Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013592

Physical Location & Seq

Genomic Coordinates Reverse (-)

85485795 .. 85486806

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG625400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCATCGCCGGCTATTGTGCTCCTCATCCTCTTCATCCTGGTCGTCGCTGCTTCACTCCTCCTCTACTACCTCCGCCGATCACAACCTGTCCGTCACTCCGCCAACGCCCCCGTGCCGCTGCAGCACTCACAGTCTCGCCGCCGGCAAGTCTCTCCTGCACCTGATTCCTCCTCCGGCCTCCTCCTCCTCCTCCCGCGGTTCAAATTCTCCGACCTGAAACGCCCTGGCTCAGTCACCGTCGGCGGAGACTGCGCGATTTGCCTGGCGGAGTTCGAGCTGGAGCACCAGCTCCGCCTCCTCCCTCTCTGCCTCCACGCCTTCCACGTGGATTGCATCGACACCTGGCTCGCCGGGGAGTCGCTGATTTGTCCAGTTTGCCGCTCCGTGGTCTTCCGGTCCGACTCGGACCTCCTCCTCCGGACAGCCTCCTCGGCCGGCGGAAGCTTCCGGCTGGCGATCGGCAACGTCAGCCGCGGCCGGAGTCAGGACAATTCGAGCTCCTCGCGAACTCACTCAATTCGCGGAGGTGAATTCGAGTATGTTGTGGATGAGGAATGGGAGCTTCAACTCAGAGATGCGGTTCACGACGTCGAAGAAGGCGAGGACTGCGAGATCGTCGCCGTCGTTATCGACAGCCAACCTCCGCCGTCTACGGTGGAGTATCAGAGCTCCTGCGGCATGATTTTCACAGGGAGTAGCCGTCGTTGGACGGAGCTATCCGAGGGACTGGAAACGATTTACCTGCGGCTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

252

Amino Acids

27.82

Weight (kDa)

5.51

Isoelectric Point (pI)

79.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	84 - 128	1.2e-11	Ring finger domain
zf-RING_11	PF17123	84 - 113	1.2e-08	RING-like zinc finger
zf-C3HC4	PF00097	85 - 127	5.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15850
rosa_chinensis	RchiOBHm_Chr2g0168321
rosa_laevigata	RLG00000017407 RLG00000021766
rosa_multiflora	Rmu_sc0001170.1_g000006 Rmu_sc0003354.1_g000015 Rmu_sc0006734.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083150
rosa_rugosa	Rorug02G0126700 Rorug02G0532600
rosa_samantha	Rh2AG177400 Rh2BG185400 Rh2BG615200 Rh2CG582900 Rh2DG183500 Rh2DG625400
rosa_wichuraiana	Rw2G013920 Rw2G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	753
AccBSI	CCGCTC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	653
AccII	CGCG	5 cut(s)	199, 257, 477, 508, 525
AccIII	TCCGGA	1 cut(s)	420
AcoI	YGGCCR	2 cut(s)	435, 478
AcsI	RAATTY	2 cut(s)	206, 533
AcvI	CACGTG	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	591
AfiI	CCNNNNNNNGG	2 cut(s)	388, 487
AgsI	TTSAA	2 cut(s)	205, 569
AjnI	CCWGG	4 cut(s)	39, 226, 264, 344
AluBI	AGCT	7 cut(s)	280, 292, 447, 501, 565, 672, 718
AluI	AGCT	7 cut(s)	280, 292, 447, 501, 565, 672, 718
Alw21I	GWGCWC	4 cut(s)	24, 288, 503, 674
Alw26I	GTCTC	3 cut(s)	141, 157, 243
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	3 cut(s)	178, 435, 478
ApeKI	GCWGC	3 cut(s)	50, 121, 124
ApoI	RAATTY	2 cut(s)	206, 533
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	399, 409
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	229, 542
AvaII	GGWCC	2 cut(s)	399, 409
BanII	GRGCYC	2 cut(s)	503, 674
BbrPI	CACGTG	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	4 cut(s)	24, 288, 503, 674
BbvI	GCAGC	3 cut(s)	37, 108, 136
BceAI	ACGGC	3 cut(s)	608, 634, 687
BcgI	CGANNNNNNTGC	1 cut(s)	727
BciT130I	CCWGG	4 cut(s)	41, 228, 266, 346
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	141, 157, 243
BfmI	CTRYAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	753
BglI	GCCNNNNNGGC	1 cut(s)	434
Bme1390I	CCNGG	5 cut(s)	41, 228, 266, 346, 355
Bme18I	GGWCC	2 cut(s)	399, 409
BmgT120I	GGNCC	2 cut(s)	399, 409
BmrFI	CCNGG	5 cut(s)	41, 228, 266, 346, 355
BmsI	GCATC	2 cut(s)	345, 568
BpiI	GAAGAC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	355
BsaAI	YACGTR	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	591
BsaJI	CCNNGG	7 cut(s)	197, 226, 354, 387, 432, 475, 723
BsaWI	WCCGGW	2 cut(s)	396, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	688, 718
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 487
Bse118I	RCCGGY	3 cut(s)	10, 144, 437
Bse1I	ACTGG	2 cut(s)	374, 735
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	4 cut(s)	41, 228, 266, 346
BseDI	CCNNGG	7 cut(s)	197, 226, 354, 387, 432, 475, 723
BseGI	GGATG	3 cut(s)	27, 36, 556
BseLI	CCNNNNNNNGG	2 cut(s)	388, 487
BseMII	CTCAG	2 cut(s)	246, 586
BseNI	ACTGG	2 cut(s)	374, 735
BseX3I	CGGCCG	2 cut(s)	435, 478
BseXI	GCAGC	3 cut(s)	37, 108, 136
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	5 cut(s)	199, 257, 477, 508, 525
Bsh1285I	CGRYCG	3 cut(s)	438, 462, 481
BshFI	GGCC	3 cut(s)	180, 437, 480
BsiEI	CGRYCG	3 cut(s)	438, 462, 481
BsiHKAI	GWGCWC	4 cut(s)	24, 288, 503, 674
BsiSI	CCGG	9 cut(s)	11, 145, 177, 354, 397, 421, 438, 451, 481
BslFI	GGGAC	1 cut(s)	741
BslI	CCNNNNNNNGG	2 cut(s)	388, 487
BsmAI	GTCTC	3 cut(s)	141, 157, 243
BsmFI	GGGAC	1 cut(s)	741
BsnI	GGCC	3 cut(s)	180, 437, 480
Bsp1286I	GDGCHC	4 cut(s)	24, 288, 503, 674
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	80, 459, 615
Bsp68I	TCGCGA	1 cut(s)	508
BspANI	GGCC	3 cut(s)	180, 437, 480
BspCNI	CTCAG	2 cut(s)	245, 585
BspEI	TCCGGA	1 cut(s)	420
BspFNI	CGCG	5 cut(s)	199, 257, 477, 508, 525
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	753
BsrBI	CCGCTC	1 cut(s)	384
BsrFI	RCCGGY	3 cut(s)	10, 144, 437
BsrI	ACTGG	2 cut(s)	374, 735
BssAI	RCCGGY	3 cut(s)	10, 144, 437
BssECI	CCNNGG	7 cut(s)	197, 226, 354, 387, 432, 475, 723
BssMI	GATC	3 cut(s)	80, 459, 615
BssNI	GRCGYC	1 cut(s)	591
Bst2UI	CCWGG	4 cut(s)	41, 228, 266, 346
Bst4CI	ACNGT	3 cut(s)	135, 241, 658
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	5 cut(s)	12, 146, 351, 439, 456
BstDEI	CTNAG	2 cut(s)	232, 572
BstDSI	CCRYGG	3 cut(s)	197, 387, 475
BstF5I	GGATG	3 cut(s)	27, 36, 556
BstFNI	CGCG	5 cut(s)	199, 257, 477, 508, 525
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	3 cut(s)	83, 462, 618
BstMAI	GTCTC	3 cut(s)	141, 157, 243
BstMBI	GATC	3 cut(s)	80, 459, 615
BstMCI	CGRYCG	3 cut(s)	438, 462, 481
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 252, 261, 434, 471, 609, 678
BstNI	CCWGG	4 cut(s)	41, 228, 266, 346
BstSCI	CCNGG	5 cut(s)	39, 226, 264, 344, 353
BstSFI	CTRYAG	1 cut(s)	122
BstUI	CGCG	5 cut(s)	199, 257, 477, 508, 525
BstV1I	GCAGC	3 cut(s)	37, 108, 136
BstV2I	GAAGAC	1 cut(s)	385
BstZI	CGGCCG	2 cut(s)	435, 478
BsuRI	GGCC	3 cut(s)	180, 437, 480
BtgI	CCRYGG	3 cut(s)	197, 387, 475
BtsCI	GGATG	3 cut(s)	27, 36, 556
BtuMI	TCGCGA	1 cut(s)	508
BveI	ACCTGC	1 cut(s)	753
Cac8I	GCNNGC	5 cut(s)	12, 146, 351, 439, 456
CfoI	GCGC	1 cut(s)	257
Cfr10I	RCCGGY	3 cut(s)	10, 144, 437
Cfr13I	GGNCC	2 cut(s)	399, 409
Cfr42I	CCGCGG	2 cut(s)	200, 478
CpoI	CGGWCCG	1 cut(s)	399
CspCI	CAANNNNNGTGG	2 cut(s)	314, 349
CspI	CGGWCCG	1 cut(s)	399
CviAII	CATG	1 cut(s)	682
DdeI	CTNAG	2 cut(s)	232, 572
DpnI	GATC	3 cut(s)	82, 461, 617
DpnII	GATC	3 cut(s)	80, 459, 615
EaeI	YGGCCR	2 cut(s)	435, 478
EagI	CGGCCG	2 cut(s)	435, 478
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	7 cut(s)	65, 91, 261, 284, 284, 456, 636
Ecl136II	GAGCTC	2 cut(s)	501, 672
EclXI	CGGCCG	2 cut(s)	435, 478
Eco24I	GRGCYC	2 cut(s)	503, 674
Eco47I	GGWCC	2 cut(s)	399, 409
Eco52I	CGGCCG	2 cut(s)	435, 478
Eco53kI	GAGCTC	2 cut(s)	501, 672
Eco72I	CACGTG	1 cut(s)	328
EcoICRI	GAGCTC	2 cut(s)	501, 672
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	4 cut(s)	39, 226, 264, 344
EcoT38I	GRGCYC	2 cut(s)	503, 674
FaeI	CATG	1 cut(s)	685
FaiI	YATR	2 cut(s)	543, 683
FaqI	GGGAC	1 cut(s)	741
FatI	CATG	1 cut(s)	681
FauI	CCCGC	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	653
FokI	GGATG	3 cut(s)	14, 23, 563
FriOI	GRGCYC	2 cut(s)	503, 674
GlaI	GCGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	180, 437, 480
HapII	CCGG	9 cut(s)	11, 145, 177, 354, 397, 421, 438, 451, 481
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	1 cut(s)	685
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	4 cut(s)	167, 359, 404, 484
HpaII	CCGG	9 cut(s)	11, 145, 177, 354, 397, 421, 438, 451, 481
HphI	GGTGA	2 cut(s)	229, 542
Hpy166II	GTNNAC	2 cut(s)	586, 654
Hpy188I	TCNGA	6 cut(s)	214, 403, 409, 575, 669, 724
Hpy188III	TCNNGA	5 cut(s)	421, 488, 507, 587, 756
Hpy8I	GTNNAC	2 cut(s)	586, 654
Hpy99I	CGWCG	7 cut(s)	50, 245, 593, 596, 623, 629, 708
HpyAV	CCTTC	2 cut(s)	331, 593
HpyCH4III	ACNGT	3 cut(s)	135, 241, 658
HpyCH4IV	ACGT	3 cut(s)	327, 468, 591
HpyCH4V	TGCA	3 cut(s)	124, 161, 336
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 252, 261, 434, 471, 609, 678
HpyF3I	CTNAG	2 cut(s)	232, 572
HpySE526I	ACGT	3 cut(s)	327, 468, 591
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	1 cut(s)	685
HspAI	GCGC	1 cut(s)	255
Kpn2I	TCCGGA	1 cut(s)	420
KroI	GCCGGC	3 cut(s)	10, 144, 437
KroNI	GCCGGC	3 cut(s)	12, 146, 439
KspI	CCGCGG	2 cut(s)	200, 478
Kzo9I	GATC	3 cut(s)	80, 459, 615
LmnI	GCTCC	8 cut(s)	27, 283, 297, 389, 506, 562, 677, 715
Lsp1109I	GCAGC	3 cut(s)	37, 108, 136
LweI	GCATC	2 cut(s)	345, 568
MaeII	ACGT	3 cut(s)	327, 468, 591
MaeIII	GTNAC	2 cut(s)	95, 235
MalI	GATC	3 cut(s)	82, 461, 617
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	3 cut(s)	80, 459, 615
MboII	GAAGA	3 cut(s)	25, 385, 608
MhlI	GDGCHC	4 cut(s)	24, 288, 503, 674
MluCI	AATT	4 cut(s)	206, 493, 519, 533
MlyI	GAGTC	3 cut(s)	368, 398, 493
MmeI	TCCRAC	3 cut(s)	237, 426, 689
MroI	TCCGGA	1 cut(s)	420
MroNI	GCCGGC	3 cut(s)	10, 144, 437
MspA1I	CMGCKG	3 cut(s)	121, 199, 477
MspI	CCGG	9 cut(s)	11, 145, 177, 354, 397, 421, 438, 451, 481
MspR9I	CCNGG	5 cut(s)	41, 228, 266, 346, 355
MvaI	CCWGG	4 cut(s)	41, 228, 266, 346
MvnI	CGCG	5 cut(s)	199, 257, 477, 508, 525
MwoI	GCNNNNNNNGC	7 cut(s)	124, 252, 261, 434, 471, 609, 678
NaeI	GCCGGC	3 cut(s)	12, 146, 439
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	80, 459, 615
NgoMIV	GCCGGC	3 cut(s)	10, 144, 437
NlaIII	CATG	1 cut(s)	685
NmeAIII	GCCGAG	1 cut(s)	413
NmuCI	GTSAC	2 cut(s)	95, 235
NruI	TCGCGA	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 600, 624
PdiI	GCCGGC	3 cut(s)	12, 146, 439
PfeI	GAWTC	1 cut(s)	167
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	3 cut(s)	367, 398, 492
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
PpsI	GAGTC	3 cut(s)	367, 398, 492
Ppu21I	YACGTR	1 cut(s)	328
Psp124BI	GAGCTC	2 cut(s)	503, 674
Psp6I	CCWGG	4 cut(s)	39, 226, 264, 344
PspCI	CACGTG	1 cut(s)	328
PspGI	CCWGG	4 cut(s)	39, 226, 264, 344
PspPI	GGNCC	2 cut(s)	399, 409
PstI	CTGCAG	1 cut(s)	126
PvuI	CGATCG	1 cut(s)	462
RruI	TCGCGA	1 cut(s)	508
Rsr2I	CGGWCCG	1 cut(s)	399
RsrII	CGGWCCG	1 cut(s)	399
SacI	GAGCTC	2 cut(s)	503, 674
SacII	CCGCGG	2 cut(s)	200, 478
Sau3AI	GATC	3 cut(s)	80, 459, 615
Sau96I	GGNCC	2 cut(s)	399, 409
SchI	GAGTC	3 cut(s)	368, 398, 493
ScrFI	CCNGG	5 cut(s)	41, 228, 266, 346, 355
SduI	GDGCHC	4 cut(s)	24, 288, 503, 674
SfaNI	GCATC	2 cut(s)	345, 568
SfcI	CTRYAG	1 cut(s)	122
Sfr303I	CCGCGG	2 cut(s)	200, 478
SgrBI	CCGCGG	2 cut(s)	200, 478
SinI	GGWCC	2 cut(s)	399, 409
Sse9I	AATT	4 cut(s)	206, 493, 519, 533
SstI	GAGCTC	2 cut(s)	503, 674
StyD4I	CCNGG	5 cut(s)	39, 226, 264, 344, 353
TaaI	ACNGT	3 cut(s)	135, 241, 658
TaiI	ACGT	3 cut(s)	330, 471, 594
TaqI	TCGA	6 cut(s)	276, 339, 497, 537, 594, 633
TasI	AATT	4 cut(s)	206, 493, 519, 533
TauI	GCSGC	7 cut(s)	121, 144, 384, 477, 480, 681, 751
TfiI	GAWTC	1 cut(s)	167
TseFI	GTSAC	2 cut(s)	95, 235
TseI	GCWGC	3 cut(s)	50, 121, 124
Tsp45I	GTSAC	2 cut(s)	95, 235
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	3 cut(s)	83, 376, 728
VpaK11BI	GGWCC	2 cut(s)	399, 409
XapI	RAATTY	2 cut(s)	206, 533
XmiI	GTMKAC	1 cut(s)	653
ZraI	GACGTC	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.