Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013592

Physical Location & Seq

Genomic Coordinates Reverse (-)

78038968 .. 78040492

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCGTCGCCGGCGATTGTGCTCCTCATCCTCTTCATGCTGGTCGTCGCTGCTTCACTCTTCCTCTACTACCTCCGCCGATCACAACCTGTCCGTCACTCCGCCAACGCCGCCGTGCCGCTGCAGCACTCACAGTCTCGCCGCCGGCAGGTCTCTCCTGCTCCTTCCTCCTCCGGCCTCCTCCTCCTCCCGCGGTTCAAATTCTCCGACCTGAAACGCCCTGGCTCCGTCACCGTCGGCGGAGACTGCGCGATTTGCCTGGCGGAGTTCGAGCCGGAGCACCAGCTCCGCCTCCTCCCTCTCTGCCTCCACGCCTTCCACGTGGATTGCATCGACACCTGGCTCGCTGGCGAGTCGCTGATTTGTCCAGTTTGCCGCGCCGAGGTCTTCCGGTCCGACTCGGACCTCCTCCTCCAGACAGCCTCCTCCGCCGGCGGAAGCTTCCGGCTGGAGATCGGCAACGTCAGCCGCGGCCGGCGTCAGAATTCGAGCGTTCGAACTCACTCAATTCGCGGAGGTGAATTCGAGTATGTTGTGGATGAGGAATGGGAGCTTCAACTCAGAGATGCGGTTCACGACGTCGAAGGCGAGGACGACGAGATCGTCGCCGTCGTTATCGACAGCCAACCTCCGCCGCCGTATACGGTGGAGTATCAGAGCTCCTGCGGCATGATTTTCACAGGGAGTAGCCGTCGTTGGACGGAGCTATCCGAGGGACTGGAAATGATTTCCCGATTCCTCGAAGAAGAAATTAGGATTTACATTGATGGGAACTCATTTCATTTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

264

Amino Acids

29.38

Weight (kDa)

5.29

Isoelectric Point (pI)

74.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	82 - 126	7.1e-12	Ring finger domain
zf-RING_11	PF17123	82 - 111	1.3e-09	RING-like zinc finger
zf-C3HC4	PF00097	83 - 125	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	99 - 126	8.7e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15850
rosa_chinensis	RchiOBHm_Chr2g0168321
rosa_laevigata	RLG00000017407 RLG00000021766
rosa_multiflora	Rmu_sc0001170.1_g000006 Rmu_sc0003354.1_g000015 Rmu_sc0006734.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083150
rosa_rugosa	Rorug02G0126700 Rorug02G0532600
rosa_samantha	Rh2AG177400 Rh2BG185400 Rh2BG615200 Rh2CG582900 Rh2DG183500 Rh2DG625400
rosa_wichuraiana	Rw2G013920 Rw2G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	602
AatII	GACGTC	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	641
AccII	CGCG	5 cut(s)	193, 251, 378, 471, 513
AcoI	YGGCCR	1 cut(s)	472
AcsI	RAATTY	3 cut(s)	200, 484, 521
AcvI	CACGTG	1 cut(s)	322
AcyI	GRCGYC	2 cut(s)	478, 579
AfiI	CCNNNNNNNGG	2 cut(s)	148, 382
AgsI	TTSAA	2 cut(s)	199, 557
AjnI	CCWGG	3 cut(s)	220, 258, 338
AluBI	AGCT	5 cut(s)	286, 441, 553, 660, 706
AluI	AGCT	5 cut(s)	286, 441, 553, 660, 706
Alw21I	GWGCWC	3 cut(s)	24, 282, 662
Alw26I	GTCTC	3 cut(s)	141, 157, 237
AoxI	GGCC	2 cut(s)	175, 472
ApeKI	GCWGC	3 cut(s)	50, 121, 124
ApoI	RAATTY	3 cut(s)	200, 484, 521
AspLEI	GCGC	2 cut(s)	251, 380
AspS9I	GGNCC	2 cut(s)	393, 403
AsuHPI	GGTGA	2 cut(s)	223, 530
AsuII	TTCGAA	1 cut(s)	496
AvaII	GGWCC	2 cut(s)	393, 403
BanII	GRGCYC	1 cut(s)	662
BbrPI	CACGTG	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	3 cut(s)	24, 282, 662
BbvI	GCAGC	3 cut(s)	37, 108, 136
BccI	CCATC	1 cut(s)	761
BceAI	ACGGC	4 cut(s)	98, 593, 622, 675
BciT130I	CCWGG	3 cut(s)	222, 260, 340
BcoDI	GTCTC	3 cut(s)	141, 157, 237
BfmI	CTRYAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	139
Bme1390I	CCNGG	3 cut(s)	222, 260, 340
Bme18I	GGWCC	2 cut(s)	393, 403
BmgT120I	GGNCC	2 cut(s)	393, 403
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	3 cut(s)	222, 260, 340
BmsI	GCATC	2 cut(s)	339, 556
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	2 cut(s)	398, 470
Bpu14I	TTCGAA	1 cut(s)	496
BsaAI	YACGTR	1 cut(s)	322
BsaHI	GRCGYC	2 cut(s)	478, 579
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	5 cut(s)	191, 220, 381, 469, 711
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	676, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 382
Bse118I	RCCGGY	4 cut(s)	10, 144, 431, 474
Bse1I	ACTGG	2 cut(s)	368, 723
BseBI	CCWGG	3 cut(s)	222, 260, 340
BseDI	CCNNGG	5 cut(s)	191, 220, 381, 469, 711
BseGI	GGATG	2 cut(s)	27, 544
BseLI	CCNNNNNNNGG	2 cut(s)	148, 382
BseMII	CTCAG	1 cut(s)	574
BseNI	ACTGG	2 cut(s)	368, 723
BseRI	GAGGAG	9 cut(s)	14, 160, 170, 173, 176, 284, 398, 401, 415
BseX3I	CGGCCG	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	37, 108, 136
Bsh1236I	CGCG	5 cut(s)	193, 251, 378, 471, 513
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	2 cut(s)	177, 474
BsiEI	CGRYCG	1 cut(s)	475
BsiHKAI	GWGCWC	3 cut(s)	24, 282, 662
BsiSI	CCGG	8 cut(s)	11, 145, 174, 275, 391, 432, 445, 475
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	148, 382
BsmAI	GTCTC	3 cut(s)	141, 157, 237
BsmFI	GGGAC	1 cut(s)	729
BsnI	GGCC	2 cut(s)	177, 474
Bso31I	GGTCTC	1 cut(s)	157
Bsp119I	TTCGAA	1 cut(s)	496
Bsp1286I	GDGCHC	3 cut(s)	24, 282, 662
Bsp143I	GATC	3 cut(s)	80, 453, 600
BspANI	GGCC	2 cut(s)	177, 474
BspCNI	CTCAG	1 cut(s)	573
BspFNI	CGCG	5 cut(s)	193, 251, 378, 471, 513
BspLI	GGNNCC	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	139
BspT104I	TTCGAA	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	157
BsrFI	RCCGGY	4 cut(s)	10, 144, 431, 474
BsrI	ACTGG	2 cut(s)	368, 723
BssAI	RCCGGY	4 cut(s)	10, 144, 431, 474
BssECI	CCNNGG	5 cut(s)	191, 220, 381, 469, 711
BssMI	GATC	3 cut(s)	80, 453, 600
BssNAI	GTATAC	1 cut(s)	642
BssNI	GRCGYC	2 cut(s)	478, 579
Bst1107I	GTATAC	1 cut(s)	642
Bst2UI	CCWGG	3 cut(s)	222, 260, 340
Bst4CI	ACNGT	3 cut(s)	135, 235, 646
Bst6I	CTCTTC	2 cut(s)	38, 65
BstACI	GRCGYC	2 cut(s)	478, 579
BstBAI	YACGTR	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	496
BstC8I	GCNNGC	6 cut(s)	12, 146, 345, 349, 433, 476
BstDEI	CTNAG	1 cut(s)	560
BstDSI	CCRYGG	2 cut(s)	191, 469
BstF5I	GGATG	2 cut(s)	27, 544
BstFNI	CGCG	5 cut(s)	193, 251, 378, 471, 513
BstHHI	GCGC	2 cut(s)	251, 380
BstKTI	GATC	3 cut(s)	83, 456, 603
BstMAI	GTCTC	3 cut(s)	141, 157, 237
BstMBI	GATC	3 cut(s)	80, 453, 600
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 124, 246, 255, 428, 465, 666
BstNI	CCWGG	3 cut(s)	222, 260, 340
BstSCI	CCNGG	3 cut(s)	220, 258, 338
BstSFI	CTRYAG	1 cut(s)	122
BstUI	CGCG	5 cut(s)	193, 251, 378, 471, 513
BstV1I	GCAGC	3 cut(s)	37, 108, 136
BstV2I	GAAGAC	1 cut(s)	379
BstZ17I	GTATAC	1 cut(s)	642
BstZI	CGGCCG	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	177, 474
BtgI	CCRYGG	2 cut(s)	191, 469
BtsCI	GGATG	2 cut(s)	27, 544
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	6 cut(s)	12, 146, 345, 349, 433, 476
CfoI	GCGC	2 cut(s)	251, 380
Cfr10I	RCCGGY	4 cut(s)	10, 144, 431, 474
Cfr13I	GGNCC	2 cut(s)	393, 403
Cfr42I	CCGCGG	2 cut(s)	194, 472
CpoI	CGGWCCG	1 cut(s)	393
CseI	GACGC	1 cut(s)	467
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CspI	CGGWCCG	1 cut(s)	393
CviAII	CATG	2 cut(s)	37, 670
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	3 cut(s)	82, 455, 602
DpnII	GATC	3 cut(s)	80, 453, 600
DrdI	GACNNNNNNGTC	1 cut(s)	602
DseDI	GACNNNNNNGTC	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	472
EagI	CGGCCG	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	38, 65
EarI	CTCTTC	2 cut(s)	38, 65
EciI	GGCGGA	8 cut(s)	65, 91, 255, 278, 278, 418, 450, 621
Ecl136II	GAGCTC	1 cut(s)	660
EclXI	CGGCCG	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	662
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	393, 403
Eco52I	CGGCCG	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	660
Eco72I	CACGTG	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	660
EcoRI	GAATTC	2 cut(s)	484, 521
EcoRII	CCWGG	3 cut(s)	220, 258, 338
EcoT38I	GRGCYC	1 cut(s)	662
FaeI	CATG	2 cut(s)	40, 673
FaiI	YATR	4 cut(s)	38, 531, 642, 671
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	2 cut(s)	36, 669
FauI	CCCGC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	641
FokI	GGATG	2 cut(s)	14, 551
FriOI	GRGCYC	1 cut(s)	662
GlaI	GCGC	2 cut(s)	250, 379
GsuI	CTGGAG	2 cut(s)	398, 470
HaeIII	GGCC	2 cut(s)	177, 474
HapII	CCGG	8 cut(s)	11, 145, 174, 275, 391, 432, 445, 475
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	2 cut(s)	251, 380
Hin1I	GRCGYC	2 cut(s)	478, 579
Hin1II	CATG	2 cut(s)	40, 673
Hin6I	GCGC	2 cut(s)	249, 378
HinP1I	GCGC	2 cut(s)	249, 378
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	3 cut(s)	353, 398, 735
HpaII	CCGG	8 cut(s)	11, 145, 174, 275, 391, 432, 445, 475
HphI	GGTGA	2 cut(s)	223, 530
Hpy166II	GTNNAC	2 cut(s)	574, 642
Hpy188I	TCNGA	7 cut(s)	208, 397, 403, 483, 563, 657, 712
Hpy188III	TCNNGA	3 cut(s)	415, 575, 732
Hpy8I	GTNNAC	2 cut(s)	574, 642
Hpy99I	CGWCG	9 cut(s)	10, 50, 239, 581, 584, 599, 608, 614, 696
HpyAV	CCTTC	3 cut(s)	174, 325, 578
HpyCH4III	ACNGT	3 cut(s)	135, 235, 646
HpyCH4IV	ACGT	3 cut(s)	321, 462, 579
HpyCH4V	TGCA	2 cut(s)	124, 330
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 124, 246, 255, 428, 465, 666
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	3 cut(s)	321, 462, 579
Hsp92I	GRCGYC	2 cut(s)	478, 579
Hsp92II	CATG	2 cut(s)	40, 673
HspAI	GCGC	2 cut(s)	249, 378
KroI	GCCGGC	4 cut(s)	10, 144, 431, 474
KroNI	GCCGGC	4 cut(s)	12, 146, 433, 476
KspI	CCGCGG	2 cut(s)	194, 472
Kzo9I	GATC	3 cut(s)	80, 453, 600
LmnI	GCTCC	8 cut(s)	27, 166, 230, 277, 291, 550, 665, 703
Lsp1109I	GCAGC	3 cut(s)	37, 108, 136
LweI	GCATC	2 cut(s)	339, 556
MaeII	ACGT	3 cut(s)	321, 462, 579
MaeIII	GTNAC	2 cut(s)	95, 229
MalI	GATC	3 cut(s)	82, 455, 602
MboI	GATC	3 cut(s)	80, 453, 600
MboII	GAAGA	5 cut(s)	25, 52, 379, 755, 758
MhlI	GDGCHC	3 cut(s)	24, 282, 662
MluCI	AATT	5 cut(s)	200, 484, 507, 521, 750
MlyI	GAGTC	2 cut(s)	362, 392
MmeI	TCCRAC	3 cut(s)	231, 420, 677
MreI	CGCCGGCG	2 cut(s)	10, 431
MroNI	GCCGGC	4 cut(s)	10, 144, 431, 474
MspA1I	CMGCKG	3 cut(s)	121, 193, 471
MspI	CCGG	8 cut(s)	11, 145, 174, 275, 391, 432, 445, 475
MspR9I	CCNGG	3 cut(s)	222, 260, 340
MvaI	CCWGG	3 cut(s)	222, 260, 340
MvnI	CGCG	5 cut(s)	193, 251, 378, 471, 513
MwoI	GCNNNNNNNGC	7 cut(s)	110, 124, 246, 255, 428, 465, 666
NaeI	GCCGGC	4 cut(s)	12, 146, 433, 476
NdeII	GATC	3 cut(s)	80, 453, 600
NgoMIV	GCCGGC	4 cut(s)	10, 144, 431, 474
NlaIII	CATG	2 cut(s)	40, 673
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	95, 229
NspV	TTCGAA	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	5 cut(s)	11, 318, 585, 600, 609
PdiI	GCCGGC	4 cut(s)	12, 146, 433, 476
PfeI	GAWTC	1 cut(s)	735
PleI	GAGTC	2 cut(s)	361, 392
PmaCI	CACGTG	1 cut(s)	322
PmlI	CACGTG	1 cut(s)	322
PpsI	GAGTC	2 cut(s)	361, 392
Ppu21I	YACGTR	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	662
Psp6I	CCWGG	3 cut(s)	220, 258, 338
PspCI	CACGTG	1 cut(s)	322
PspGI	CCWGG	3 cut(s)	220, 258, 338
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	393, 403
PstI	CTGCAG	1 cut(s)	126
Rsr2I	CGGWCCG	1 cut(s)	393
RsrII	CGGWCCG	1 cut(s)	393
SacI	GAGCTC	1 cut(s)	662
SacII	CCGCGG	2 cut(s)	194, 472
Sau3AI	GATC	3 cut(s)	80, 453, 600
Sau96I	GGNCC	2 cut(s)	393, 403
SchI	GAGTC	2 cut(s)	362, 392
ScrFI	CCNGG	3 cut(s)	222, 260, 340
SduI	GDGCHC	3 cut(s)	24, 282, 662
SfaNI	GCATC	2 cut(s)	339, 556
SfcI	CTRYAG	1 cut(s)	122
Sfr303I	CCGCGG	2 cut(s)	194, 472
SfuI	TTCGAA	1 cut(s)	496
SgrAI	CRCCGGYG	2 cut(s)	10, 431
SgrBI	CCGCGG	2 cut(s)	194, 472
SinI	GGWCC	2 cut(s)	393, 403
Sse9I	AATT	5 cut(s)	200, 484, 507, 521, 750
SstI	GAGCTC	1 cut(s)	662
StyD4I	CCNGG	3 cut(s)	220, 258, 338
TaaI	ACNGT	3 cut(s)	135, 235, 646
TaiI	ACGT	3 cut(s)	324, 465, 582
TaqI	TCGA	8 cut(s)	270, 333, 488, 496, 525, 582, 618, 741
TasI	AATT	5 cut(s)	200, 484, 507, 521, 750
TauI	GCSGC	8 cut(s)	113, 121, 144, 378, 471, 474, 637, 669
TfiI	GAWTC	1 cut(s)	735
TseFI	GTSAC	2 cut(s)	95, 229
TseI	GCWGC	3 cut(s)	50, 121, 124
Tsp45I	GTSAC	2 cut(s)	95, 229
TspDTI	ATGAA	2 cut(s)	25, 770
TspGWI	ACGGA	3 cut(s)	83, 217, 716
VpaK11BI	GGWCC	2 cut(s)	393, 403
XapI	RAATTY	3 cut(s)	200, 484, 521
XmiI	GTMKAC	1 cut(s)	641
ZraI	GACGTC	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.