Rroxscaffold_2G00131570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015522
Physical Location & Seq
Reverse (-)
68260423 .. 68261004
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131570.1

Sequence Viewer

Length: 582 bp
ATGAATCCCGCATCAATGGCTGGGTGGATTTCAAATAACGCAAAGATGAATCTTAAAGCTGTGGATGGGAATGAAATGTTTCAGGGTCTATCCAAGTCTGCTGGTTTGGACCTCATACAGAATTGTGATCTTCCTCCACCCATGAAAGTCTTCACAGGTTCTGCAGACAAGACTGTTGTGTCATCCATGAACAGAATTTGCAGCATGATGGCCCGAGAAGATCACGAAAACAGCCACGAATTAATCGACATGTATAGAGGAGATGGCGATCAGAATTATGGGAAGCTGGAGCTCTTGAAAGCCTTGAGGCTTTCGCAAACAAGAGCGAGGGAGGCAGAGAAGAAGGCTGAGAAGTTGGCAAAGGAAAAGGAATGTCTTTCCAATGCTCTGCTCGCTGAGGCGAAAGAACTGTTTGCTTACAGGCAATGGGTGAGGTTGCTTGACCTAAAAGTTTCGAAGCTGCATTCACAATTTGCAGAACAAGAACATCAGGAATGCTGTGGCTGTGAGACTTGGATTGTAGCTTTGGCACTTTGTTTGGGCATTGCTGGTGTTGGGTTTGCATTTGGCAGCAGATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.48

Weight (kDa)

6.44

Isoelectric Point (pI)

22.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015522)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20210
malus_domestica MD01G1036700.v1.1 MD15G1317900.v1.1
prunus_persica Prupe.6G193900_v2.0.a1
pyrus_communis pycom15g28050
rosa_chinensis RchiOBHm_Chr2g0112271
rosa_laevigata RLG00000017967
rosa_multiflora Rmu_sc0004467.1_g000025 Rmu_sc0011951.1_g000003
rosa_roxburghii Rroxscaffold_2G00131570
rosa_rugosa Rorug02G0179800
rosa_samantha Rh2AG232300 Rh2BG245600 Rh2CG236500 Rh2DG240000
rosa_wichuraiana Rw2G018010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 178
AciI CCGC 1 cut(s) 9
AcsI RAATTY 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 33, 298
AluBI AGCT 5 cut(s) 59, 286, 292, 460, 524
AluI AGCT 5 cut(s) 59, 286, 292, 460, 524
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 503
AlwNI CAGNNNCTG 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 201, 460, 570
ApoI RAATTY 1 cut(s) 195
AseI ATTAAT 1 cut(s) 242
Asp700I GAANNNNTTC 2 cut(s) 78, 149
AspS9I GGNCC 2 cut(s) 109, 211
AsuHPI GGTGA 1 cut(s) 442
AsuII TTCGAA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 294
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 213, 447
BccI CCATC 3 cut(s) 59, 202, 257
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 1 cut(s) 580
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 202, 461, 571
BlsI GCNGC 3 cut(s) 203, 462, 572
Bme18I GGWCC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 109, 211
BmsI GCATC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 308
Bpu10I CCTNAGC 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 267
Bse3DI GCAATG 2 cut(s) 431, 543
Bse8I GATNNNNATC 1 cut(s) 267
BseGI GGATG 2 cut(s) 70, 182
BseJI GATNNNNATC 1 cut(s) 267
BseMI GCAATG 2 cut(s) 431, 543
BseMII CTCAG 2 cut(s) 339, 387
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 213, 447
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 503
BsmI GAATGC 2 cut(s) 463, 500
BsnI GGCC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 127, 220, 268
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 340, 388
BspMAI CTGCAG 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 431, 543
BssMI GATC 3 cut(s) 127, 220, 268
Bst4CI ACNGT 2 cut(s) 175, 411
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 348, 396
BstF5I GGATG 2 cut(s) 70, 182
BstKTI GATC 3 cut(s) 130, 223, 271
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 3 cut(s) 127, 220, 268
BstMWI GCNNNNNNNGC 3 cut(s) 17, 332, 392
BstNSI RCATGY 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 213, 447
BstV2I GAAGAC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 70, 182
Cac8I GCNNGC 1 cut(s) 393
CaiI CAGNNNCTG 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 109, 211
CviAII CATG 4 cut(s) 142, 187, 205, 250
DdeI CTNAG 2 cut(s) 348, 396
DpnI GATC 3 cut(s) 129, 222, 270
DpnII GATC 3 cut(s) 127, 220, 268
DrdI GACNNNNNNGTC 1 cut(s) 178
DseDI GACNNNNNNGTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 294
FaeI CATG 4 cut(s) 145, 190, 208, 253
FaiI YATR 7 cut(s) 116, 143, 188, 206, 251, 255, 279
FatI CATG 4 cut(s) 141, 186, 204, 249
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 202, 461, 571
FokI GGATG 2 cut(s) 77, 169
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 202, 461, 571
FspBI CTAG 1 cut(s) 580
GluI GCNGC 3 cut(s) 202, 461, 571
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 308
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 4 cut(s) 145, 190, 208, 253
HinfI GANTC 2 cut(s) 4, 49
HphI GGTGA 1 cut(s) 442
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 3 cut(s) 224, 295, 491
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 2 cut(s) 175, 411
HpyCH4V TGCA 5 cut(s) 164, 201, 463, 476, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 332, 392
HpyF3I CTNAG 2 cut(s) 348, 396
Hsp92II CATG 4 cut(s) 145, 190, 208, 253
Kzo9I GATC 3 cut(s) 127, 220, 268
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 8 cut(s) 6, 68, 87, 141, 272, 406, 476, 534
Lsp1109I GCAGC 2 cut(s) 213, 447
LweI GCATC 1 cut(s) 20
MaeI CTAG 1 cut(s) 580
MalI GATC 3 cut(s) 129, 222, 270
MboI GATC 3 cut(s) 127, 220, 268
MboII GAAGA 4 cut(s) 122, 142, 230, 352
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 5 cut(s) 121, 195, 239, 274, 470
MnlI CCTC 8 cut(s) 122, 144, 251, 300, 321, 325, 391, 426
MroXI GAANNNNTTC 2 cut(s) 78, 149
MseI TTAA 2 cut(s) 54, 242
Mva1269I GAATGC 2 cut(s) 463, 500
MwoI GCNNNNNNNGC 3 cut(s) 17, 332, 392
NdeII GATC 3 cut(s) 127, 220, 268
NlaIII CATG 4 cut(s) 145, 190, 208, 253
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 455
PciI ACATGT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 2 cut(s) 463, 500
PdmI GAANNNNTTC 2 cut(s) 78, 149
PfeI GAWTC 2 cut(s) 4, 49
PkrI GCNGC 3 cut(s) 203, 462, 572
PscI ACATGT 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 20
PspPI GGNCC 2 cut(s) 109, 211
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 2 cut(s) 54, 242
SatI GCNGC 3 cut(s) 202, 461, 571
Sau3AI GATC 3 cut(s) 127, 220, 268
Sau96I GGNCC 2 cut(s) 109, 211
SduI GDGCHC 1 cut(s) 294
SetI ASST 9 cut(s) 61, 114, 160, 288, 294, 437, 447, 462, 526
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 5 cut(s) 121, 195, 239, 274, 470
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 580
SstI GAGCTC 1 cut(s) 294
TaaI ACNGT 2 cut(s) 175, 411
TaqI TCGA 2 cut(s) 246, 455
TasI AATT 5 cut(s) 121, 195, 239, 274, 470
TfiI GAWTC 2 cut(s) 4, 49
Tru1I TTAA 2 cut(s) 54, 242
Tru9I TTAA 2 cut(s) 54, 242
TseI GCWGC 3 cut(s) 201, 460, 570
TspDTI ATGAA 5 cut(s) 17, 62, 87, 158, 203
VpaK11BI GGWCC 1 cut(s) 109
VspI ATTAAT 1 cut(s) 242
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 253
XmnI GAANNNNTTC 2 cut(s) 78, 149
XspI CTAG 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.