Rw2G018010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015522
Physical Location & Seq
Forward (+)
22757039 .. 22757568
530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018010.1

Sequence Viewer

Length: 495 bp
ATGAATCTTAAAGCTGTGGATGGGAATGAAATGTTTCAGAATTGTGATCTTCCTCCACCCATGAAAGTCTTCACAGGTTCTGCAGACAAGACTGTTGTGTCATCCATGAACAGAATTTGCAGCATGATGGCCCGAGAAGATCACGAAAACAGCCACGAGTTAATCGACATGTATAGAGGAGACGGCGATCAGAATTGTGGGAAGCTGGAGCTCTTGAAAGCCTTGAGGCTTTCGCAAACCAGAGCGAGGGAGGCAGAGAAGAAGGCTGAGAAGTTGGCAAAGGAAAAGGAATGTCTTTCCAATGCTCTGCTCGCTGAGGCGAAAGAGCTTTTTGCTTACCGGCAATGGGTGAGGTTGCTTGAGCTAAAAGTTTCGAAGCTGCATTCACAATTTGCAGAACAAGAACATCAGGAATGCTGTGGCTGTGAGACTTGGATTGTAGCTTTGGCACTTTGTTTGGGGATTGCTGGTGTTGGGTTTGCATACTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.51

Weight (kDa)

5.85

Isoelectric Point (pI)

19.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015522)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20210
malus_domestica MD01G1036700.v1.1 MD15G1317900.v1.1
prunus_persica Prupe.6G193900_v2.0.a1
pyrus_communis pycom15g28050
rosa_chinensis RchiOBHm_Chr2g0112271
rosa_laevigata RLG00000017967
rosa_multiflora Rmu_sc0004467.1_g000025 Rmu_sc0011951.1_g000003
rosa_roxburghii Rroxscaffold_2G00131570
rosa_rugosa Rorug02G0179800
rosa_samantha Rh2AG232300 Rh2BG245600 Rh2CG236500 Rh2DG240000
rosa_wichuraiana Rw2G018010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 97
AcsI RAATTY 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 246, 346
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 7 cut(s) 14, 205, 211, 328, 364, 379, 443
AluI AGCT 7 cut(s) 14, 205, 211, 328, 364, 379, 443
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 2 cut(s) 174, 422
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 120, 379
ApoI RAATTY 1 cut(s) 114
Asp700I GAANNNNTTC 2 cut(s) 33, 68
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 361
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 132
BanII GRGCYC 1 cut(s) 213
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 132, 366
BccI CCATC 2 cut(s) 14, 121
BceAI ACGGC 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 174, 422
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 2 cut(s) 121, 380
BlsI GCNGC 2 cut(s) 122, 381
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 2 cut(s) 244, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 346
Bse118I RCCGGY 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 350
BseGI GGATG 2 cut(s) 25, 101
BseLI CCNNNNNNNGG 2 cut(s) 246, 346
BseMI GCAATG 1 cut(s) 350
BseMII CTCAG 2 cut(s) 258, 306
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 132, 366
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 246, 346
BsmAI GTCTC 2 cut(s) 174, 422
BsmBI CGTCTC 1 cut(s) 174
BsmI GAATGC 2 cut(s) 382, 419
BsnI GGCC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 3 cut(s) 46, 139, 187
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 259, 307
BspMAI CTGCAG 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 339
BssMI GATC 3 cut(s) 46, 139, 187
BssSI CACGAG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 94
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 267, 315
BstF5I GGATG 2 cut(s) 25, 101
BstKTI GATC 3 cut(s) 49, 142, 190
BstMAI GTCTC 2 cut(s) 174, 422
BstMBI GATC 3 cut(s) 46, 139, 187
BstMWI GCNNNNNNNGC 2 cut(s) 251, 311
BstNSI RCATGY 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 132, 366
BstV2I GAAGAC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 25, 101
Cac8I GCNNGC 1 cut(s) 312
CaiI CAGNNNCTG 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 130
CviAII CATG 4 cut(s) 61, 106, 124, 169
DdeI CTNAG 2 cut(s) 267, 315
DpnI GATC 3 cut(s) 48, 141, 189
DpnII GATC 3 cut(s) 46, 139, 187
DrdI GACNNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 4 cut(s) 64, 109, 127, 172
FaiI YATR 6 cut(s) 62, 107, 125, 170, 174, 484
FatI CATG 4 cut(s) 60, 105, 123, 168
Fnu4HI GCNGC 2 cut(s) 121, 380
FokI GGATG 2 cut(s) 32, 88
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 121, 380
GluI GCNGC 2 cut(s) 121, 380
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 340
Hin1II CATG 4 cut(s) 64, 109, 127, 172
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 340
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 39, 192
Hpy188III TCNNGA 3 cut(s) 143, 214, 410
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 83, 120, 382, 395, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 311
HpyF3I CTNAG 2 cut(s) 267, 315
Hsp92II CATG 4 cut(s) 64, 109, 127, 172
Kzo9I GATC 3 cut(s) 46, 139, 187
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 6 cut(s) 60, 191, 253, 353, 395, 453
Lsp1109I GCAGC 2 cut(s) 132, 366
MalI GATC 3 cut(s) 48, 141, 189
MboI GATC 3 cut(s) 46, 139, 187
MboII GAAGA 4 cut(s) 41, 61, 149, 271
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 4 cut(s) 40, 114, 193, 389
MnlI CCTC 7 cut(s) 63, 170, 219, 240, 244, 310, 345
MroXI GAANNNNTTC 2 cut(s) 33, 68
MseI TTAA 2 cut(s) 9, 161
MspI CCGG 1 cut(s) 340
Mva1269I GAATGC 2 cut(s) 382, 419
MwoI GCNNNNNNNGC 2 cut(s) 251, 311
NdeII GATC 3 cut(s) 46, 139, 187
NlaIII CATG 4 cut(s) 64, 109, 127, 172
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 1 cut(s) 374
PciI ACATGT 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 2 cut(s) 382, 419
PdmI GAANNNNTTC 2 cut(s) 33, 68
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 122, 381
PscI ACATGT 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 9, 161
SatI GCNGC 2 cut(s) 121, 380
Sau3AI GATC 3 cut(s) 46, 139, 187
Sau96I GGNCC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 213
SetI ASST 9 cut(s) 16, 79, 207, 213, 330, 356, 366, 381, 445
SfcI CTRYAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 223, 359
SmoI CTYRAG 2 cut(s) 223, 359
Sse9I AATT 4 cut(s) 40, 114, 193, 389
SstI GAGCTC 1 cut(s) 213
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 165, 374
TasI AATT 4 cut(s) 40, 114, 193, 389
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 9, 161
Tru9I TTAA 2 cut(s) 9, 161
TseI GCWGC 2 cut(s) 120, 379
TspDTI ATGAA 4 cut(s) 17, 42, 77, 122
XapI RAATTY 1 cut(s) 114
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 2 cut(s) 33, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.