Rorug02G0208900

protein At4g18490 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001539
Physical Location & Seq
Reverse (-)
19592922 .. 19598087
5166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0208900.1

Sequence Viewer

Length: 1119 bp
ATGTCTCCACCACTGCTGGGTGGTGAGGGGGAAGGGAAGAGCAATGGATCGATGGTAGCTTGTTCTCCCTCTATGGACATGACCCCTCAGAACAGCTCAGGACTGAAAGAGCGTAACTACCTTGGGTTGTCAGATTGTTCTTCAGTTGACAGCTCCACAGTCTCAAGCTTGTCAGAGGAGAATAAGAGCAAGTTCAATTTTAAGGCTACAGAGTTGAGGCTGGGTCTTCCTGGATCCCAATCACCAGAACGACAATCAGAGCTTTGCTTGCTTGATGAGAAGCCACTGTTTCCTTTGCTTCCTTCAAAAGATGGAATATGTTCCTCATCCCAGAAAAATGTTGTTTCAGGCAACAAAAGAGGCTTTTCTGATACCATGGACGGATTCTCAGAGGTGAAAAGTTCTGTATATAATGAAGGAAATTGGATGTTTCCTGCAGCTGGTTCTGATTCTGAATCACCAGAATCTGTCGGACAAGGTAAGTTTCCTGTGAGTTCAATCAATGTGATGCTCTCATCCAGGACTTCTGGGACTCAGCCAACCAAGATGAAAGATATTATGACCAAATCTTCAAAAGATCAGTCAAATGCTACAAATGGAGCTGGCCAGAACCATGTGGGTGCTTCTAACAACAACAGTGCCCCAGCTGCTAAGGCACAAGTTGTAGGGTGGCCTCCAATAAGATCTTTTAGGAAGAATTTAACCACCGCTTCAAAGAACAATGATGAAGTTGATGGAAAACCTGGTCGAGGTGCTCTTTTTGTCAAGGTCAGCATGGATGGTGCTCCCTACCTGAGGAAGGTAGATCTGAGAACCTACTCAACATATCAAGAGTTGTCTTCTGCTCTGGAAAAGATGTTCAGCTGTTTTACCATCGGGCAATATGGATCCCATGGAGCTCCAGGGAGGGAAAGATTGAGTGAGAGTAAGCTGAGAGACCTTCTTCATGGATCAGAATATGTGCTTACATATGAGGACAAGGATGGTGATTGGATGCTTGTCGGAGATGTCCCATGGGAGATGTTTATTGATTCATGCAAGAGGTTGAAGATAATGAAGGGCTCTGATGCCATTGGCTTAGCTCCTAGGTCCATGGAGAAATCCAAGAACCGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

40.18

Weight (kDa)

8.09

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 69 - 363 1.5e-90 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 708
AclWI GGATC 6 cut(s) 55, 228, 241, 882, 895, 958
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 6 cut(s) 17, 440, 749, 795, 799, 1110
AgsI TTSAA 6 cut(s) 196, 306, 498, 573, 714, 1048
AjnI CCWGG 4 cut(s) 229, 518, 742, 901
AloI GAACNNNNNNTCC 2 cut(s) 842, 874
Alw21I GWGCWC 3 cut(s) 757, 787, 901
Alw26I GTCTC 3 cut(s) 9, 166, 930
AlwI GGATC 6 cut(s) 55, 228, 241, 882, 895, 958
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 2 cut(s) 604, 671
ApeKI GCWGC 2 cut(s) 437, 647
ApoI RAATTY 1 cut(s) 697
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
Asp700I GAANNNNTTC 1 cut(s) 319
AspA2I CCTAGG 1 cut(s) 1085
AspS9I GGNCC 2 cut(s) 1089, 1113
AsuHPI GGTGA 5 cut(s) 35, 234, 406, 450, 998
AvaII GGWCC 2 cut(s) 1089, 1113
AvrII CCTAGG 1 cut(s) 1085
AxyI CCTNAGG 1 cut(s) 794
BaeGI GKGCMC 1 cut(s) 643
BalI TGGCCA 1 cut(s) 606
BamHI GGATCC 2 cut(s) 233, 887
BanII GRGCYC 2 cut(s) 901, 1064
BbsI GAAGAC 2 cut(s) 218, 831
Bbv12I GWGCWC 3 cut(s) 757, 787, 901
BbvI GCAGC 2 cut(s) 449, 634
BccI CCATC 6 cut(s) 46, 305, 728, 773, 881, 977
BciT130I CCWGG 4 cut(s) 231, 520, 744, 903
BcoDI GTCTC 3 cut(s) 9, 166, 930
BfaI CTAG 2 cut(s) 1086, 1117
BfmI CTRYAG 2 cut(s) 207, 435
BglII AGATCT 2 cut(s) 683, 805
BisI GCNGC 2 cut(s) 438, 648
BlnI CCTAGG 1 cut(s) 1085
BlpI GCTNAGC 1 cut(s) 1078
BlsI GCNGC 2 cut(s) 439, 649
Bme1390I CCNGG 4 cut(s) 231, 520, 744, 903
Bme18I GGWCC 2 cut(s) 1089, 1113
BmgT120I GGNCC 2 cut(s) 1089, 1113
BmiI GGNNCC 2 cut(s) 235, 889
BmrFI CCNGG 4 cut(s) 231, 520, 744, 903
BmsI GCATC 3 cut(s) 498, 984, 1057
BpiI GAAGAC 2 cut(s) 218, 831
BpmI CTGGAG 1 cut(s) 885
Bpu10I CCTNAGC 2 cut(s) 97, 651
Bpu1102I GCTNAGC 1 cut(s) 1078
BpuEI CTTGAG 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 930
BsaJI CCNNGG 7 cut(s) 121, 375, 892, 902, 1013, 1085, 1092
BsaWI WCCGGW 1 cut(s) 1110
Bsc4I CCNNNNNNNGG 6 cut(s) 17, 440, 749, 795, 799, 1110
Bse21I CCTNAGG 1 cut(s) 794
Bse3DI GCAATG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 238
BseBI CCWGG 4 cut(s) 231, 520, 744, 903
BseCI ATCGAT 1 cut(s) 50
BseDI CCNNGG 7 cut(s) 121, 375, 892, 902, 1013, 1085, 1092
BseGI GGATG 6 cut(s) 326, 432, 515, 784, 988, 999
BseJI GATNNNNATC 1 cut(s) 238
BseLI CCNNNNNNNGG 6 cut(s) 17, 440, 749, 795, 799, 1110
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 7 cut(s) 101, 111, 402, 548, 785, 800, 923
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 2 cut(s) 449, 634
BseYI CCCAGC 3 cut(s) 16, 220, 643
BshFI GGCC 2 cut(s) 606, 673
BshVI ATCGAT 1 cut(s) 50
BsiHKAI GWGCWC 3 cut(s) 757, 787, 901
BsiSI CCGG 1 cut(s) 1111
BslFI GGGAC 2 cut(s) 544, 995
BslI CCNNNNNNNGG 6 cut(s) 17, 440, 749, 795, 799, 1110
BsmAI GTCTC 3 cut(s) 9, 166, 930
BsmFI GGGAC 2 cut(s) 544, 995
BsnI GGCC 2 cut(s) 606, 673
Bso31I GGTCTC 1 cut(s) 930
Bsp1286I GDGCHC 5 cut(s) 643, 757, 787, 901, 1064
Bsp143I GATC 7 cut(s) 47, 233, 577, 683, 805, 887, 950
Bsp1720I GCTNAGC 1 cut(s) 1078
Bsp19I CCATGG 4 cut(s) 375, 892, 1013, 1092
BspACI CCGC 1 cut(s) 708
BspANI GGCC 2 cut(s) 606, 673
BspCNI CTCAG 7 cut(s) 100, 110, 401, 547, 786, 801, 924
BspDI ATCGAT 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 235, 889
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 6 cut(s) 55, 228, 241, 882, 895, 958
BspQI GCTCTTC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 930
BsrDI GCAATG 1 cut(s) 49
BssECI CCNNGG 7 cut(s) 121, 375, 892, 902, 1013, 1085, 1092
BssMI GATC 7 cut(s) 47, 233, 577, 683, 805, 887, 950
BssT1I CCWWGG 6 cut(s) 121, 375, 892, 1013, 1085, 1092
Bst2UI CCWGG 4 cut(s) 231, 520, 744, 903
Bst4CI ACNGT 3 cut(s) 160, 288, 638
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 269, 604
BstDEI CTNAG 9 cut(s) 87, 97, 388, 534, 651, 794, 809, 932, 1078
BstDSI CCRYGG 4 cut(s) 375, 892, 1013, 1092
BstENI CCTNNNNNAGG 3 cut(s) 747, 793, 797
BstF5I GGATG 6 cut(s) 326, 432, 515, 784, 988, 999
BstKTI GATC 7 cut(s) 50, 236, 580, 686, 808, 890, 953
BstMAI GTCTC 3 cut(s) 9, 166, 930
BstMBI GATC 7 cut(s) 47, 233, 577, 683, 805, 887, 950
BstMWI GCNNNNNNNGC 3 cut(s) 268, 647, 653
BstNI CCWGG 4 cut(s) 231, 520, 744, 903
BstSCI CCNGG 4 cut(s) 229, 518, 742, 901
BstSFI CTRYAG 2 cut(s) 207, 435
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 2 cut(s) 449, 634
BstV2I GAAGAC 2 cut(s) 218, 831
BstX2I RGATCY 4 cut(s) 233, 683, 805, 887
BstYI RGATCY 4 cut(s) 233, 683, 805, 887
Bsu15I ATCGAT 1 cut(s) 50
Bsu36I CCTNAGG 1 cut(s) 794
BsuRI GGCC 2 cut(s) 606, 673
BsuTUI ATCGAT 1 cut(s) 50
BtgI CCRYGG 4 cut(s) 375, 892, 1013, 1092
BtsCI GGATG 6 cut(s) 326, 432, 515, 784, 988, 999
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 3 cut(s) 11, 284, 643
Cac8I GCNNGC 2 cut(s) 269, 604
CaiI CAGNNNCTG 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 1089, 1113
ClaI ATCGAT 1 cut(s) 50
CsiI ACCWGGT 1 cut(s) 742
CviAII CATG 9 cut(s) 79, 376, 614, 775, 893, 947, 1014, 1035, 1093
DdeI CTNAG 9 cut(s) 87, 97, 388, 534, 651, 794, 809, 932, 1078
DpnI GATC 7 cut(s) 49, 235, 579, 685, 807, 889, 952
DpnII GATC 7 cut(s) 47, 233, 577, 683, 805, 887, 950
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 899
Eco130I CCWWGG 6 cut(s) 121, 375, 892, 1013, 1085, 1092
Eco24I GRGCYC 2 cut(s) 901, 1064
Eco31I GGTCTC 1 cut(s) 930
Eco47I GGWCC 2 cut(s) 1089, 1113
Eco53kI GAGCTC 1 cut(s) 899
Eco57I CTGAAG 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 794
EcoICRI GAGCTC 1 cut(s) 899
EcoNI CCTNNNNNAGG 3 cut(s) 747, 793, 797
EcoRII CCWGG 4 cut(s) 229, 518, 742, 901
EcoT14I CCWWGG 6 cut(s) 121, 375, 892, 1013, 1085, 1092
EcoT38I GRGCYC 2 cut(s) 901, 1064
ErhI CCWWGG 6 cut(s) 121, 375, 892, 1013, 1085, 1092
FaeI CATG 9 cut(s) 82, 379, 617, 778, 896, 950, 1017, 1038, 1096
FaqI GGGAC 2 cut(s) 544, 995
FatI CATG 9 cut(s) 78, 375, 613, 774, 892, 946, 1013, 1034, 1092
FauNDI CATATG 1 cut(s) 970
Fnu4HI GCNGC 2 cut(s) 438, 648
FokI GGATG 6 cut(s) 313, 439, 502, 791, 995, 1006
FriOI GRGCYC 2 cut(s) 901, 1064
Fsp4HI GCNGC 2 cut(s) 438, 648
FspBI CTAG 2 cut(s) 1086, 1117
GluI GCNGC 2 cut(s) 438, 648
GsaI CCCAGC 3 cut(s) 20, 224, 647
GsuI CTGGAG 1 cut(s) 885
HaeIII GGCC 2 cut(s) 606, 673
HapII CCGG 1 cut(s) 1111
Hin1II CATG 9 cut(s) 82, 379, 617, 778, 896, 950, 1017, 1038, 1096
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 6 cut(s) 384, 449, 455, 464, 532, 1031
HpaII CCGG 1 cut(s) 1111
HphI GGTGA 5 cut(s) 35, 234, 406, 450, 998
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 99, 830, 848
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 6 cut(s) 26, 312, 410, 793, 950, 1051
HpyCH4III ACNGT 3 cut(s) 160, 288, 638
HpyCH4V TGCA 2 cut(s) 437, 1038
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 647, 653
HpyF3I CTNAG 9 cut(s) 87, 97, 388, 534, 651, 794, 809, 932, 1078
Hsp92II CATG 9 cut(s) 82, 379, 617, 778, 896, 950, 1017, 1038, 1096
Kzo9I GATC 7 cut(s) 47, 233, 577, 683, 805, 887, 950
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 6 cut(s) 158, 599, 790, 896, 904, 1087
Lsp1109I GCAGC 2 cut(s) 449, 634
LweI GCATC 3 cut(s) 498, 984, 1057
MabI ACCWGGT 1 cut(s) 742
MaeI CTAG 2 cut(s) 1086, 1117
MaeIII GTNAC 1 cut(s) 113
MalI GATC 7 cut(s) 49, 235, 579, 685, 807, 889, 952
MboI GATC 7 cut(s) 47, 233, 577, 683, 805, 887, 950
MboII GAAGA 8 cut(s) 49, 132, 218, 561, 706, 831, 935, 1060
MflI RGATCY 4 cut(s) 233, 683, 805, 887
MhlI GDGCHC 5 cut(s) 643, 757, 787, 901, 1064
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 3 cut(s) 196, 421, 697
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 2 cut(s) 451, 982
Mox20I TGGCCA 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 319
MscI TGGCCA 1 cut(s) 606
MseI TTAA 2 cut(s) 201, 701
MslI CAYNNNNRTG 1 cut(s) 618
Msp20I TGGCCA 1 cut(s) 606
MspA1I CMGCKG 3 cut(s) 440, 647, 864
MspI CCGG 1 cut(s) 1111
MspR9I CCNGG 4 cut(s) 231, 520, 744, 903
MvaI CCWGG 4 cut(s) 231, 520, 744, 903
MwoI GCNNNNNNNGC 3 cut(s) 268, 647, 653
NcoI CCATGG 4 cut(s) 375, 892, 1013, 1092
NdeI CATATG 1 cut(s) 970
NdeII GATC 7 cut(s) 47, 233, 577, 683, 805, 887, 950
NlaIII CATG 9 cut(s) 82, 379, 617, 778, 896, 950, 1017, 1038, 1096
NlaIV GGNNCC 2 cut(s) 235, 889
PciSI GCTCTTC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 5 cut(s) 384, 449, 455, 464, 1031
PfoI TCCNGGA 2 cut(s) 229, 518
PkrI GCNGC 2 cut(s) 439, 649
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Psp124BI GAGCTC 1 cut(s) 901
Psp6I CCWGG 4 cut(s) 229, 518, 742, 901
PspFI CCCAGC 3 cut(s) 16, 220, 643
PspGI CCWGG 4 cut(s) 229, 518, 742, 901
PspN4I GGNNCC 2 cut(s) 235, 889
PspPI GGNCC 2 cut(s) 1089, 1113
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 4 cut(s) 233, 683, 805, 887
PvuII CAGCTG 3 cut(s) 440, 647, 864
RseI CAYNNNNRTG 1 cut(s) 618
SacI GAGCTC 1 cut(s) 901
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 201, 701
SatI GCNGC 2 cut(s) 438, 648
Sau3AI GATC 7 cut(s) 47, 233, 577, 683, 805, 887, 950
Sau96I GGNCC 2 cut(s) 1089, 1113
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 4 cut(s) 231, 520, 744, 903
SduI GDGCHC 5 cut(s) 643, 757, 787, 901, 1064
SexAI ACCWGGT 1 cut(s) 742
SfaNI GCATC 3 cut(s) 498, 984, 1057
SfcI CTRYAG 2 cut(s) 207, 435
SinI GGWCC 2 cut(s) 1089, 1113
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 3 cut(s) 196, 421, 697
SsiI CCGC 1 cut(s) 708
SspMI CTAG 2 cut(s) 1086, 1117
SstI GAGCTC 1 cut(s) 901
StyD4I CCNGG 4 cut(s) 229, 518, 742, 901
StyI CCWWGG 6 cut(s) 121, 375, 892, 1013, 1085, 1092
TaaI ACNGT 3 cut(s) 160, 288, 638
TaqI TCGA 2 cut(s) 50, 748
TasI AATT 3 cut(s) 196, 421, 697
TfiI GAWTC 5 cut(s) 384, 449, 455, 464, 1031
Tru1I TTAA 2 cut(s) 201, 701
Tru9I TTAA 2 cut(s) 201, 701
TscAI CASTG 3 cut(s) 18, 291, 643
TseI GCWGC 2 cut(s) 437, 647
TspDTI ATGAA 6 cut(s) 429, 563, 741, 935, 1023, 1070
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 3 cut(s) 18, 291, 643
VpaK11BI GGWCC 2 cut(s) 1089, 1113
XagI CCTNNNNNAGG 3 cut(s) 747, 793, 797
XapI RAATTY 1 cut(s) 697
XmaJI CCTAGG 1 cut(s) 1085
XmnI GAANNNNTTC 1 cut(s) 319
XspI CTAG 2 cut(s) 1086, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.