FvH4_1g22660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016243
Physical Location & Seq
Reverse (-)
14575158 .. 14576089
932 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22660.t1

Sequence Viewer

Length: 831 bp
ATGGCGGGAAACGCAGATGTGTGTGCGGATTTGTTGTACACGGTACAAAGGGAGGTGGAAAGTGTGGATAACATATATGTTGTAAAAGCAGCTTGTGAGAGGTATATTGAGGAGTGGAAGATGAAGGAGAGGGAGGAAAATAAAGAGGATGAGTTCAATTCCACAATTGGACTATTTAGCTGGGAAGGGCAGCAACCTGTTGGAGTATTCGTTGGATTACGTAATGTGATAGTAACTGAATTTGGGAGTGTTATGTCATGTGGTTCTGGCAGTCGCTGGGCTTTAGAATATATGAAATCACAAACTTGGAGAGATGATTTCACCAAGCTTGAAATTGCTCGGCTTCTCAGGCAATCAGTCACACTTTCTAGTCTGCATTGTCCGTCTACAGGTGGTAGGGTTTTAGTGCTAGCATTGTCTCGTAGAGGAGATAAGGAAGTTTTAGCTCAGGATAATCATGTGATAACATGTTTGGGTGACTATTATCAGCAGCACAAAGAATTCCGTTCACTTGAAATGAAAATAGATTTGAGTAAAATGGTGTTATTGGTTGTCCGGAATCTAGAGTACACTGTTGAGAATGAGAACAAAGTTAAATCTCAAATTTGTGAGCAGTTGACAGATATTCGTGATGCACATGTGATTGGAGTTGCTAAGGTGAGTCGATTTGAACGCTTTGAAGGTCGCTTTAAAGGTTGCCTTGGGAAGTTTGGGAAGGTCACAATGATGGTTTGGATTCTAGACTTCACCAATATAATCGCTGCTCACAAGGCCTGTAAGAAGCACATCCAAATACCTGATGGCAGTACATCGTACTCAGCCAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.52

Weight (kDa)

7.57

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22660
pyrus_communis pycom05g28180
rosa_chinensis RchiOBHm_Chr2g0116881
rosa_laevigata RLG00000018303
rosa_multiflora Rmu_sc0002177.1_g000017 Rmu_sc0005387.1_g000003 Rmu_sc0006730.1_g000003
rosa_roxburghii Rroxscaffold_2G00126940 Rroxscaffold_6G00390420
rosa_rugosa Rorug02G0208900
rosa_samantha Rh2AG264500 Rh2BG275700 Rh2DG271800 Rh2DG290900
rosa_wichuraiana Rw2G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 386
AccIII TCCGGA 1 cut(s) 555
AciI CCGC 2 cut(s) 5, 26
AcsI RAATTY 3 cut(s) 239, 500, 603
AfaI GTAC 5 cut(s) 38, 45, 569, 808, 815
AfiI CCNNNNNNNGG 1 cut(s) 389
AflIII ACRYGT 2 cut(s) 467, 637
AgsI TTSAA 5 cut(s) 157, 332, 515, 671, 680
AjnI CCWGG 1 cut(s) 821
AluBI AGCT 4 cut(s) 92, 180, 328, 446
AluI AGCT 4 cut(s) 92, 180, 328, 446
Alw26I GTCTC 1 cut(s) 423
AlwNI CAGNNNCTG 1 cut(s) 276
Aor13HI TCCGGA 1 cut(s) 555
AoxI GGCC 1 cut(s) 771
ApeKI GCWGC 4 cut(s) 89, 190, 490, 761
ApoI RAATTY 3 cut(s) 239, 500, 603
AsuHPI GGTGA 4 cut(s) 313, 488, 670, 739
AsuNHI GCTAGC 1 cut(s) 409
BbvI GCAGC 4 cut(s) 101, 202, 502, 748
BccI CCATC 2 cut(s) 721, 794
BciT130I CCWGG 1 cut(s) 823
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 4 cut(s) 369, 410, 563, 740
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 4 cut(s) 90, 191, 491, 762
BlsI GCNGC 4 cut(s) 91, 192, 492, 763
Bme1390I CCNGG 1 cut(s) 823
BmrFI CCNGG 1 cut(s) 823
BmsI GCATC 1 cut(s) 622
BmtI GCTAGC 1 cut(s) 413
Bpu10I CCTNAGC 2 cut(s) 447, 654
BsaAI YACGTR 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 700
BsaWI WCCGGW 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 389
BseAI TCCGGA 1 cut(s) 555
BseBI CCWGG 1 cut(s) 823
BseDI CCNNGG 1 cut(s) 700
BseGI GGATG 2 cut(s) 154, 786
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 3 cut(s) 361, 461, 831
BseRI GAGGAG 2 cut(s) 125, 441
BseXI GCAGC 4 cut(s) 101, 202, 502, 748
BseYI CCCAGC 2 cut(s) 180, 276
BshFI GGCC 1 cut(s) 773
BsiSI CCGG 1 cut(s) 556
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 423
BsnI GGCC 1 cut(s) 773
Bsp13I TCCGGA 1 cut(s) 555
Bsp1407I TGTACA 1 cut(s) 36
BspACI CCGC 2 cut(s) 5, 26
BspANI GGCC 1 cut(s) 773
BspCNI CTCAG 3 cut(s) 360, 460, 830
BspEI TCCGGA 1 cut(s) 555
BspOI GCTAGC 1 cut(s) 413
BsrGI TGTACA 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 700
Bst2UI CCWGG 1 cut(s) 823
Bst4CI ACNGT 2 cut(s) 43, 574
BstAUI TGTACA 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 4 cut(s) 347, 447, 654, 817
BstF5I GGATG 2 cut(s) 154, 786
BstMAI GTCTC 1 cut(s) 423
BstMWI GCNNNNNNNGC 3 cut(s) 11, 349, 770
BstNI CCWGG 1 cut(s) 823
BstNSI RCATGY 2 cut(s) 471, 641
BstSCI CCNGG 1 cut(s) 821
BstSFI CTRYAG 1 cut(s) 387
BstSNI TACGTA 1 cut(s) 221
BstV1I GCAGC 4 cut(s) 101, 202, 502, 748
BsuRI GGCC 1 cut(s) 773
BtsCI GGATG 2 cut(s) 154, 786
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 411
CaiI CAGNNNCTG 1 cut(s) 276
Csp6I GTAC 5 cut(s) 37, 44, 568, 807, 814
CviAII CATG 4 cut(s) 258, 458, 468, 638
CviJI RGCY 8 cut(s) 92, 180, 281, 328, 343, 446, 773, 821
CviKI_1 RGCY 8 cut(s) 92, 180, 281, 328, 343, 446, 773, 821
CviQI GTAC 5 cut(s) 37, 44, 568, 807, 814
DdeI CTNAG 4 cut(s) 347, 447, 654, 817
DraI TTTAAA 1 cut(s) 691
Eco105I TACGTA 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 700
Eco147I AGGCCT 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 821
EcoT14I CCWWGG 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 700
FaeI CATG 4 cut(s) 261, 461, 471, 641
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FatI CATG 4 cut(s) 257, 457, 467, 637
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 4 cut(s) 90, 191, 491, 762
FokI GGATG 2 cut(s) 161, 773
Fsp4HI GCNGC 4 cut(s) 90, 191, 491, 762
FspBI CTAG 4 cut(s) 369, 410, 563, 740
GluI GCNGC 4 cut(s) 90, 191, 491, 762
GsaI CCCAGC 2 cut(s) 184, 280
HaeIII GGCC 1 cut(s) 773
HapII CCGG 1 cut(s) 556
Hin1II CATG 4 cut(s) 261, 461, 471, 641
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 3 cut(s) 559, 661, 736
HpaII CCGG 1 cut(s) 556
HphI GGTGA 4 cut(s) 313, 488, 670, 739
Hpy166II GTNNAC 5 cut(s) 39, 387, 509, 570, 618
Hpy188III TCNNGA 5 cut(s) 449, 556, 563, 629, 740
Hpy8I GTNNAC 5 cut(s) 39, 387, 509, 570, 618
HpyAV CCTTC 4 cut(s) 118, 179, 674, 709
HpyCH4III ACNGT 2 cut(s) 43, 574
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 376, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 349, 770
HpyF3I CTNAG 4 cut(s) 347, 447, 654, 817
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 4 cut(s) 261, 461, 471, 641
Kpn2I TCCGGA 1 cut(s) 555
Lsp1109I GCAGC 4 cut(s) 101, 202, 502, 748
LweI GCATC 1 cut(s) 622
MaeI CTAG 4 cut(s) 369, 410, 563, 740
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 4 cut(s) 232, 358, 476, 718
MboII GAAGA 1 cut(s) 130
MfeI CAATTG 1 cut(s) 165
MluCI AATT 6 cut(s) 157, 165, 239, 333, 500, 603
MlyI GAGTC 1 cut(s) 670
MmeI TCCRAC 2 cut(s) 181, 193
MnlI CCTC 8 cut(s) 46, 93, 103, 123, 127, 139, 419, 819
MroI TCCGGA 1 cut(s) 555
MseI TTAA 2 cut(s) 594, 690
MslI CAYNNNNRTG 1 cut(s) 725
MspI CCGG 1 cut(s) 556
MspR9I CCNGG 1 cut(s) 823
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 823
MwoI GCNNNNNNNGC 3 cut(s) 11, 349, 770
NheI GCTAGC 1 cut(s) 409
NlaIII CATG 4 cut(s) 261, 461, 471, 641
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 3 cut(s) 358, 476, 718
NspI RCATGY 2 cut(s) 471, 641
PceI AGGCCT 1 cut(s) 773
PciI ACATGT 2 cut(s) 467, 637
PfeI GAWTC 2 cut(s) 559, 736
PkrI GCNGC 4 cut(s) 91, 192, 492, 763
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
Ppu21I YACGTR 1 cut(s) 221
PscI ACATGT 2 cut(s) 467, 637
Psp6I CCWGG 1 cut(s) 821
PspFI CCCAGC 2 cut(s) 180, 276
PspGI CCWGG 1 cut(s) 821
PstNI CAGNNNCTG 1 cut(s) 276
RsaI GTAC 5 cut(s) 38, 45, 569, 808, 815
RsaNI GTAC 5 cut(s) 37, 44, 568, 807, 814
RseI CAYNNNNRTG 1 cut(s) 725
SaqAI TTAA 2 cut(s) 594, 690
SatI GCNGC 4 cut(s) 90, 191, 491, 762
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 1 cut(s) 823
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 725
SnaBI TACGTA 1 cut(s) 221
Sse9I AATT 6 cut(s) 157, 165, 239, 333, 500, 603
SseBI AGGCCT 1 cut(s) 773
SsiI CCGC 2 cut(s) 5, 26
SspMI CTAG 4 cut(s) 369, 410, 563, 740
StuI AGGCCT 1 cut(s) 773
StyD4I CCNGG 1 cut(s) 821
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 2 cut(s) 43, 574
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 664
TasI AATT 6 cut(s) 157, 165, 239, 333, 500, 603
TatI WGTACW 3 cut(s) 36, 567, 806
TfiI GAWTC 2 cut(s) 559, 736
Tru1I TTAA 2 cut(s) 594, 690
Tru9I TTAA 2 cut(s) 594, 690
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 3 cut(s) 358, 476, 718
TseI GCWGC 4 cut(s) 89, 190, 490, 761
Tsp45I GTSAC 3 cut(s) 358, 476, 718
TspDTI ATGAA 3 cut(s) 137, 308, 533
TspGWI ACGGA 2 cut(s) 372, 494
TspRI CASTG 1 cut(s) 577
XapI RAATTY 3 cut(s) 239, 500, 603
XbaI TCTAGA 2 cut(s) 562, 739
XceI RCATGY 2 cut(s) 471, 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 4 cut(s) 369, 410, 563, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.