No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20210 |
| malus_domestica | MD01G1036700.v1.1 MD15G1317900.v1.1 |
| prunus_persica | Prupe.6G193900_v2.0.a1 |
| pyrus_communis | pycom15g28050 |
| rosa_chinensis | RchiOBHm_Chr2g0112271 |
| rosa_laevigata | RLG00000017967 |
| rosa_multiflora | Rmu_sc0004467.1_g000025 Rmu_sc0011951.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00131570 |
| rosa_rugosa | Rorug02G0179800 |
| rosa_samantha | Rh2AG232300 Rh2BG245600 Rh2CG236500 Rh2DG240000 |
| rosa_wichuraiana | Rw2G018010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 163 |
| AclWI | GGATC | 1 cut(s) | 213 |
| AcsI | RAATTY | 1 cut(s) | 180 |
| AflIII | ACRYGT | 1 cut(s) | 567 |
| AgsI | TTSAA | 2 cut(s) | 18, 286 |
| AluBI | AGCT | 6 cut(s) | 44, 274, 280, 397, 433, 448 |
| AluI | AGCT | 6 cut(s) | 44, 274, 280, 397, 433, 448 |
| Alw26I | GTCTC | 1 cut(s) | 491 |
| AlwI | GGATC | 1 cut(s) | 213 |
| AoxI | GGCC | 1 cut(s) | 288 |
| ApeKI | GCWGC | 4 cut(s) | 186, 448, 492, 558 |
| ApoI | RAATTY | 1 cut(s) | 180 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 63, 134 |
| AspLEI | GCGC | 1 cut(s) | 514 |
| AspS9I | GGNCC | 1 cut(s) | 94 |
| AsuHPI | GGTGA | 2 cut(s) | 266, 430 |
| AvaII | GGWCC | 1 cut(s) | 94 |
| BbsI | GAAGAC | 1 cut(s) | 127 |
| BbvI | GCAGC | 4 cut(s) | 198, 435, 479, 570 |
| BccI | CCATC | 2 cut(s) | 44, 242 |
| BclI | TGATCA | 1 cut(s) | 256 |
| BcoDI | GTCTC | 1 cut(s) | 491 |
| BfoI | RGCGCY | 1 cut(s) | 515 |
| BisI | GCNGC | 4 cut(s) | 187, 449, 493, 559 |
| BlsI | GCNGC | 4 cut(s) | 188, 450, 494, 560 |
| Bme18I | GGWCC | 1 cut(s) | 94 |
| BmgT120I | GGNCC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 127 |
| BpmI | CTGGAG | 2 cut(s) | 219, 296 |
| BpuEI | CTTGAG | 2 cut(s) | 313, 449 |
| BsaJI | CCNNGG | 1 cut(s) | 384 |
| Bse1I | ACTGG | 2 cut(s) | 145, 202 |
| Bse3DI | GCAATG | 1 cut(s) | 419 |
| BseDI | CCNNGG | 1 cut(s) | 384 |
| BseGI | GGATG | 2 cut(s) | 55, 167 |
| BseMI | GCAATG | 1 cut(s) | 419 |
| BseMII | CTCAG | 1 cut(s) | 327 |
| BseNI | ACTGG | 2 cut(s) | 145, 202 |
| BseRI | GAGGAG | 1 cut(s) | 258 |
| BseXI | GCAGC | 4 cut(s) | 198, 435, 479, 570 |
| BseYI | CCCAGC | 1 cut(s) | 5 |
| BshFI | GGCC | 1 cut(s) | 290 |
| BsmAI | GTCTC | 1 cut(s) | 491 |
| BsmI | GAATGC | 2 cut(s) | 365, 451 |
| BsnI | GGCC | 1 cut(s) | 290 |
| Bsp143I | GATC | 3 cut(s) | 112, 205, 256 |
| BspANI | GGCC | 1 cut(s) | 290 |
| BspCNI | CTCAG | 1 cut(s) | 328 |
| BspPI | GGATC | 1 cut(s) | 213 |
| BsrDI | GCAATG | 1 cut(s) | 419 |
| BsrI | ACTGG | 2 cut(s) | 145, 202 |
| BssECI | CCNNGG | 1 cut(s) | 384 |
| BssMI | GATC | 3 cut(s) | 112, 205, 256 |
| Bst4CI | ACNGT | 1 cut(s) | 160 |
| BstC8I | GCNNGC | 2 cut(s) | 381, 516 |
| BstDEI | CTNAG | 1 cut(s) | 336 |
| BstF5I | GGATG | 2 cut(s) | 55, 167 |
| BstH2I | RGCGCY | 1 cut(s) | 515 |
| BstHHI | GCGC | 1 cut(s) | 514 |
| BstKTI | GATC | 3 cut(s) | 115, 208, 259 |
| BstMAI | GTCTC | 1 cut(s) | 491 |
| BstMBI | GATC | 3 cut(s) | 112, 205, 256 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 320, 380, 492 |
| BstNSI | RCATGY | 1 cut(s) | 571 |
| BstV1I | GCAGC | 4 cut(s) | 198, 435, 479, 570 |
| BstV2I | GAAGAC | 1 cut(s) | 127 |
| BsuRI | GGCC | 1 cut(s) | 290 |
| BtsCI | GGATG | 2 cut(s) | 55, 167 |
| BtsIMutI | CAGTG | 1 cut(s) | 138 |
| Cac8I | GCNNGC | 2 cut(s) | 381, 516 |
| CfoI | GCGC | 1 cut(s) | 514 |
| Cfr13I | GGNCC | 1 cut(s) | 94 |
| CviAII | CATG | 6 cut(s) | 127, 172, 190, 221, 235, 568 |
| DdeI | CTNAG | 1 cut(s) | 336 |
| DpnI | GATC | 3 cut(s) | 114, 207, 258 |
| DpnII | GATC | 3 cut(s) | 112, 205, 256 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 163 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 163 |
| Eco147I | AGGCCT | 1 cut(s) | 290 |
| Eco47I | GGWCC | 1 cut(s) | 94 |
| FaeI | CATG | 6 cut(s) | 130, 175, 193, 224, 238, 571 |
| FatI | CATG | 6 cut(s) | 126, 171, 189, 220, 234, 567 |
| FbaI | TGATCA | 1 cut(s) | 256 |
| Fnu4HI | GCNGC | 4 cut(s) | 187, 449, 493, 559 |
| FokI | GGATG | 2 cut(s) | 62, 154 |
| Fsp4HI | GCNGC | 4 cut(s) | 187, 449, 493, 559 |
| GlaI | GCGC | 1 cut(s) | 513 |
| GluI | GCNGC | 4 cut(s) | 187, 449, 493, 559 |
| GsaI | CCCAGC | 1 cut(s) | 9 |
| GsuI | CTGGAG | 2 cut(s) | 219, 296 |
| HaeII | RGCGCY | 1 cut(s) | 515 |
| HaeIII | GGCC | 1 cut(s) | 290 |
| HhaI | GCGC | 1 cut(s) | 514 |
| Hin1II | CATG | 6 cut(s) | 130, 175, 193, 224, 238, 571 |
| Hin6I | GCGC | 1 cut(s) | 512 |
| HinP1I | GCGC | 1 cut(s) | 512 |
| HinfI | GANTC | 1 cut(s) | 34 |
| HphI | GGTGA | 2 cut(s) | 266, 430 |
| Hpy188I | TCNGA | 1 cut(s) | 261 |
| Hpy188III | TCNNGA | 2 cut(s) | 209, 479 |
| HpyAV | CCTTC | 2 cut(s) | 280, 325 |
| HpyCH4III | ACNGT | 1 cut(s) | 160 |
| HpyCH4V | TGCA | 5 cut(s) | 26, 149, 186, 451, 464 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 320, 380, 492 |
| HpyF3I | CTNAG | 1 cut(s) | 336 |
| Hsp92II | CATG | 6 cut(s) | 130, 175, 193, 224, 238, 571 |
| HspAI | GCGC | 1 cut(s) | 512 |
| Ksp22I | TGATCA | 1 cut(s) | 256 |
| Kzo9I | GATC | 3 cut(s) | 112, 205, 256 |
| LmnI | GCTCC | 1 cut(s) | 277 |
| LpnPI | CCDG | 8 cut(s) | 53, 72, 126, 183, 260, 394, 464, 522 |
| Lsp1109I | GCAGC | 4 cut(s) | 198, 435, 479, 570 |
| MalI | GATC | 3 cut(s) | 114, 207, 258 |
| MboI | GATC | 3 cut(s) | 112, 205, 256 |
| MboII | GAAGA | 3 cut(s) | 107, 127, 340 |
| MluCI | AATT | 3 cut(s) | 106, 180, 262 |
| MnlI | CCTC | 9 cut(s) | 107, 129, 196, 236, 288, 309, 313, 379, 414 |
| MroXI | GAANNNNTTC | 2 cut(s) | 63, 134 |
| MseI | TTAA | 1 cut(s) | 227 |
| Mva1269I | GAATGC | 2 cut(s) | 365, 451 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 320, 380, 492 |
| NdeII | GATC | 3 cut(s) | 112, 205, 256 |
| NlaIII | CATG | 6 cut(s) | 130, 175, 193, 224, 238, 571 |
| NmeAIII | GCCGAG | 1 cut(s) | 409 |
| NspI | RCATGY | 1 cut(s) | 571 |
| PceI | AGGCCT | 1 cut(s) | 290 |
| PciI | ACATGT | 1 cut(s) | 567 |
| PctI | GAATGC | 2 cut(s) | 365, 451 |
| PdmI | GAANNNNTTC | 2 cut(s) | 63, 134 |
| PfeI | GAWTC | 1 cut(s) | 34 |
| PkrI | GCNGC | 4 cut(s) | 188, 450, 494, 560 |
| PscI | ACATGT | 1 cut(s) | 567 |
| PspFI | CCCAGC | 1 cut(s) | 5 |
| PspPI | GGNCC | 1 cut(s) | 94 |
| SaqAI | TTAA | 1 cut(s) | 227 |
| SatI | GCNGC | 4 cut(s) | 187, 449, 493, 559 |
| Sau3AI | GATC | 3 cut(s) | 112, 205, 256 |
| Sau96I | GGNCC | 1 cut(s) | 94 |
| SetI | ASST | 8 cut(s) | 46, 99, 276, 282, 399, 425, 435, 450 |
| SinI | GGWCC | 1 cut(s) | 94 |
| SmlI | CTYRAG | 2 cut(s) | 292, 428 |
| SmoI | CTYRAG | 2 cut(s) | 292, 428 |
| Sse9I | AATT | 3 cut(s) | 106, 180, 262 |
| SseBI | AGGCCT | 1 cut(s) | 290 |
| StuI | AGGCCT | 1 cut(s) | 290 |
| TaaI | ACNGT | 1 cut(s) | 160 |
| TaqI | TCGA | 1 cut(s) | 231 |
| TasI | AATT | 3 cut(s) | 106, 180, 262 |
| TfiI | GAWTC | 1 cut(s) | 34 |
| Tru1I | TTAA | 1 cut(s) | 227 |
| Tru9I | TTAA | 1 cut(s) | 227 |
| TscAI | CASTG | 1 cut(s) | 145 |
| TseI | GCWGC | 4 cut(s) | 186, 448, 492, 558 |
| TspDTI | ATGAA | 4 cut(s) | 47, 72, 143, 188 |
| TspRI | CASTG | 1 cut(s) | 145 |
| VpaK11BI | GGWCC | 1 cut(s) | 94 |
| XapI | RAATTY | 1 cut(s) | 180 |
| XceI | RCATGY | 1 cut(s) | 571 |
| XmnI | GAANNNNTTC | 2 cut(s) | 63, 134 |