Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013592

Physical Location & Seq

Genomic Coordinates Reverse (-)

77514422 .. 77515173

Gene Structure 752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCATCGCCGGCGATTGTGCTCCTCATCCTCTTCATCCTGGTCGTCGCTGCTTCACTCCTCCTCTACTACCTCCGCCGATCACAACCTGTCCGTCACTCCGCCAACGCCGCCGTGCCGCTGCAGCACTCACAGTCTCGCCGCCGGCAATTCGAGCCGCAGCACCAGCTCCGCCTCCTCCCTCTCTGCCTCCACGCCTTCCACGTGGATTGCATCGACACCTGGCTCGCCGGCGAGTCGCTGATTTGTCCAGTTTGCCGCGCCGTGGTCTTCCGGTCCGACTCGGACCTCCTCCTCCAGACAGCCTCGTCCGCCGGCGGAAGCTTCCGGCTGGCGATCGGCAACGTCAGCAGCGGCCGGCGTCAGGACAATTCGAGGAGCTCGCGAACTCACTCAATTCGCGGAGGTGAATTCGAGTATGTTGTGGATGAGGAATGGGAGCTTCAACTCAGAGACGCGGTTCACGACGTCGAAGGCGAGGACGGCGAGATCGTCGCCGTCGTGATCGACAGCCAACCTCCGCCGCATACGGTGGAGTATCAGAGCTCCTGCGGCATGATTTTCACAGGGAGCAGCCGTCGTTGGACGGAGCTATCCGAGGGACTGGAAACGATTTACCGGTGGCTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

210

Amino Acids

23.55

Weight (kDa)

5.89

Isoelectric Point (pI)

83.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	50 - 87	1.1e-07	Ring finger domain
zf-rbx1	PF12678	62 - 87	5.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15850
rosa_chinensis	RchiOBHm_Chr2g0168321
rosa_laevigata	RLG00000017407 RLG00000021766
rosa_multiflora	Rmu_sc0001170.1_g000006 Rmu_sc0003354.1_g000015 Rmu_sc0006734.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083150
rosa_rugosa	Rorug02G0126700 Rorug02G0532600
rosa_samantha	Rh2AG177400 Rh2BG185400 Rh2BG615200 Rh2CG582900 Rh2DG183500 Rh2DG625400
rosa_wichuraiana	Rw2G013920 Rw2G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AatII	GACGTC	1 cut(s)	471
AccII	CGCG	4 cut(s)	261, 385, 402, 458
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	410
AcvI	CACGTG	1 cut(s)	205
AcyI	GRCGYC	2 cut(s)	361, 468
AfiI	CCNNNNNNNGG	2 cut(s)	265, 364
AgeI	ACCGGT	1 cut(s)	618
AgsI	TTSAA	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	39, 221
AluBI	AGCT	6 cut(s)	169, 324, 381, 442, 546, 592
AluI	AGCT	6 cut(s)	169, 324, 381, 442, 546, 592
Alw21I	GWGCWC	3 cut(s)	24, 383, 548
Alw26I	GTCTC	2 cut(s)	141, 447
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	6 cut(s)	50, 121, 124, 160, 351, 573
ApoI	RAATTY	1 cut(s)	410
AsiGI	ACCGGT	1 cut(s)	618
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	276, 286
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	2 cut(s)	276, 286
BanII	GRGCYC	2 cut(s)	383, 548
BbrPI	CACGTG	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	3 cut(s)	24, 383, 548
BbvI	GCAGC	6 cut(s)	37, 108, 136, 172, 363, 585
BceAI	ACGGC	5 cut(s)	98, 248, 482, 499, 561
BciT130I	CCWGG	2 cut(s)	41, 223
BcoDI	GTCTC	2 cut(s)	141, 447
BfmI	CTRYAG	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	41, 223
Bme18I	GGWCC	2 cut(s)	276, 286
BmgT120I	GGNCC	2 cut(s)	276, 286
BmrFI	CCNGG	2 cut(s)	41, 223
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	205
BsaHI	GRCGYC	2 cut(s)	361, 468
BsaJI	CCNNGG	2 cut(s)	264, 597
BsaWI	WCCGGW	2 cut(s)	273, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 364
Bse118I	RCCGGY	6 cut(s)	10, 144, 230, 314, 357, 618
Bse1I	ACTGG	2 cut(s)	251, 609
BseBI	CCWGG	2 cut(s)	41, 223
BseDI	CCNNGG	2 cut(s)	264, 597
BseGI	GGATG	3 cut(s)	27, 36, 433
BseLI	CCNNNNNNNGG	2 cut(s)	265, 364
BseMII	CTCAG	1 cut(s)	463
BseNI	ACTGG	2 cut(s)	251, 609
BseRI	GAGGAG	7 cut(s)	14, 50, 53, 167, 281, 284, 391
BseX3I	CGGCCG	1 cut(s)	355
BseXI	GCAGC	6 cut(s)	37, 108, 136, 172, 363, 585
Bsh1236I	CGCG	4 cut(s)	261, 385, 402, 458
Bsh1285I	CGRYCG	2 cut(s)	339, 358
BshFI	GGCC	1 cut(s)	357
BshTI	ACCGGT	1 cut(s)	618
BsiEI	CGRYCG	2 cut(s)	339, 358
BsiHKAI	GWGCWC	3 cut(s)	24, 383, 548
BsiSI	CCGG	8 cut(s)	11, 145, 231, 274, 315, 328, 358, 619
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	2 cut(s)	265, 364
BsmAI	GTCTC	2 cut(s)	141, 447
BsmBI	CGTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	3 cut(s)	24, 383, 548
Bsp143I	GATC	4 cut(s)	80, 336, 489, 504
Bsp68I	TCGCGA	1 cut(s)	385
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	462
BspFNI	CGCG	4 cut(s)	261, 385, 402, 458
BspMAI	CTGCAG	1 cut(s)	126
BsrFI	RCCGGY	6 cut(s)	10, 144, 230, 314, 357, 618
BsrI	ACTGG	2 cut(s)	251, 609
BssAI	RCCGGY	6 cut(s)	10, 144, 230, 314, 357, 618
BssECI	CCNNGG	2 cut(s)	264, 597
BssMI	GATC	4 cut(s)	80, 336, 489, 504
BssNI	GRCGYC	2 cut(s)	361, 468
Bst2UI	CCWGG	2 cut(s)	41, 223
Bst4CI	ACNGT	2 cut(s)	135, 532
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	2 cut(s)	361, 468
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	8 cut(s)	12, 146, 228, 232, 316, 333, 359, 383
BstDEI	CTNAG	1 cut(s)	449
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	3 cut(s)	27, 36, 433
BstFNI	CGCG	4 cut(s)	261, 385, 402, 458
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	4 cut(s)	83, 339, 492, 507
BstMAI	GTCTC	2 cut(s)	141, 447
BstMBI	GATC	4 cut(s)	80, 336, 489, 504
BstMCI	CGRYCG	2 cut(s)	339, 358
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 124, 154, 166, 311, 348, 483, 552
BstNI	CCWGG	2 cut(s)	41, 223
BstSCI	CCNGG	2 cut(s)	39, 221
BstSFI	CTRYAG	1 cut(s)	122
BstUI	CGCG	4 cut(s)	261, 385, 402, 458
BstV1I	GCAGC	6 cut(s)	37, 108, 136, 172, 363, 585
BstV2I	GAAGAC	1 cut(s)	262
BstZI	CGGCCG	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	27, 36, 433
BtuMI	TCGCGA	1 cut(s)	385
Cac8I	GCNNGC	8 cut(s)	12, 146, 228, 232, 316, 333, 359, 383
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	6 cut(s)	10, 144, 230, 314, 357, 618
Cfr13I	GGNCC	2 cut(s)	276, 286
CpoI	CGGWCCG	1 cut(s)	276
CseI	GACGC	2 cut(s)	350, 464
CspAI	ACCGGT	1 cut(s)	618
CspCI	CAANNNNNGTGG	2 cut(s)	191, 226
CspI	CGGWCCG	1 cut(s)	276
CviAII	CATG	1 cut(s)	556
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	4 cut(s)	82, 338, 491, 506
DpnII	GATC	4 cut(s)	80, 336, 489, 504
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	355
EagI	CGGCCG	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	6 cut(s)	65, 91, 161, 301, 333, 510
Ecl136II	GAGCTC	2 cut(s)	381, 546
EclXI	CGGCCG	1 cut(s)	355
Eco24I	GRGCYC	2 cut(s)	383, 548
Eco47I	GGWCC	2 cut(s)	276, 286
Eco52I	CGGCCG	1 cut(s)	355
Eco53kI	GAGCTC	2 cut(s)	381, 546
Eco72I	CACGTG	1 cut(s)	205
EcoICRI	GAGCTC	2 cut(s)	381, 546
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	39, 221
EcoT38I	GRGCYC	2 cut(s)	383, 548
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	1 cut(s)	559
FaiI	YATR	3 cut(s)	420, 528, 557
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	1 cut(s)	555
FokI	GGATG	3 cut(s)	14, 23, 440
FriOI	GRGCYC	2 cut(s)	383, 548
GlaI	GCGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	8 cut(s)	11, 145, 231, 274, 315, 328, 358, 619
HgaI	GACGC	2 cut(s)	350, 464
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	2 cut(s)	361, 468
Hin1II	CATG	1 cut(s)	559
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	2 cut(s)	236, 281
HpaII	CCGG	8 cut(s)	11, 145, 231, 274, 315, 328, 358, 619
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	5 cut(s)	280, 286, 452, 543, 598
Hpy188III	TCNNGA	6 cut(s)	298, 365, 384, 464, 502, 630
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	6 cut(s)	50, 470, 473, 497, 503, 582
HpyAV	CCTTC	2 cut(s)	208, 467
HpyCH4III	ACNGT	2 cut(s)	135, 532
HpyCH4IV	ACGT	3 cut(s)	204, 345, 468
HpyCH4V	TGCA	2 cut(s)	124, 213
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 124, 154, 166, 311, 348, 483, 552
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	3 cut(s)	204, 345, 468
Hsp92I	GRCGYC	2 cut(s)	361, 468
Hsp92II	CATG	1 cut(s)	559
HspAI	GCGC	1 cut(s)	261
KroI	GCCGGC	5 cut(s)	10, 144, 230, 314, 357
KroNI	GCCGGC	5 cut(s)	12, 146, 232, 316, 359
Kzo9I	GATC	4 cut(s)	80, 336, 489, 504
LmnI	GCTCC	7 cut(s)	27, 174, 378, 439, 551, 570, 589
Lsp1109I	GCAGC	6 cut(s)	37, 108, 136, 172, 363, 585
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	3 cut(s)	204, 345, 468
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	4 cut(s)	82, 338, 491, 506
MboI	GATC	4 cut(s)	80, 336, 489, 504
MboII	GAAGA	2 cut(s)	25, 262
MhlI	GDGCHC	3 cut(s)	24, 383, 548
MluCI	AATT	4 cut(s)	149, 370, 396, 410
MlyI	GAGTC	2 cut(s)	245, 275
MmeI	TCCRAC	2 cut(s)	303, 563
MreI	CGCCGGCG	3 cut(s)	10, 230, 314
MroNI	GCCGGC	5 cut(s)	10, 144, 230, 314, 357
MspA1I	CMGCKG	2 cut(s)	121, 354
MspI	CCGG	8 cut(s)	11, 145, 231, 274, 315, 328, 358, 619
MspR9I	CCNGG	2 cut(s)	41, 223
MvaI	CCWGG	2 cut(s)	41, 223
MvnI	CGCG	4 cut(s)	261, 385, 402, 458
MwoI	GCNNNNNNNGC	8 cut(s)	110, 124, 154, 166, 311, 348, 483, 552
NaeI	GCCGGC	5 cut(s)	12, 146, 232, 316, 359
NdeII	GATC	4 cut(s)	80, 336, 489, 504
NgoMIV	GCCGGC	5 cut(s)	10, 144, 230, 314, 357
NlaIII	CATG	1 cut(s)	559
NmuCI	GTSAC	1 cut(s)	95
NruI	TCGCGA	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	5 cut(s)	201, 462, 474, 489, 498
PdiI	GCCGGC	5 cut(s)	12, 146, 232, 316, 359
PinAI	ACCGGT	1 cut(s)	618
Ple19I	CGATCG	1 cut(s)	339
PleI	GAGTC	2 cut(s)	244, 275
PmaCI	CACGTG	1 cut(s)	205
PmlI	CACGTG	1 cut(s)	205
PpsI	GAGTC	2 cut(s)	244, 275
Ppu21I	YACGTR	1 cut(s)	205
Psp124BI	GAGCTC	2 cut(s)	383, 548
Psp6I	CCWGG	2 cut(s)	39, 221
PspCI	CACGTG	1 cut(s)	205
PspGI	CCWGG	2 cut(s)	39, 221
PspPI	GGNCC	2 cut(s)	276, 286
PstI	CTGCAG	1 cut(s)	126
PvuI	CGATCG	1 cut(s)	339
RruI	TCGCGA	1 cut(s)	385
Rsr2I	CGGWCCG	1 cut(s)	276
RsrII	CGGWCCG	1 cut(s)	276
SacI	GAGCTC	2 cut(s)	383, 548
Sau3AI	GATC	4 cut(s)	80, 336, 489, 504
Sau96I	GGNCC	2 cut(s)	276, 286
SchI	GAGTC	2 cut(s)	245, 275
ScrFI	CCNGG	2 cut(s)	41, 223
SduI	GDGCHC	3 cut(s)	24, 383, 548
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	122
SgrAI	CRCCGGYG	3 cut(s)	10, 230, 314
SinI	GGWCC	2 cut(s)	276, 286
Sse9I	AATT	4 cut(s)	149, 370, 396, 410
SstI	GAGCTC	2 cut(s)	383, 548
StyD4I	CCNGG	2 cut(s)	39, 221
TaaI	ACNGT	2 cut(s)	135, 532
TaiI	ACGT	3 cut(s)	207, 348, 471
TaqI	TCGA	6 cut(s)	153, 216, 374, 414, 471, 507
TasI	AATT	4 cut(s)	149, 370, 396, 410
TauI	GCSGC	8 cut(s)	113, 121, 144, 160, 261, 357, 526, 555
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	6 cut(s)	50, 121, 124, 160, 351, 573
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	2 cut(s)	83, 602
VpaK11BI	GGWCC	2 cut(s)	276, 286
XapI	RAATTY	1 cut(s)	410
ZraI	GACGTC	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.