Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013592

Physical Location & Seq

Genomic Coordinates Forward (+)

16216142 .. 16217095

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTATCGTCGGCGATTGTGATCCTCATCCTTTTCATCCTAGCCATCGCTGCTTTGCTCCTCTTCTACTATCTCCGCCGCCTCCGATCACAACCTCTCCCTCAACCAGCCGCCGCCGCGCCTGTCCAGAGCTCACATTCTCACAGCCGGCAAGTCTCTCCCGCTCCTTCCTCCGCCGGCCTCCTCCTCCCGCGCTTCAAATTCTCCGACCTGAAACGCCCCGGCTCCGTCACCGTCGGCGGAGACTGCGCGATTTGCCTGGCGGAGTTCGAGCCGGACCACGTGCTCCGCCTCCTCCCTCTCTGCCTCCACGCCTTCCACGTGGATTGCATCGACAACTGGCTCGCCGGCGAGTCGCTGATTTGTCCGGTTTGCCGCGCCGAGGTCTTCCAGTCCGACTCAGACCTCCTCCAGACAGCCTCCGCCGGCGGAAGCTTCCGGCTGGAGATCGGCAGCGTCAGCCGCGGCCGGCGACAAGACACGGCCGCGAATTCGAGCTCGCGAACTCACTCAATTCGCGGAGGTGAATTCGAGTATGTTGTGGATGAGGAGTGGGAGCTTCAACTCAGAGATGCGATTCTTCCGGTTCACGACGAAGGCGAGGACGACGAGATCGTCGCCGTCGTTATCGACGGCCAACCTCCGCCGTCTACGGCGCCAACTTTGGAGCATCAGAGCTCCTGCGGCATGATTTTCACAGGGAGCAGCCGTCGTGGGACGGAGTTATCCGAGGGACTGGAAATGATTTACCGTGTGAAAGAAATCGTCGACTGCTATCAGCAGCAAGACGTTGTTGTTCGGAAAAGTCAGTCAAAGAAAAAGAAGTTAGACCAAGCTCTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

282

Amino Acids

30.78

Weight (kDa)

5.51

Isoelectric Point (pI)

65.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	82 - 126	7.2e-12	Ring finger domain
zf-RING_11	PF17123	82 - 111	2.2e-09	RING-like zinc finger
zf-C3HC4	PF00097	83 - 125	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	95 - 126	8.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15850
rosa_chinensis	RchiOBHm_Chr2g0168321
rosa_laevigata	RLG00000017407 RLG00000021766
rosa_multiflora	Rmu_sc0001170.1_g000006 Rmu_sc0003354.1_g000015 Rmu_sc0006734.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083150
rosa_rugosa	Rorug02G0126700 Rorug02G0532600
rosa_samantha	Rh2AG177400 Rh2BG185400 Rh2BG615200 Rh2CG582900 Rh2DG183500 Rh2DG625400
rosa_wichuraiana	Rw2G013920 Rw2G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	655
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	2 cut(s)	650, 768
AccII	CGCG	8 cut(s)	119, 193, 251, 378, 465, 488, 502, 519
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	3 cut(s)	466, 483, 634
AcsI	RAATTY	3 cut(s)	200, 490, 527
AcvI	CACGTG	2 cut(s)	283, 322
AcyI	GRCGYC	1 cut(s)	656
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	199, 563
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	6 cut(s)	132, 435, 498, 559, 678, 836
AluI	AGCT	6 cut(s)	132, 435, 498, 559, 678, 836
Alw21I	GWGCWC	4 cut(s)	134, 288, 500, 680
Alw26I	GTCTC	2 cut(s)	160, 237
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	4 cut(s)	178, 466, 483, 634
ApeKI	GCWGC	4 cut(s)	50, 453, 705, 781
ApoI	RAATTY	3 cut(s)	200, 490, 527
AspLEI	GCGC	5 cut(s)	121, 195, 251, 380, 658
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	223, 536
AvaII	GGWCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	655
BanII	GRGCYC	3 cut(s)	134, 500, 680
BbrPI	CACGTG	2 cut(s)	283, 322
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	4 cut(s)	134, 288, 500, 680
BbvI	GCAGC	4 cut(s)	37, 465, 717, 793
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	6 cut(s)	498, 605, 631, 649, 669, 693
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	160, 237
BfaI	CTAG	2 cut(s)	41, 839
BfoI	RGCGCY	1 cut(s)	659
Bme1390I	CCNGG	2 cut(s)	222, 260
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	226, 657
BmrFI	CCNGG	2 cut(s)	222, 260
BmsI	GCATC	3 cut(s)	339, 562, 679
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	2 cut(s)	395, 464
BpuMI	CCSGG	1 cut(s)	222
BsaAI	YACGTR	2 cut(s)	283, 322
BsaBI	GATNNNNATC	2 cut(s)	20, 26
BsaHI	GRCGYC	1 cut(s)	656
BsaJI	CCNNGG	4 cut(s)	220, 381, 463, 729
BsaWI	WCCGGW	2 cut(s)	367, 583
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 694, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	5 cut(s)	147, 176, 347, 425, 468
Bse1I	ACTGG	3 cut(s)	344, 391, 741
Bse8I	GATNNNNATC	2 cut(s)	20, 26
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	4 cut(s)	220, 381, 463, 729
BseGI	GGATG	3 cut(s)	27, 36, 550
BseJI	GATNNNNATC	2 cut(s)	20, 26
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	414, 580
BseNI	ACTGG	3 cut(s)	344, 391, 741
BseRI	GAGGAG	6 cut(s)	50, 173, 176, 284, 398, 563
BseX3I	CGGCCG	2 cut(s)	466, 483
BseXI	GCAGC	4 cut(s)	37, 465, 717, 793
Bsh1236I	CGCG	8 cut(s)	119, 193, 251, 378, 465, 488, 502, 519
Bsh1285I	CGRYCG	2 cut(s)	469, 486
BshFI	GGCC	4 cut(s)	180, 468, 485, 636
BshNI	GGYRCC	1 cut(s)	655
BsiEI	CGRYCG	2 cut(s)	469, 486
BsiHKAI	GWGCWC	4 cut(s)	134, 288, 500, 680
BslFI	GGGAC	2 cut(s)	730, 747
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	160, 237
BsmFI	GGGAC	2 cut(s)	730, 747
BsnI	GGCC	4 cut(s)	180, 468, 485, 636
Bsp1286I	GDGCHC	4 cut(s)	134, 288, 500, 680
Bsp143I	GATC	4 cut(s)	21, 86, 447, 612
Bsp68I	TCGCGA	1 cut(s)	502
BspANI	GGCC	4 cut(s)	180, 468, 485, 636
BspCNI	CTCAG	2 cut(s)	413, 579
BspFNI	CGCG	8 cut(s)	119, 193, 251, 378, 465, 488, 502, 519
BspLI	GGNNCC	2 cut(s)	226, 657
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	655
BsrBI	CCGCTC	1 cut(s)	164
BsrFI	RCCGGY	5 cut(s)	147, 176, 347, 425, 468
BsrI	ACTGG	3 cut(s)	344, 391, 741
BssAI	RCCGGY	5 cut(s)	147, 176, 347, 425, 468
BssECI	CCNNGG	4 cut(s)	220, 381, 463, 729
BssMI	GATC	4 cut(s)	21, 86, 447, 612
BssNI	GRCGYC	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	235, 752
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	656
BstBAI	YACGTR	2 cut(s)	283, 322
BstC8I	GCNNGC	7 cut(s)	149, 178, 345, 349, 427, 470, 500
BstDEI	CTNAG	2 cut(s)	400, 566
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	3 cut(s)	27, 36, 550
BstFNI	CGCG	8 cut(s)	119, 193, 251, 378, 465, 488, 502, 519
BstH2I	RGCGCY	1 cut(s)	659
BstHHI	GCGC	5 cut(s)	121, 195, 251, 380, 658
BstKTI	GATC	4 cut(s)	24, 89, 450, 615
BstMAI	GTCTC	2 cut(s)	160, 237
BstMBI	GATC	4 cut(s)	21, 86, 447, 612
BstMCI	CGRYCG	2 cut(s)	469, 486
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 116, 246, 255, 459, 462, 684
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	220, 258
BstUI	CGCG	8 cut(s)	119, 193, 251, 378, 465, 488, 502, 519
BstV1I	GCAGC	4 cut(s)	37, 465, 717, 793
BstV2I	GAAGAC	1 cut(s)	379
BstZI	CGGCCG	2 cut(s)	466, 483
BsuRI	GGCC	4 cut(s)	180, 468, 485, 636
BtgI	CCRYGG	1 cut(s)	463
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	27, 36, 550
BtuMI	TCGCGA	1 cut(s)	502
Cac8I	GCNNGC	7 cut(s)	149, 178, 345, 349, 427, 470, 500
CfoI	GCGC	5 cut(s)	121, 195, 251, 380, 658
Cfr10I	RCCGGY	5 cut(s)	147, 176, 347, 425, 468
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	466
CseI	GACGC	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	1 cut(s)	688
DdeI	CTNAG	2 cut(s)	400, 566
DinI	GGCGCC	1 cut(s)	657
DpnI	GATC	4 cut(s)	23, 88, 449, 614
DpnII	GATC	4 cut(s)	21, 86, 447, 612
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
EaeI	YGGCCR	3 cut(s)	466, 483, 634
EagI	CGGCCG	2 cut(s)	466, 483
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	8 cut(s)	65, 163, 255, 278, 278, 412, 444, 633
Ecl136II	GAGCTC	3 cut(s)	132, 498, 678
EclXI	CGGCCG	2 cut(s)	466, 483
Eco24I	GRGCYC	3 cut(s)	134, 500, 680
Eco47I	GGWCC	1 cut(s)	277
Eco52I	CGGCCG	2 cut(s)	466, 483
Eco53kI	GAGCTC	3 cut(s)	132, 498, 678
Eco72I	CACGTG	2 cut(s)	283, 322
EcoICRI	GAGCTC	3 cut(s)	132, 498, 678
EcoRI	GAATTC	2 cut(s)	490, 527
EcoRII	CCWGG	1 cut(s)	258
EcoT38I	GRGCYC	3 cut(s)	134, 500, 680
EgeI	GGCGCC	1 cut(s)	657
EheI	GGCGCC	1 cut(s)	657
FaeI	CATG	1 cut(s)	691
FaiI	YATR	3 cut(s)	537, 689, 844
FaqI	GGGAC	2 cut(s)	730, 747
FatI	CATG	1 cut(s)	687
FauI	CCCGC	2 cut(s)	169, 198
FblI	GTMKAC	2 cut(s)	650, 768
FokI	GGATG	3 cut(s)	14, 23, 557
FriOI	GRGCYC	3 cut(s)	134, 500, 680
FspBI	CTAG	2 cut(s)	41, 839
GlaI	GCGC	5 cut(s)	120, 194, 250, 379, 657
GsuI	CTGGAG	2 cut(s)	395, 464
HaeII	RGCGCY	1 cut(s)	659
HaeIII	GGCC	4 cut(s)	180, 468, 485, 636
HgaI	GACGC	1 cut(s)	445
HhaI	GCGC	5 cut(s)	121, 195, 251, 380, 658
Hin1I	GRCGYC	1 cut(s)	656
Hin1II	CATG	1 cut(s)	691
Hin6I	GCGC	5 cut(s)	119, 193, 249, 378, 656
HinP1I	GCGC	5 cut(s)	119, 193, 249, 378, 656
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	3 cut(s)	353, 398, 577
HphI	GGTGA	2 cut(s)	223, 536
Hpy166II	GTNNAC	3 cut(s)	589, 651, 769
Hpy188I	TCNGA	8 cut(s)	86, 208, 397, 403, 569, 675, 730, 801
Hpy188III	TCNNGA	4 cut(s)	127, 412, 501, 590
Hpy8I	GTNNAC	3 cut(s)	589, 651, 769
Hpy99I	CGWCG	9 cut(s)	13, 239, 596, 611, 620, 626, 635, 714, 770
HpyAV	CCTTC	3 cut(s)	177, 325, 590
HpyCH4III	ACNGT	2 cut(s)	235, 752
HpyCH4IV	ACGT	3 cut(s)	282, 321, 789
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 116, 246, 255, 459, 462, 684
HpyF3I	CTNAG	2 cut(s)	400, 566
HpySE526I	ACGT	3 cut(s)	282, 321, 789
Hsp92I	GRCGYC	1 cut(s)	656
Hsp92II	CATG	1 cut(s)	691
HspAI	GCGC	5 cut(s)	119, 193, 249, 378, 656
KasI	GGCGCC	1 cut(s)	655
KroI	GCCGGC	5 cut(s)	147, 176, 347, 425, 468
KroNI	GCCGGC	5 cut(s)	149, 178, 349, 427, 470
KspI	CCGCGG	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	21, 86, 447, 612
LmnI	GCTCC	8 cut(s)	63, 169, 230, 291, 556, 667, 683, 702
Lsp1109I	GCAGC	4 cut(s)	37, 465, 717, 793
LweI	GCATC	3 cut(s)	339, 562, 679
MaeI	CTAG	2 cut(s)	41, 839
MaeII	ACGT	3 cut(s)	282, 321, 789
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	4 cut(s)	23, 88, 449, 614
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	4 cut(s)	21, 86, 447, 612
MboII	GAAGA	3 cut(s)	55, 379, 572
MhlI	GDGCHC	4 cut(s)	134, 288, 500, 680
MluCI	AATT	4 cut(s)	200, 490, 513, 527
Mly113I	GGCGCC	1 cut(s)	656
MlyI	GAGTC	2 cut(s)	362, 392
MmeI	TCCRAC	2 cut(s)	231, 420
MreI	CGCCGGCG	2 cut(s)	347, 425
MroNI	GCCGGC	5 cut(s)	147, 176, 347, 425, 468
MspA1I	CMGCKG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	222, 260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	8 cut(s)	119, 193, 251, 378, 465, 488, 502, 519
MwoI	GCNNNNNNNGC	7 cut(s)	50, 116, 246, 255, 459, 462, 684
NaeI	GCCGGC	5 cut(s)	149, 178, 349, 427, 470
NarI	GGCGCC	1 cut(s)	656
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	4 cut(s)	21, 86, 447, 612
NgoMIV	GCCGGC	5 cut(s)	147, 176, 347, 425, 468
NlaIII	CATG	1 cut(s)	691
NlaIV	GGNNCC	2 cut(s)	226, 657
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	229
NruI	TCGCGA	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	4 cut(s)	318, 597, 612, 621
PdiI	GCCGGC	5 cut(s)	149, 178, 349, 427, 470
PfeI	GAWTC	1 cut(s)	577
PleI	GAGTC	2 cut(s)	361, 392
PluTI	GGCGCC	1 cut(s)	659
PmaCI	CACGTG	2 cut(s)	283, 322
PmlI	CACGTG	2 cut(s)	283, 322
PpsI	GAGTC	2 cut(s)	361, 392
Ppu21I	YACGTR	2 cut(s)	283, 322
Psp124BI	GAGCTC	3 cut(s)	134, 500, 680
Psp6I	CCWGG	1 cut(s)	258
PspCI	CACGTG	2 cut(s)	283, 322
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	226, 657
PspPI	GGNCC	1 cut(s)	277
RruI	TCGCGA	1 cut(s)	502
SacI	GAGCTC	3 cut(s)	134, 500, 680
SacII	CCGCGG	1 cut(s)	466
SalI	GTCGAC	1 cut(s)	767
Sau3AI	GATC	4 cut(s)	21, 86, 447, 612
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	362, 392
ScrFI	CCNGG	2 cut(s)	222, 260
SduI	GDGCHC	4 cut(s)	134, 288, 500, 680
SfaNI	GCATC	3 cut(s)	339, 562, 679
SfoI	GGCGCC	1 cut(s)	657
Sfr303I	CCGCGG	1 cut(s)	466
SgrAI	CRCCGGYG	2 cut(s)	347, 425
SgrBI	CCGCGG	1 cut(s)	466
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	4 cut(s)	200, 490, 513, 527
SspDI	GGCGCC	1 cut(s)	655
SspMI	CTAG	2 cut(s)	41, 839
SstI	GAGCTC	3 cut(s)	134, 500, 680
StyD4I	CCNGG	2 cut(s)	220, 258
TaaI	ACNGT	2 cut(s)	235, 752
TaiI	ACGT	3 cut(s)	285, 324, 792
TaqI	TCGA	6 cut(s)	270, 333, 494, 531, 630, 768
TasI	AATT	4 cut(s)	200, 490, 513, 527
TauI	GCSGC	9 cut(s)	81, 113, 116, 119, 378, 465, 468, 488, 687
TfiI	GAWTC	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	4 cut(s)	50, 453, 705, 781
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	2 cut(s)	217, 734
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	3 cut(s)	200, 490, 527
XmiI	GTMKAC	2 cut(s)	650, 768
XspI	CTAG	2 cut(s)	41, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.