Rh2DG240000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015522
Physical Location & Seq
Forward (+)
24299797 .. 24300357
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG240000.1

Sequence Viewer

Length: 561 bp
ATGGCTGGGTGGATTTCAAATAACGCAAAGATGAATCTTAAAGCTGTGGATGGGAATGAAATGTTTCAGGGTCTATCCAAGTCTGCTGGTTTGGACCTTATACAGAATTGTGATCTTCCTCCACCCATGAAAGTCTTCACAGGTTCTGCAGACAAGACTGTTGTGTCATCCATGAACAGAATTTGCAGCATGATGGCCCGAGAAGATCACGAAAACAGCCACGAGTTAATCGACATGTATAGAGGAGACGGCGATCAGAATTATGGGAAGCTGGAGCTCTTGAAAGCCTTGAGGCTTTCGCAAACAAGAGCGAGGGAGGCAGAGAAGAAGGCTGAGAAGTTGGCAAAGGAAAAGGAATGTCTTTCCAATGCTCTGCTCGCTGAGGCGAAAGAGCTTTTTGCTTACCGGCAATGGGTGAGGTTGCTTGAGCTAAAAGTTTCGAAGCTGCATTCACAATTTGCAGAACAAGAACATCAGGAATGCTGTGGCTGTGAGACTTGGATTGTAGCTTTGGCACTTTGTTTGGGGATTGCTGGTGTTGGGTTTGCATACTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.82

Weight (kDa)

6.11

Isoelectric Point (pI)

21.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015522)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20210
malus_domestica MD01G1036700.v1.1 MD15G1317900.v1.1
prunus_persica Prupe.6G193900_v2.0.a1
pyrus_communis pycom15g28050
rosa_chinensis RchiOBHm_Chr2g0112271
rosa_laevigata RLG00000017967
rosa_multiflora Rmu_sc0004467.1_g000025 Rmu_sc0011951.1_g000003
rosa_roxburghii Rroxscaffold_2G00131570
rosa_rugosa Rorug02G0179800
rosa_samantha Rh2AG232300 Rh2BG245600 Rh2CG236500 Rh2DG240000
rosa_wichuraiana Rw2G018010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 18, 283
AluBI AGCT 7 cut(s) 44, 271, 277, 394, 430, 445, 509
AluI AGCT 7 cut(s) 44, 271, 277, 394, 430, 445, 509
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 2 cut(s) 240, 488
AlwNI CAGNNNCTG 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 186, 445
ApoI RAATTY 1 cut(s) 180
Asp700I GAANNNNTTC 2 cut(s) 63, 134
AspS9I GGNCC 2 cut(s) 94, 196
AsuHPI GGTGA 1 cut(s) 427
AsuII TTCGAA 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 198
AvaII GGWCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 279
BauI CACGAG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 198, 432
BccI CCATC 2 cut(s) 44, 187
BceAI ACGGC 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 240, 488
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 187, 446
BlsI GCNGC 2 cut(s) 188, 447
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 94, 196
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 440
BpuEI CTTGAG 2 cut(s) 310, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 416
BseGI GGATG 2 cut(s) 55, 167
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 324, 372
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 198, 432
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 240, 488
BsmBI CGTCTC 1 cut(s) 240
BsmI GAATGC 2 cut(s) 448, 485
BsnI GGCC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 112, 205, 253
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 325, 373
BspMAI CTGCAG 1 cut(s) 151
BspT104I TTCGAA 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 405
BssMI GATC 3 cut(s) 112, 205, 253
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 333, 381
BstF5I GGATG 2 cut(s) 55, 167
BstKTI GATC 3 cut(s) 115, 208, 256
BstMAI GTCTC 2 cut(s) 240, 488
BstMBI GATC 3 cut(s) 112, 205, 253
BstMWI GCNNNNNNNGC 2 cut(s) 317, 377
BstNSI RCATGY 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 198, 432
BstV2I GAAGAC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 2 cut(s) 55, 167
Cac8I GCNNGC 1 cut(s) 378
CaiI CAGNNNCTG 1 cut(s) 146
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 2 cut(s) 94, 196
CviAII CATG 4 cut(s) 127, 172, 190, 235
DdeI CTNAG 2 cut(s) 333, 381
DpnI GATC 3 cut(s) 114, 207, 255
DpnII GATC 3 cut(s) 112, 205, 253
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 4 cut(s) 130, 175, 193, 238
FaiI YATR 8 cut(s) 101, 128, 173, 191, 236, 240, 264, 550
FatI CATG 4 cut(s) 126, 171, 189, 234
Fnu4HI GCNGC 2 cut(s) 187, 446
FokI GGATG 2 cut(s) 62, 154
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 187, 446
GluI GCNGC 2 cut(s) 187, 446
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 406
Hin1II CATG 4 cut(s) 130, 175, 193, 238
HinfI GANTC 1 cut(s) 34
HpaII CCGG 1 cut(s) 406
HphI GGTGA 1 cut(s) 427
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 3 cut(s) 209, 280, 476
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 5 cut(s) 149, 186, 448, 461, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 377
HpyF3I CTNAG 2 cut(s) 333, 381
Hsp92II CATG 4 cut(s) 130, 175, 193, 238
Kzo9I GATC 3 cut(s) 112, 205, 253
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 7 cut(s) 53, 72, 126, 257, 419, 461, 519
Lsp1109I GCAGC 2 cut(s) 198, 432
MalI GATC 3 cut(s) 114, 207, 255
MboI GATC 3 cut(s) 112, 205, 253
MboII GAAGA 4 cut(s) 107, 127, 215, 337
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 4 cut(s) 106, 180, 259, 455
MnlI CCTC 7 cut(s) 129, 236, 285, 306, 310, 376, 411
MroXI GAANNNNTTC 2 cut(s) 63, 134
MseI TTAA 2 cut(s) 39, 227
MspI CCGG 1 cut(s) 406
Mva1269I GAATGC 2 cut(s) 448, 485
MwoI GCNNNNNNNGC 2 cut(s) 317, 377
NdeII GATC 3 cut(s) 112, 205, 253
NlaIII CATG 4 cut(s) 130, 175, 193, 238
NspI RCATGY 1 cut(s) 238
NspV TTCGAA 1 cut(s) 440
PciI ACATGT 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 2 cut(s) 448, 485
PdmI GAANNNNTTC 2 cut(s) 63, 134
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 188, 447
PscI ACATGT 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 5
PspPI GGNCC 2 cut(s) 94, 196
PstI CTGCAG 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 39, 227
SatI GCNGC 2 cut(s) 187, 446
Sau3AI GATC 3 cut(s) 112, 205, 253
Sau96I GGNCC 2 cut(s) 94, 196
SduI GDGCHC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 440
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 289, 425
SmoI CTYRAG 2 cut(s) 289, 425
Sse9I AATT 4 cut(s) 106, 180, 259, 455
SstI GAGCTC 1 cut(s) 279
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 231, 440
TasI AATT 4 cut(s) 106, 180, 259, 455
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 39, 227
Tru9I TTAA 2 cut(s) 39, 227
TseI GCWGC 2 cut(s) 186, 445
TspDTI ATGAA 4 cut(s) 47, 72, 143, 188
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 180
XceI RCATGY 1 cut(s) 238
XmnI GAANNNNTTC 2 cut(s) 63, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.