Rw2G020810

protein At4g18490 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0016243
Physical Location & Seq
Reverse (-)
28488457 .. 28491712
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020810.1

Sequence Viewer

Length: 402 bp
ATGAGATGTGGCGTCGTGACGTCGTCGTTTAGGTCTTCGGATTCGGCTGCCGTGATCTGCTTTCTGGTTCGCTCCGGGAAAATTCTTAAAGATGTCAGTGTACAAGTGAGTCCTTCCAGCTCAACTGAGAAAACAAGACTACCTAGTATTCAGAGTATAAATCCTAAGCTCAGTCTCCCAAGTGTGCAGCTACTGAGTAACTCAAAGAAAACCATCTCTACCCGGAAAGTTTCCAACTGTAGACTTCGTAGACCTTGCATGGTGAATGTCATGGAACTTGAAATTCCTTCAGCAAAGGAAACTGATGGAAATGCTGAAAAGGCTGAAGCATATACCAAGGCGTTTAAAGGACAATTCCTTTTGCGGCAAAGGTACCACAATAGTAGCTCTTATTGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.78

Weight (kDa)

10.03

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22660
pyrus_communis pycom05g28180
rosa_chinensis RchiOBHm_Chr2g0116881
rosa_laevigata RLG00000018303
rosa_multiflora Rmu_sc0002177.1_g000017 Rmu_sc0005387.1_g000003 Rmu_sc0006730.1_g000003
rosa_roxburghii Rroxscaffold_2G00126940 Rroxscaffold_6G00390420
rosa_rugosa Rorug02G0208900
rosa_samantha Rh2AG264500 Rh2BG275700 Rh2DG271800 Rh2DG290900
rosa_wichuraiana Rw2G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 23
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AccI GTMKAC 2 cut(s) 241, 250
AciI CCGC 1 cut(s) 364
AcsI RAATTY 2 cut(s) 81, 282
AcuI CTGAAG 2 cut(s) 273, 345
AcyI GRCGYC 2 cut(s) 12, 20
AfaI GTAC 2 cut(s) 102, 374
AgsI TTSAA 1 cut(s) 281
AjiI CACGTC 1 cut(s) 399
AluBI AGCT 4 cut(s) 120, 169, 190, 387
AluI AGCT 4 cut(s) 120, 169, 190, 387
Alw26I GTCTC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 193
ApeKI GCWGC 2 cut(s) 47, 187
ApoI RAATTY 2 cut(s) 81, 282
Asp718I GGTACC 1 cut(s) 372
AsuC2I CCSGG 2 cut(s) 76, 223
AsuHPI GGTGA 1 cut(s) 274
BanI GGYRCC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 34, 199
BccI CCATC 2 cut(s) 221, 299
BceAI ACGGC 1 cut(s) 35
BcnI CCSGG 2 cut(s) 76, 223
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 3 cut(s) 48, 188, 365
BlsI GCNGC 3 cut(s) 49, 189, 366
Bme1390I CCNGG 2 cut(s) 76, 223
BmgBI CACGTC 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 2 cut(s) 76, 223
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 165
BpuMI CCSGG 2 cut(s) 76, 223
BsaHI GRCGYC 2 cut(s) 12, 20
BsaJI CCNNGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 117, 184, 185
BseXI GCAGC 2 cut(s) 34, 199
BsgI GTGCAG 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 372
BsiSI CCGG 2 cut(s) 75, 223
BsmAI GTCTC 1 cut(s) 179
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 1 cut(s) 364
BspCNI CTCAG 3 cut(s) 118, 183, 186
BspLI GGNNCC 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 1 cut(s) 54
BssNI GRCGYC 2 cut(s) 12, 20
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 239
BstACI GRCGYC 2 cut(s) 12, 20
BstAUI TGTACA 1 cut(s) 100
BstDEI CTNAG 4 cut(s) 126, 165, 170, 194
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 74, 221
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 34, 199
BstV2I GAAGAC 1 cut(s) 27
BtrI CACGTC 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 103
CaiI CAGNNNCTG 1 cut(s) 193
Csp6I GTAC 2 cut(s) 101, 373
CviAII CATG 2 cut(s) 259, 271
CviJI RGCY 6 cut(s) 47, 120, 169, 190, 323, 387
CviKI_1 RGCY 6 cut(s) 47, 120, 169, 190, 323, 387
CviQI GTAC 2 cut(s) 101, 373
DdeI CTNAG 4 cut(s) 126, 165, 170, 194
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
DraI TTTAAA 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 336
Eco57I CTGAAG 2 cut(s) 273, 345
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 2 cut(s) 262, 274
FaiI YATR 5 cut(s) 158, 260, 272, 331, 333
FatI CATG 2 cut(s) 258, 270
FblI GTMKAC 2 cut(s) 241, 250
Fnu4HI GCNGC 3 cut(s) 48, 188, 365
Fsp4HI GCNGC 3 cut(s) 48, 188, 365
FspBI CTAG 1 cut(s) 144
GluI GCNGC 3 cut(s) 48, 188, 365
HapII CCGG 2 cut(s) 75, 223
Hin1I GRCGYC 2 cut(s) 12, 20
Hin1II CATG 2 cut(s) 262, 274
HinfI GANTC 2 cut(s) 41, 109
HpaII CCGG 2 cut(s) 75, 223
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 3 cut(s) 101, 242, 251
Hpy188I TCNGA 2 cut(s) 40, 153
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 3 cut(s) 101, 242, 251
Hpy99I CGWCG 3 cut(s) 17, 25, 28
HpyAV CCTTC 2 cut(s) 123, 297
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 2 cut(s) 20, 398
HpyCH4V TGCA 2 cut(s) 187, 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 4 cut(s) 126, 165, 170, 194
HpySE526I ACGT 2 cut(s) 20, 398
Hsp92I GRCGYC 2 cut(s) 12, 20
Hsp92II CATG 2 cut(s) 262, 274
KpnI GGTACC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 4 cut(s) 50, 88, 130, 236
Lsp1109I GCAGC 2 cut(s) 34, 199
MaeI CTAG 1 cut(s) 144
MaeII ACGT 2 cut(s) 20, 398
MaeIII GTNAC 2 cut(s) 16, 197
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 27
MluCI AATT 3 cut(s) 81, 282, 353
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 258
MseI TTAA 2 cut(s) 87, 345
MspI CCGG 2 cut(s) 75, 223
MspR9I CCNGG 2 cut(s) 76, 223
MwoI GCNNNNNNNGC 1 cut(s) 320
NciI CCSGG 2 cut(s) 76, 223
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 262, 274
NlaIV GGNNCC 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 41
PflFI GACNNNGTC 1 cut(s) 22
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 3 cut(s) 49, 189, 366
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 22
RsaI GTAC 2 cut(s) 102, 374
RsaNI GTAC 2 cut(s) 101, 373
SaqAI TTAA 2 cut(s) 87, 345
SatI GCNGC 3 cut(s) 48, 188, 365
Sau3AI GATC 1 cut(s) 54
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 76, 223
SfcI CTRYAG 1 cut(s) 238
Sse9I AATT 3 cut(s) 81, 282, 353
SsiI CCGC 1 cut(s) 364
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 74, 221
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 2 cut(s) 23, 401
TasI AATT 3 cut(s) 81, 282, 353
TatI WGTACW 1 cut(s) 100
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 87, 345
Tru9I TTAA 2 cut(s) 87, 345
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 47, 187
Tsp45I GTSAC 1 cut(s) 16
TspRI CASTG 1 cut(s) 103
Tth111I GACNNNGTC 1 cut(s) 22
XapI RAATTY 2 cut(s) 81, 282
XmiI GTMKAC 2 cut(s) 241, 250
XspI CTAG 1 cut(s) 144
ZraI GACGTC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.