Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013592

Physical Location & Seq

Genomic Coordinates Reverse (-)

83772122 .. 83773115

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG615200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCATCGCCGGCGATTGTGCTCCTCATCCTCTTCATCCTGGTCGTCGCTGCTTCACTCCTCCTCTACTACCTCCGCCGATCACAACCTGTCCGTCACTCCGCCAACGCCCCCGTGCCGCTGCAGCACTCACAGTCTCGCCGCCGGCAAGTCTCTCCTGCACCTTCCTCCTCCGGCCTCCTCCTCCTCCTCCCGCGGTTCAAATTCTCCGACCTGAAACGCCCTGGCTCCGTCACCGTCGGCGGAGACTGCGCGATTTGCCTGGCGGAGTTCGAGCCGCAGCACCAGCTCCGCCTCCTCCCTCTCTGCCTCCATGCCTTCCACGTAGATTGCATCGACACCTGGCTCGCCGGCGAGTCGCTGATTTGTCCAGTTTGCCGCGCCGTGGTCTTCCGGTCCGACTCGGACCTCCTCCTCCAGACAGCCTCCTCCGCCGGCGGAAGCTTCCGGCTGGCGATCGGCAACGTCAGCAGCGGCCGGCGTCAGGACAATTCGAGGAGCTCGCGAACTCACTCAATTCGCGGAGGTGAATTCGAGTATGTTGTGGATGAGGAATGGGAGCTTCAACTCAGAGATGCGATTCACGACGTCGAAGGCGAGGACGGCGAGATCGTCGCCGTCGTTATCGACAGCCAACCTCCGCCGTCTACGGTGGAGTATCAAAGCTCCTGCGGCATGATTTTCACAGGGAGCAGCCGTCGTTGGACGGAGCTATCCGAGGGACTGGAAACGATTTACCGGTGGCTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

250

Amino Acids

27.62

Weight (kDa)

5.98

Isoelectric Point (pI)

82.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	83 - 127	9e-12	Ring finger domain
zf-RING_11	PF17123	83 - 112	1.6e-09	RING-like zinc finger
zf-C3HC4	PF00097	84 - 126	1.5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15850
rosa_chinensis	RchiOBHm_Chr2g0168321
rosa_laevigata	RLG00000017407 RLG00000021766
rosa_multiflora	Rmu_sc0001170.1_g000006 Rmu_sc0003354.1_g000015 Rmu_sc0006734.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083150
rosa_rugosa	Rorug02G0126700 Rorug02G0532600
rosa_samantha	Rh2AG177400 Rh2BG185400 Rh2BG615200 Rh2CG582900 Rh2DG183500 Rh2DG625400
rosa_wichuraiana	Rw2G013920 Rw2G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	647
AccII	CGCG	5 cut(s)	196, 254, 381, 505, 522
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	2 cut(s)	203, 530
AcyI	GRCGYC	2 cut(s)	481, 588
AfiI	CCNNNNNNNGG	2 cut(s)	385, 484
AgeI	ACCGGT	1 cut(s)	738
AgsI	TTSAA	2 cut(s)	202, 566
AjnI	CCWGG	4 cut(s)	39, 223, 261, 341
AluBI	AGCT	6 cut(s)	289, 444, 501, 562, 666, 712
AluI	AGCT	6 cut(s)	289, 444, 501, 562, 666, 712
Alw21I	GWGCWC	2 cut(s)	24, 503
Alw26I	GTCTC	3 cut(s)	141, 157, 240
AoxI	GGCC	2 cut(s)	175, 475
ApeKI	GCWGC	6 cut(s)	50, 121, 124, 280, 471, 693
ApoI	RAATTY	2 cut(s)	203, 530
AsiGI	ACCGGT	1 cut(s)	738
AspLEI	GCGC	2 cut(s)	254, 383
AspS9I	GGNCC	2 cut(s)	396, 406
AsuHPI	GGTGA	2 cut(s)	226, 539
AvaII	GGWCC	2 cut(s)	396, 406
BanII	GRGCYC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	24, 503
BbvI	GCAGC	6 cut(s)	37, 108, 136, 292, 483, 705
BceAI	ACGGC	5 cut(s)	368, 602, 619, 628, 681
BciT130I	CCWGG	4 cut(s)	41, 225, 263, 343
BcoDI	GTCTC	3 cut(s)	141, 157, 240
BfmI	CTRYAG	1 cut(s)	122
Bme1390I	CCNGG	4 cut(s)	41, 225, 263, 343
Bme18I	GGWCC	2 cut(s)	396, 406
BmgT120I	GGNCC	2 cut(s)	396, 406
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	4 cut(s)	41, 225, 263, 343
BmsI	GCATC	2 cut(s)	342, 565
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	325
BsaHI	GRCGYC	2 cut(s)	481, 588
BsaJI	CCNNGG	4 cut(s)	194, 223, 384, 717
BsaWI	WCCGGW	2 cut(s)	393, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 484
Bse118I	RCCGGY	6 cut(s)	10, 144, 350, 434, 477, 738
Bse1I	ACTGG	2 cut(s)	371, 729
BseBI	CCWGG	4 cut(s)	41, 225, 263, 343
BseDI	CCNNGG	4 cut(s)	194, 223, 384, 717
BseGI	GGATG	3 cut(s)	27, 36, 553
BseLI	CCNNNNNNNGG	2 cut(s)	385, 484
BseMII	CTCAG	1 cut(s)	583
BseNI	ACTGG	2 cut(s)	371, 729
BseX3I	CGGCCG	1 cut(s)	475
BseXI	GCAGC	6 cut(s)	37, 108, 136, 292, 483, 705
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	5 cut(s)	196, 254, 381, 505, 522
Bsh1285I	CGRYCG	2 cut(s)	459, 478
BshFI	GGCC	2 cut(s)	177, 477
BshTI	ACCGGT	1 cut(s)	738
BsiEI	CGRYCG	2 cut(s)	459, 478
BsiHKAI	GWGCWC	2 cut(s)	24, 503
BsiSI	CCGG	9 cut(s)	11, 145, 174, 351, 394, 435, 448, 478, 739
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	2 cut(s)	385, 484
BsmAI	GTCTC	3 cut(s)	141, 157, 240
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	177, 477
Bsp1286I	GDGCHC	2 cut(s)	24, 503
Bsp143I	GATC	3 cut(s)	80, 456, 609
Bsp68I	TCGCGA	1 cut(s)	505
BspANI	GGCC	2 cut(s)	177, 477
BspCNI	CTCAG	1 cut(s)	582
BspFNI	CGCG	5 cut(s)	196, 254, 381, 505, 522
BspLI	GGNNCC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	126
BsrFI	RCCGGY	6 cut(s)	10, 144, 350, 434, 477, 738
BsrI	ACTGG	2 cut(s)	371, 729
BssAI	RCCGGY	6 cut(s)	10, 144, 350, 434, 477, 738
BssECI	CCNNGG	4 cut(s)	194, 223, 384, 717
BssMI	GATC	3 cut(s)	80, 456, 609
BssNI	GRCGYC	2 cut(s)	481, 588
Bst2UI	CCWGG	4 cut(s)	41, 225, 263, 343
Bst4CI	ACNGT	3 cut(s)	135, 238, 652
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	2 cut(s)	481, 588
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	8 cut(s)	12, 146, 348, 352, 436, 453, 479, 503
BstDEI	CTNAG	1 cut(s)	569
BstDSI	CCRYGG	2 cut(s)	194, 384
BstF5I	GGATG	3 cut(s)	27, 36, 553
BstFNI	CGCG	5 cut(s)	196, 254, 381, 505, 522
BstHHI	GCGC	2 cut(s)	254, 383
BstKTI	GATC	3 cut(s)	83, 459, 612
BstMAI	GTCTC	3 cut(s)	141, 157, 240
BstMBI	GATC	3 cut(s)	80, 456, 609
BstMCI	CGRYCG	2 cut(s)	459, 478
BstMWI	GCNNNNNNNGC	8 cut(s)	124, 249, 258, 286, 431, 468, 603, 672
BstNI	CCWGG	4 cut(s)	41, 225, 263, 343
BstSCI	CCNGG	4 cut(s)	39, 223, 261, 341
BstSFI	CTRYAG	1 cut(s)	122
BstUI	CGCG	5 cut(s)	196, 254, 381, 505, 522
BstV1I	GCAGC	6 cut(s)	37, 108, 136, 292, 483, 705
BstV2I	GAAGAC	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	177, 477
BtgI	CCRYGG	2 cut(s)	194, 384
BtsCI	GGATG	3 cut(s)	27, 36, 553
BtuMI	TCGCGA	1 cut(s)	505
Cac8I	GCNNGC	8 cut(s)	12, 146, 348, 352, 436, 453, 479, 503
CfoI	GCGC	2 cut(s)	254, 383
Cfr10I	RCCGGY	6 cut(s)	10, 144, 350, 434, 477, 738
Cfr13I	GGNCC	2 cut(s)	396, 406
Cfr42I	CCGCGG	1 cut(s)	197
CpoI	CGGWCCG	1 cut(s)	396
CseI	GACGC	1 cut(s)	470
CspAI	ACCGGT	1 cut(s)	738
CspCI	CAANNNNNGTGG	2 cut(s)	311, 346
CspI	CGGWCCG	1 cut(s)	396
CviAII	CATG	2 cut(s)	314, 676
DdeI	CTNAG	1 cut(s)	569
DpnI	GATC	3 cut(s)	82, 458, 611
DpnII	GATC	3 cut(s)	80, 456, 609
EaeI	YGGCCR	1 cut(s)	475
EagI	CGGCCG	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	8 cut(s)	65, 91, 258, 281, 281, 421, 453, 630
Ecl136II	GAGCTC	1 cut(s)	501
EclXI	CGGCCG	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	503
Eco47I	GGWCC	2 cut(s)	396, 406
Eco52I	CGGCCG	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	501
EcoICRI	GAGCTC	1 cut(s)	501
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	4 cut(s)	39, 223, 261, 341
EcoT38I	GRGCYC	1 cut(s)	503
FaeI	CATG	2 cut(s)	317, 679
FaiI	YATR	3 cut(s)	315, 540, 677
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	2 cut(s)	313, 675
FauI	CCCGC	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	647
FokI	GGATG	3 cut(s)	14, 23, 560
FriOI	GRGCYC	1 cut(s)	503
GlaI	GCGC	2 cut(s)	253, 382
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	177, 477
HapII	CCGG	9 cut(s)	11, 145, 174, 351, 394, 435, 448, 478, 739
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	2 cut(s)	254, 383
Hin1I	GRCGYC	2 cut(s)	481, 588
Hin1II	CATG	2 cut(s)	317, 679
Hin6I	GCGC	2 cut(s)	252, 381
HinP1I	GCGC	2 cut(s)	252, 381
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	3 cut(s)	356, 401, 580
HpaII	CCGG	9 cut(s)	11, 145, 174, 351, 394, 435, 448, 478, 739
HphI	GGTGA	2 cut(s)	226, 539
Hpy166II	GTNNAC	1 cut(s)	648
Hpy188I	TCNGA	5 cut(s)	211, 400, 406, 572, 718
Hpy188III	TCNNGA	5 cut(s)	418, 485, 504, 584, 750
Hpy8I	GTNNAC	1 cut(s)	648
Hpy99I	CGWCG	7 cut(s)	50, 242, 590, 593, 617, 623, 702
HpyAV	CCTTC	3 cut(s)	174, 328, 587
HpyCH4III	ACNGT	3 cut(s)	135, 238, 652
HpyCH4IV	ACGT	3 cut(s)	324, 465, 588
HpyCH4V	TGCA	3 cut(s)	124, 161, 333
HpyF10VI	GCNNNNNNNGC	8 cut(s)	124, 249, 258, 286, 431, 468, 603, 672
HpyF3I	CTNAG	1 cut(s)	569
HpySE526I	ACGT	3 cut(s)	324, 465, 588
Hsp92I	GRCGYC	2 cut(s)	481, 588
Hsp92II	CATG	2 cut(s)	317, 679
HspAI	GCGC	2 cut(s)	252, 381
KroI	GCCGGC	5 cut(s)	10, 144, 350, 434, 477
KroNI	GCCGGC	5 cut(s)	12, 146, 352, 436, 479
KspI	CCGCGG	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	80, 456, 609
LmnI	GCTCC	8 cut(s)	27, 233, 294, 498, 559, 671, 690, 709
Lsp1109I	GCAGC	6 cut(s)	37, 108, 136, 292, 483, 705
LweI	GCATC	2 cut(s)	342, 565
MaeII	ACGT	3 cut(s)	324, 465, 588
MaeIII	GTNAC	2 cut(s)	95, 232
MalI	GATC	3 cut(s)	82, 458, 611
MboI	GATC	3 cut(s)	80, 456, 609
MboII	GAAGA	2 cut(s)	25, 382
MhlI	GDGCHC	2 cut(s)	24, 503
MluCI	AATT	4 cut(s)	203, 490, 516, 530
MlyI	GAGTC	2 cut(s)	365, 395
MmeI	TCCRAC	3 cut(s)	234, 423, 683
MreI	CGCCGGCG	3 cut(s)	10, 350, 434
MroNI	GCCGGC	5 cut(s)	10, 144, 350, 434, 477
MspA1I	CMGCKG	3 cut(s)	121, 196, 474
MspI	CCGG	9 cut(s)	11, 145, 174, 351, 394, 435, 448, 478, 739
MspR9I	CCNGG	4 cut(s)	41, 225, 263, 343
MvaI	CCWGG	4 cut(s)	41, 225, 263, 343
MvnI	CGCG	5 cut(s)	196, 254, 381, 505, 522
MwoI	GCNNNNNNNGC	8 cut(s)	124, 249, 258, 286, 431, 468, 603, 672
NaeI	GCCGGC	5 cut(s)	12, 146, 352, 436, 479
NdeII	GATC	3 cut(s)	80, 456, 609
NgoMIV	GCCGGC	5 cut(s)	10, 144, 350, 434, 477
NlaIII	CATG	2 cut(s)	317, 679
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	2 cut(s)	95, 232
NruI	TCGCGA	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	3 cut(s)	594, 609, 618
PdiI	GCCGGC	5 cut(s)	12, 146, 352, 436, 479
PfeI	GAWTC	1 cut(s)	580
PinAI	ACCGGT	1 cut(s)	738
Ple19I	CGATCG	1 cut(s)	459
PleI	GAGTC	2 cut(s)	364, 395
PpsI	GAGTC	2 cut(s)	364, 395
Ppu21I	YACGTR	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	503
Psp6I	CCWGG	4 cut(s)	39, 223, 261, 341
PspGI	CCWGG	4 cut(s)	39, 223, 261, 341
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	396, 406
PstI	CTGCAG	1 cut(s)	126
PvuI	CGATCG	1 cut(s)	459
RruI	TCGCGA	1 cut(s)	505
Rsr2I	CGGWCCG	1 cut(s)	396
RsrII	CGGWCCG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	503
SacII	CCGCGG	1 cut(s)	197
Sau3AI	GATC	3 cut(s)	80, 456, 609
Sau96I	GGNCC	2 cut(s)	396, 406
SchI	GAGTC	2 cut(s)	365, 395
ScrFI	CCNGG	4 cut(s)	41, 225, 263, 343
SduI	GDGCHC	2 cut(s)	24, 503
SfaNI	GCATC	2 cut(s)	342, 565
SfcI	CTRYAG	1 cut(s)	122
Sfr303I	CCGCGG	1 cut(s)	197
SgrAI	CRCCGGYG	3 cut(s)	10, 350, 434
SgrBI	CCGCGG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	396, 406
Sse9I	AATT	4 cut(s)	203, 490, 516, 530
SstI	GAGCTC	1 cut(s)	503
StyD4I	CCNGG	4 cut(s)	39, 223, 261, 341
TaaI	ACNGT	3 cut(s)	135, 238, 652
TaiI	ACGT	3 cut(s)	327, 468, 591
TaqI	TCGA	6 cut(s)	273, 336, 494, 534, 591, 627
TasI	AATT	4 cut(s)	203, 490, 516, 530
TauI	GCSGC	6 cut(s)	121, 144, 280, 381, 477, 675
TfiI	GAWTC	1 cut(s)	580
TseFI	GTSAC	2 cut(s)	95, 232
TseI	GCWGC	6 cut(s)	50, 121, 124, 280, 471, 693
Tsp45I	GTSAC	2 cut(s)	95, 232
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	3 cut(s)	83, 220, 722
VpaK11BI	GGWCC	2 cut(s)	396, 406
XapI	RAATTY	2 cut(s)	203, 530
XmiI	GTMKAC	1 cut(s)	647
ZraI	GACGTC	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.