Prupe.6G193900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015522
Physical Location & Seq
Reverse (-)
20117615 .. 20118271
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G193900.1

Sequence Viewer

Length: 657 bp
ATGGCTGGGTGGACATCAAATAACCCAAAGTTGAATCCCAAAGCAGTGGATGGGAATGAAATGTTGAAGGGTCTAAATTTAACTCCTGTTTCTCACAAGTCTTCTGGTTTGGACCTCATACAGAACTGCGATCTTCCTCCTCCGATGAAAGTCTTTACGGGTTCCGATAACAAGACTGTTTTGTCATCCATGAACAGGGCTTGCAGCATGAGTATGACCCAAGAAGATGATAACAGGGATGAATTTGACATGTGTGGAAACAGAGGTGACGGCGGCGAGAATGAGAAGTTGGAGCTTTTGAAGGCGTTGAGGCTGTCGCAGACAAGAGCAAGAGAGGCAGAGAAGAAGGCTGAGAAATTGGGAAAGGAGAAAGACTGCCTTTCTGATGCTCTGCTTGCGGAGGCCAGGGAGTTGTTTGCGTATAGGCAATGGGTGAGGTTGCTTGAGCTTAAAGTTTCCAAGTTGGAGTCACAATGGGCAGAGCAAGAGGAAGAGGGATCTTTTTTGGGTGGCAGATCAAAGGGTTTGGAGGAGCAGTCGGTGAAGGAAGGAGATGAGGGTGAGAATGGGGATGGCATTTCTTGGATTGTAGCTTTGGCTCTTTGTTTTGGCATTGCCGGGGTAGGCTTTGCATTTGGCTGCAGATATTTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

23.99

Weight (kDa)

4.94

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015522)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20210
malus_domestica MD01G1036700.v1.1 MD15G1317900.v1.1
prunus_persica Prupe.6G193900_v2.0.a1
pyrus_communis pycom15g28050
rosa_chinensis RchiOBHm_Chr2g0112271
rosa_laevigata RLG00000017967
rosa_multiflora Rmu_sc0004467.1_g000025 Rmu_sc0011951.1_g000003
rosa_roxburghii Rroxscaffold_2G00131570
rosa_rugosa Rorug02G0179800
rosa_samantha Rh2AG232300 Rh2BG245600 Rh2CG236500 Rh2DG240000
rosa_wichuraiana Rw2G018010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AciI CCGC 2 cut(s) 273, 398
AclWI GGATC 1 cut(s) 505
AcsI RAATTY 2 cut(s) 76, 242
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 3 cut(s) 34, 67, 301
AjnI CCWGG 1 cut(s) 404
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 3 cut(s) 295, 448, 593
AluI AGCT 3 cut(s) 295, 448, 593
AlwI GGATC 1 cut(s) 505
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 2 cut(s) 204, 639
ApoI RAATTY 2 cut(s) 76, 242
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 619
AsuHPI GGTGA 4 cut(s) 278, 445, 553, 572
AvaII GGWCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 216, 626
BccI CCATC 2 cut(s) 44, 566
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 406
BcnI CCSGG 1 cut(s) 619
BfmI CTRYAG 1 cut(s) 640
BisI GCNGC 3 cut(s) 205, 274, 640
BlsI GCNGC 3 cut(s) 206, 275, 641
Bme1390I CCNGG 2 cut(s) 406, 619
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 406, 619
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 619
BsaJI CCNNGG 2 cut(s) 405, 618
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse3DI GCAATG 2 cut(s) 434, 612
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 2 cut(s) 405, 618
BseGI GGATG 4 cut(s) 55, 185, 244, 577
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 2 cut(s) 434, 612
BseMII CTCAG 1 cut(s) 342
BseRI GAGGAG 2 cut(s) 129, 545
BseXI GCAGC 2 cut(s) 216, 626
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 404
BsiSI CCGG 1 cut(s) 618
BslI CCNNNNNNNGG 1 cut(s) 195
BsnI GGCC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 130, 497, 515
BspACI CCGC 2 cut(s) 273, 398
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 644
BspPI GGATC 1 cut(s) 505
BsrDI GCAATG 2 cut(s) 434, 612
BssECI CCNNGG 2 cut(s) 405, 618
BssMI GATC 3 cut(s) 130, 497, 515
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 202, 396
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 4 cut(s) 55, 185, 244, 577
BstKTI GATC 3 cut(s) 133, 500, 518
BstMBI GATC 3 cut(s) 130, 497, 515
BstMWI GCNNNNNNNGC 2 cut(s) 335, 395
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 404, 617
BstSFI CTRYAG 1 cut(s) 640
BstV1I GCAGC 2 cut(s) 216, 626
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 497
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 1 cut(s) 497
BsuRI GGCC 1 cut(s) 404
BtsCI GGATG 4 cut(s) 55, 185, 244, 577
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 202, 396
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 3 cut(s) 190, 208, 250
DdeI CTNAG 1 cut(s) 351
DpnI GATC 3 cut(s) 132, 499, 517
DpnII GATC 3 cut(s) 130, 497, 515
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 404
FaeI CATG 3 cut(s) 193, 211, 253
FaiI YATR 7 cut(s) 119, 191, 209, 215, 251, 423, 652
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 3 cut(s) 189, 207, 249
Fnu4HI GCNGC 3 cut(s) 205, 274, 640
FokI GGATG 4 cut(s) 62, 172, 251, 584
Fsp4HI GCNGC 3 cut(s) 205, 274, 640
GluI GCNGC 3 cut(s) 205, 274, 640
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 404
HapII CCGG 1 cut(s) 618
Hin1II CATG 3 cut(s) 193, 211, 253
HinfI GANTC 2 cut(s) 34, 467
HpaII CCGG 1 cut(s) 618
HphI GGTGA 4 cut(s) 278, 445, 553, 572
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 3 cut(s) 144, 166, 385
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 5 cut(s) 61, 295, 340, 538, 542
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 3 cut(s) 204, 632, 642
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 395
HpyF3I CTNAG 1 cut(s) 351
Hsp92II CATG 3 cut(s) 193, 211, 253
Kzo9I GATC 3 cut(s) 130, 497, 515
LmnI GCTCC 2 cut(s) 292, 532
LpnPI CCDG 7 cut(s) 90, 99, 181, 220, 391, 418, 631
Lsp1109I GCAGC 2 cut(s) 216, 626
LweI GCATC 1 cut(s) 376
MaeIII GTNAC 2 cut(s) 266, 468
MalI GATC 3 cut(s) 132, 499, 517
MboI GATC 3 cut(s) 130, 497, 515
MboII GAAGA 5 cut(s) 93, 125, 236, 355, 503
MflI RGATCY 1 cut(s) 497
MluCI AATT 3 cut(s) 76, 242, 356
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 2 cut(s) 270, 444
MseI TTAA 2 cut(s) 80, 450
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 2 cut(s) 406, 619
MvaI CCWGG 1 cut(s) 406
MwoI GCNNNNNNNGC 2 cut(s) 335, 395
NciI CCSGG 1 cut(s) 619
NdeII GATC 3 cut(s) 130, 497, 515
NlaIII CATG 3 cut(s) 193, 211, 253
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 266, 468
NspI RCATGY 1 cut(s) 253
PciI ACATGT 1 cut(s) 249
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 206, 275, 641
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PscI ACATGT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 112
PstI CTGCAG 1 cut(s) 644
PsuI RGATCY 1 cut(s) 497
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 2 cut(s) 80, 450
SatI GCNGC 3 cut(s) 205, 274, 640
Sau3AI GATC 3 cut(s) 130, 497, 515
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 2 cut(s) 406, 619
SetI ASST 6 cut(s) 117, 268, 297, 440, 450, 595
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 640
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 3 cut(s) 76, 242, 356
SsiI CCGC 2 cut(s) 273, 398
StyD4I CCNGG 2 cut(s) 404, 617
TaaI ACNGT 1 cut(s) 178
TasI AATT 3 cut(s) 76, 242, 356
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 80, 450
Tru9I TTAA 2 cut(s) 80, 450
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 2 cut(s) 266, 468
TseI GCWGC 2 cut(s) 204, 639
Tsp45I GTSAC 2 cut(s) 266, 468
TspDTI ATGAA 4 cut(s) 72, 161, 206, 255
TspRI CASTG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 2 cut(s) 76, 242
XceI RCATGY 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.