RchiOBHm_Chr2g0112271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015522
Physical Location & Seq
Forward (+)
24163903 .. 24164937
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48576

Sequence Viewer

Length: 600 bp
ATGAATCCCGCATCAATGGCTGGGTGGATTTCAAATAACGCAAAGATGAATCTTAAAGCTGTGGATGGGAATGAAATGTTTCAGGGTCTATCCAAGTCTGCTGGTTTGGACCTTATACAGAATTGTGATCTTCCTCCACCCATGAAAGTCTTCACAGGTTCTGCAGACAAGACTGTTGTGTCATCCATGAACAGAATTTGCAGCATGATGGCCCGAGAAGATCACGAAAACAGCCACGAGTTAATCGACATGTATAGAGGAGACGGCGATCAGAATTATGGGAAGCTGGAGCTCTTGAAAGCCTTGAGGCTTTCGCAAACAAGAGCGAGGGAGGCAGAGAAGAAGGCTGAGAAGTTGGCAAAGGAAAAGGAATGTCTTTCCAATGCTCTGCTCGCTGAGGCGAAAGAGCTTTTTGCTTACCGGCAATGGGTGAGGTTGCTTGAGCTAAAAGTTTCGAAGCTGCATTCACAATTTGCAGAACAAGAACATCAGGAATGCTGTGGCTGTGAGACTTGGATTGTAGCTTTGGCACTTTGTTTGGGGATTGCTGGTGTTGGGTTTGCATTTGGCAGCAGATATTTCATTTCAGAGTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.15

Weight (kDa)

6.12

Isoelectric Point (pI)

25.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015522)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20210
malus_domestica MD01G1036700.v1.1 MD15G1317900.v1.1
prunus_persica Prupe.6G193900_v2.0.a1
pyrus_communis pycom15g28050
rosa_chinensis RchiOBHm_Chr2g0112271
rosa_laevigata RLG00000017967
rosa_multiflora Rmu_sc0004467.1_g000025 Rmu_sc0011951.1_g000003
rosa_roxburghii Rroxscaffold_2G00131570
rosa_rugosa Rorug02G0179800
rosa_samantha Rh2AG232300 Rh2BG245600 Rh2CG236500 Rh2DG240000
rosa_wichuraiana Rw2G018010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 178
AciI CCGC 1 cut(s) 9
AcsI RAATTY 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 427
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 33, 298
AluBI AGCT 7 cut(s) 59, 286, 292, 409, 445, 460, 524
AluI AGCT 7 cut(s) 59, 286, 292, 409, 445, 460, 524
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 2 cut(s) 255, 503
AlwNI CAGNNNCTG 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 201, 460, 570
ApoI RAATTY 1 cut(s) 195
Asp700I GAANNNNTTC 2 cut(s) 78, 149
AspS9I GGNCC 2 cut(s) 109, 211
AsuHPI GGTGA 1 cut(s) 442
AsuII TTCGAA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 294
BauI CACGAG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 294
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 213, 447, 582
BccI CCATC 2 cut(s) 59, 202
BceAI ACGGC 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 255, 503
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 202, 461, 571
BlsI GCNGC 3 cut(s) 203, 462, 572
Bme18I GGWCC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 109, 211
BmsI GCATC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 308
Bpu10I CCTNAGC 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 2 cut(s) 325, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse118I RCCGGY 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 431
BseGI GGATG 2 cut(s) 70, 182
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 431
BseMII CTCAG 2 cut(s) 339, 387
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 3 cut(s) 213, 447, 582
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 2 cut(s) 255, 503
BsmBI CGTCTC 1 cut(s) 255
BsmI GAATGC 2 cut(s) 463, 500
BsnI GGCC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 127, 220, 268
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 340, 388
BspMAI CTGCAG 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 431
BsrFI RCCGGY 1 cut(s) 420
BssAI RCCGGY 1 cut(s) 420
BssMI GATC 3 cut(s) 127, 220, 268
BssSI CACGAG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 175
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 348, 396
BstF5I GGATG 2 cut(s) 70, 182
BstKTI GATC 3 cut(s) 130, 223, 271
BstMAI GTCTC 2 cut(s) 255, 503
BstMBI GATC 3 cut(s) 127, 220, 268
BstMWI GCNNNNNNNGC 3 cut(s) 17, 332, 392
BstNSI RCATGY 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 213, 447, 582
BstV2I GAAGAC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 70, 182
Cac8I GCNNGC 1 cut(s) 393
CaiI CAGNNNCTG 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 109, 211
CviAII CATG 4 cut(s) 142, 187, 205, 250
DdeI CTNAG 2 cut(s) 348, 396
DpnI GATC 3 cut(s) 129, 222, 270
DpnII GATC 3 cut(s) 127, 220, 268
DrdI GACNNNNNNGTC 1 cut(s) 178
DseDI GACNNNNNNGTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 4 cut(s) 145, 190, 208, 253
FaiI YATR 8 cut(s) 116, 143, 188, 206, 251, 255, 279, 598
FatI CATG 4 cut(s) 141, 186, 204, 249
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 202, 461, 571
FokI GGATG 2 cut(s) 77, 169
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 202, 461, 571
GluI GCNGC 3 cut(s) 202, 461, 571
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 308
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 421
Hin1II CATG 4 cut(s) 145, 190, 208, 253
HinfI GANTC 3 cut(s) 4, 49, 590
HpaII CCGG 1 cut(s) 421
HphI GGTGA 1 cut(s) 442
Hpy188I TCNGA 2 cut(s) 273, 589
Hpy188III TCNNGA 3 cut(s) 224, 295, 491
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 5 cut(s) 164, 201, 463, 476, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 332, 392
HpyF3I CTNAG 2 cut(s) 348, 396
Hsp92II CATG 4 cut(s) 145, 190, 208, 253
Kzo9I GATC 3 cut(s) 127, 220, 268
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 8 cut(s) 6, 68, 87, 141, 272, 434, 476, 534
Lsp1109I GCAGC 3 cut(s) 213, 447, 582
LweI GCATC 1 cut(s) 20
MalI GATC 3 cut(s) 129, 222, 270
MboI GATC 3 cut(s) 127, 220, 268
MboII GAAGA 4 cut(s) 122, 142, 230, 352
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 4 cut(s) 121, 195, 274, 470
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 7 cut(s) 144, 251, 300, 321, 325, 391, 426
MroXI GAANNNNTTC 2 cut(s) 78, 149
MseI TTAA 2 cut(s) 54, 242
MspI CCGG 1 cut(s) 421
Mva1269I GAATGC 2 cut(s) 463, 500
MwoI GCNNNNNNNGC 3 cut(s) 17, 332, 392
NdeII GATC 3 cut(s) 127, 220, 268
NlaIII CATG 4 cut(s) 145, 190, 208, 253
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 455
PciI ACATGT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 2 cut(s) 463, 500
PdmI GAANNNNTTC 2 cut(s) 78, 149
PfeI GAWTC 2 cut(s) 4, 49
PkrI GCNGC 3 cut(s) 203, 462, 572
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PscI ACATGT 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 20
PspPI GGNCC 2 cut(s) 109, 211
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 2 cut(s) 54, 242
SatI GCNGC 3 cut(s) 202, 461, 571
Sau3AI GATC 3 cut(s) 127, 220, 268
Sau96I GGNCC 2 cut(s) 109, 211
SchI GAGTC 1 cut(s) 599
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 2 cut(s) 304, 440
SmoI CTYRAG 2 cut(s) 304, 440
Sse9I AATT 4 cut(s) 121, 195, 274, 470
SsiI CCGC 1 cut(s) 9
SstI GAGCTC 1 cut(s) 294
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 246, 455
TasI AATT 4 cut(s) 121, 195, 274, 470
TfiI GAWTC 2 cut(s) 4, 49
Tru1I TTAA 2 cut(s) 54, 242
Tru9I TTAA 2 cut(s) 54, 242
TseI GCWGC 3 cut(s) 201, 460, 570
TspDTI ATGAA 6 cut(s) 17, 62, 87, 158, 203, 571
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 253
XmnI GAANNNNTTC 2 cut(s) 78, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.