh2CG582900 Rh2DG183500 Rh2DG625400
rosa_wichuraiana	Rw2G013920 Rw2G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	601
AatII	GACGTC	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	637
AccII	CGCG	5 cut(s)	190, 248, 375, 467, 495
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	2 cut(s)	197, 520
AcvI	CACGTG	1 cut(s)	319
AcyI	GRCGYC	2 cut(s)	474, 578
AfiI	CCNNNNNNNGG	2 cut(s)	379, 477
AgsI	TTSAA	2 cut(s)	196, 556
AjnI	CCWGG	4 cut(s)	39, 217, 255, 335
AluBI	AGCT	5 cut(s)	283, 437, 491, 552, 656
AluI	AGCT	5 cut(s)	283, 437, 491, 552, 656
Alw21I	GWGCWC	4 cut(s)	24, 279, 493, 658
Alw26I	GTCTC	3 cut(s)	141, 157, 234
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	2 cut(s)	175, 468
ApeKI	GCWGC	3 cut(s)	50, 121, 124
ApoI	RAATTY	2 cut(s)	197, 520
AspLEI	GCGC	2 cut(s)	248, 377
AspS9I	GGNCC	2 cut(s)	390, 400
AsuHPI	GGTGA	2 cut(s)	220, 529
AvaII	GGWCC	2 cut(s)	390, 400
AxyI	CCTNAGG	1 cut(s)	172
BanII	GRGCYC	2 cut(s)	493, 658
BbrPI	CACGTG	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	4 cut(s)	24, 279, 493, 658
BbvI	GCAGC	3 cut(s)	37, 108, 136
BceAI	ACGGC	3 cut(s)	98, 592, 618
BciT130I	CCWGG	4 cut(s)	41, 219, 257, 337
BcoDI	GTCTC	3 cut(s)	141, 157, 234
BfmI	CTRYAG	1 cut(s)	122
Bme1390I	CCNGG	4 cut(s)	41, 219, 257, 337
Bme18I	GGWCC	2 cut(s)	390, 400
BmgT120I	GGNCC	2 cut(s)	390, 400
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	4 cut(s)	41, 219, 257, 337
BmsI	GCATC	2 cut(s)	336, 555
BpiI	GAAGAC	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	474, 578
BsaJI	CCNNGG	5 cut(s)	188, 217, 378, 409, 465
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 477
Bse118I	RCCGGY	5 cut(s)	10, 144, 344, 427, 470
Bse1I	ACTGG	1 cut(s)	365
Bse21I	CCTNAGG	1 cut(s)	172
BseBI	CCWGG	4 cut(s)	41, 219, 257, 337
BseDI	CCNNGG	5 cut(s)	188, 217, 378, 409, 465
BseGI	GGATG	2 cut(s)	27, 543
BseLI	CCNNNNNNNGG	2 cut(s)	379, 477
BseMII	CTCAG	2 cut(s)	186, 573
BseNI	ACTGG	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	468
BseXI	GCAGC	3 cut(s)	37, 108, 136
Bsh1236I	CGCG	5 cut(s)	190, 248, 375, 467, 495
Bsh1285I	CGRYCG	2 cut(s)	452, 471
BshFI	GGCC	2 cut(s)	177, 470
BsiEI	CGRYCG	2 cut(s)	452, 471
BsiHKAI	GWGCWC	4 cut(s)	24, 279, 493, 658
BsiSI	CCGG	8 cut(s)	11, 145, 272, 345, 388, 428, 441, 471
BslI	CCNNNNNNNGG	2 cut(s)	379, 477
BsmAI	GTCTC	3 cut(s)	141, 157, 234
BsnI	GGCC	2 cut(s)	177, 470
Bsp1286I	GDGCHC	4 cut(s)	24, 279, 493, 658
Bsp143I	GATC	4 cut(s)	36, 80, 449, 599
Bsp68I	TCGCGA	1 cut(s)	495
BspANI	GGCC	2 cut(s)	177, 470
BspCNI	CTCAG	2 cut(s)	185, 572
BspFNI	CGCG	5 cut(s)	190, 248, 375, 467, 495
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	126
BspPI	GGATC	1 cut(s)	31
BsrFI	RCCGGY	5 cut(s)	10, 144, 344, 427, 470
BsrI	ACTGG	1 cut(s)	365
BssAI	RCCGGY	5 cut(s)	10, 144, 344, 427, 470
BssECI	CCNNGG	5 cut(s)	188, 217, 378, 409, 465
BssMI	GATC	4 cut(s)	36, 80, 449, 599
BssNI	GRCGYC	2 cut(s)	474, 578
Bst2UI	CCWGG	4 cut(s)	41, 219, 257, 337
Bst4CI	ACNGT	3 cut(s)	135, 232, 642
BstACI	GRCGYC	2 cut(s)	474, 578
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	8 cut(s)	12, 146, 342, 346, 429, 446, 472, 493
BstDEI	CTNAG	2 cut(s)	172, 559
BstDSI	CCRYGG	2 cut(s)	188, 465
BstF5I	GGATG	2 cut(s)	27, 543
BstFNI	CGCG	5 cut(s)	190, 248, 375, 467, 495
BstHHI	GCGC	2 cut(s)	248, 377
BstKTI	GATC	4 cut(s)	39, 83, 452, 602
BstMAI	GTCTC	3 cut(s)	141, 157, 234
BstMBI	GATC	4 cut(s)	36, 80, 449, 599
BstMCI	CGRYCG	2 cut(s)	452, 471
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 124, 252, 424, 461, 662
BstNI	CCWGG	4 cut(s)	41, 219, 257, 337
BstSCI	CCNGG	4 cut(s)	39, 217, 255, 335
BstSFI	CTRYAG	1 cut(s)	122
BstUI	CGCG	5 cut(s)	190, 248, 375, 467, 495
BstV1I	GCAGC	3 cut(s)	37, 108, 136
BstV2I	GAAGAC	1 cut(s)	376
BstZI	CGGCCG	1 cut(s)	468
Bsu36I	CCTNAGG	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	177, 470
BtgI	CCRYGG	2 cut(s)	188, 465
BtsCI	GGATG	2 cut(s)	27, 543
BtuMI	TCGCGA	1 cut(s)	495
Cac8I	GCNNGC	8 cut(s)	12, 146, 342, 346, 429, 446, 472, 493
CfoI	GCGC	2 cut(s)	248, 377
Cfr10I	RCCGGY	5 cut(s)	10, 144, 344, 427, 470
Cfr13I	GGNCC	2 cut(s)	390, 400
Cfr42I	CCGCGG	2 cut(s)	191, 468
CpoI	CGGWCCG	1 cut(s)	390
CseI	GACGC	1 cut(s)	463
CspCI	CAANNNNNGTGG	2 cut(s)	305, 340
CspI	CGGWCCG	1 cut(s)	390
CviAII	CATG	1 cut(s)	666
DdeI	CTNAG	2 cut(s)	172, 559
DpnI	GATC	4 cut(s)	38, 82, 451, 601
DpnII	GATC	4 cut(s)	36, 80, 449, 599
DrdI	GACNNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	468
EagI	CGGCCG	1 cut(s)	468
EciI	GGCGGA	8 cut(s)	65, 91, 275, 275, 414, 446, 527, 620
Ecl136II	GAGCTC	2 cut(s)	491, 656
EclXI	CGGCCG	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	493, 658
Eco47I	GGWCC	2 cut(s)	390, 400
Eco52I	CGGCCG	1 cut(s)	468
Eco53kI	GAGCTC	2 cut(s)	491, 656
Eco72I	CACGTG	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	172
EcoICRI	GAGCTC	2 cut(s)	491, 656
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	4 cut(s)	39, 217, 255, 335
EcoT38I	GRGCYC	2 cut(s)	493, 658
FaeI	CATG	1 cut(s)	669
FaiI	YATR	2 cut(s)	530, 667
FatI	CATG	1 cut(s)	665
FauI	CCCGC	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	637
FokI	GGATG	2 cut(s)	14, 550
FriOI	GRGCYC	2 cut(s)	493, 658
GlaI	GCGC	2 cut(s)	247, 376
HaeIII	GGCC	2 cut(s)	177, 470
HapII	CCGG	8 cut(s)	11, 145, 272, 345, 388, 428, 441, 471
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	2 cut(s)	248, 377
Hin1I	GRCGYC	2 cut(s)	474, 578
Hin1II	CATG	1 cut(s)	669
Hin6I	GCGC	2 cut(s)	246, 375
HinP1I	GCGC	2 cut(s)	246, 375
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	2 cut(s)	350, 395
HpaII	CCGG	8 cut(s)	11, 145, 272, 345, 388, 428, 441, 471
HphI	GGTGA	2 cut(s)	220, 529
Hpy166II	GTNNAC	2 cut(s)	573, 638
Hpy188I	TCNGA	7 cut(s)	205, 236, 394, 400, 413, 562, 653
Hpy188III	TCNNGA	4 cut(s)	34, 478, 494, 574
Hpy8I	GTNNAC	2 cut(s)	573, 638
Hpy99I	CGWCG	8 cut(s)	10, 50, 236, 580, 583, 598, 607, 613
HpyAV	CCTTC	3 cut(s)	174, 322, 577
HpyCH4III	ACNGT	3 cut(s)	135, 232, 642
HpyCH4IV	ACGT	3 cut(s)	318, 458, 578
HpyCH4V	TGCA	2 cut(s)	124, 327
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 124, 252, 424, 461, 662
HpyF3I	CTNAG	2 cut(s)	172, 559
HpySE526I	ACGT	3 cut(s)	318, 458, 578
Hsp92I	GRCGYC	2 cut(s)	474, 578
Hsp92II	CATG	1 cut(s)	669
HspAI	GCGC	2 cut(s)	246, 375
KroI	GCCGGC	5 cut(s)	10, 144, 344, 427, 470
KroNI	GCCGGC	5 cut(s)	12, 146, 346, 429, 472
KspI	CCGCGG	2 cut(s)	191, 468
Kzo9I	GATC	4 cut(s)	36, 80, 449, 599
LmnI	GCTCC	7 cut(s)	27, 166, 227, 274, 288, 549, 661
Lsp1109I	GCAGC	3 cut(s)	37, 108, 136
LweI	GCATC	2 cut(s)	336, 555
MaeII	ACGT	3 cut(s)	318, 458, 578
MaeIII	GTNAC	2 cut(s)	95, 226
MalI	GATC	4 cut(s)	38, 82, 451, 601
MboI	GATC	4 cut(s)	36, 80, 449, 599
MboII	GAAGA	1 cut(s)	376
MfeI	CAATTG	1 cut(s)	506
MhlI	GDGCHC	4 cut(s)	24, 279, 493, 658
MluCI	AATT	4 cut(s)	197, 483, 506, 520
MlyI	GAGTC	2 cut(s)	359, 389
MmeI	TCCRAC	3 cut(s)	214, 228, 417
MreI	CGCCGGCG	3 cut(s)	10, 344, 427
MroNI	GCCGGC	5 cut(s)	10, 144, 344, 427, 470
MspA1I	CMGCKG	3 cut(s)	121, 190, 467
MspI	CCGG	8 cut(s)	11, 145, 272, 345, 388, 428, 441, 471
MspR9I	CCNGG	4 cut(s)	41, 219, 257, 337
MunI	CAATTG	1 cut(s)	506
MvaI	CCWGG	4 cut(s)	41, 219, 257, 337
MvnI	CGCG	5 cut(s)	190, 248, 375, 467, 495
MwoI	GCNNNNNNNGC	6 cut(s)	110, 124, 252, 424, 461, 662
NaeI	GCCGGC	5 cut(s)	12, 146, 346, 429, 472
NdeII	GATC	4 cut(s)	36, 80, 449, 599
NgoMIV	GCCGGC	5 cut(s)	10, 144, 344, 427, 470
NlaIII	CATG	1 cut(s)	669
NlaIV	GGNNCC	1 cut(s)	223
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	95, 226
NruI	TCGCGA	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 599, 608
PdiI	GCCGGC	5 cut(s)	12, 146, 346, 429, 472
Ple19I	CGATCG	1 cut(s)	452
PleI	GAGTC	2 cut(s)	358, 389
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
PpsI	GAGTC	2 cut(s)	358, 389
Ppu21I	YACGTR	1 cut(s)	319
Psp124BI	GAGCTC	2 cut(s)	493, 658
Psp6I	CCWGG	4 cut(s)	39, 217, 255, 335
PspCI	CACGTG	1 cut(s)	319
PspGI	CCWGG	4 cut(s)	39, 217, 255, 335
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	390, 400
PstI	CTGCAG	1 cut(s)	126
PvuI	CGATCG	1 cut(s)	452
RruI	TCGCGA	1 cut(s)	495
Rsr2I	CGGWCCG	1 cut(s)	390
RsrII	CGGWCCG	1 cut(s)	390
SacI	GAGCTC	2 cut(s)	493, 658
SacII	CCGCGG	2 cut(s)	191, 468
Sau3AI	GATC	4 cut(s)	36, 80, 449, 599
Sau96I	GGNCC	2 cut(s)	390, 400
SchI	GAGTC	2 cut(s)	359, 389
ScrFI	CCNGG	4 cut(s)	41, 219, 257, 337
SduI	GDGCHC	4 cut(s)	24, 279, 493, 658
SfaNI	GCATC	2 cut(s)	336, 555
SfcI	CTRYAG	1 cut(s)	122
Sfr303I	CCGCGG	2 cut(s)	191, 468
SgrAI	CRCCGGYG	3 cut(s)	10, 344, 427
SgrBI	CCGCGG	2 cut(s)	191, 468
SinI	GGWCC	2 cut(s)	390, 400
Sse9I	AATT	4 cut(s)	197, 483, 506, 520
SseBI	AGGCCT	1 cut(s)	177
SstI	GAGCTC	2 cut(s)	493, 658
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	39, 217, 255, 335
TaaI	ACNGT	3 cut(s)	135, 232, 642
TaiI	ACGT	3 cut(s)	321, 461, 581
TaqI	TCGA	6 cut(s)	267, 330, 487, 524, 581, 617
TasI	AATT	4 cut(s)	197, 483, 506, 520
TauI	GCSGC	7 cut(s)	113, 121, 144, 375, 467, 470, 665
TseFI	GTSAC	2 cut(s)	95, 226
TseI	GCWGC	3 cut(s)	50, 121, 124
Tsp45I	GTSAC	2 cut(s)	95, 226
TspGWI	ACGGA	2 cut(s)	83, 214
VpaK11BI	GGWCC	2 cut(s)	390, 400
XapI	RAATTY	2 cut(s)	197, 520
XmiI	GTMKAC	1 cut(s)	637
ZraI	GACGTC	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.