Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

74546 .. 75307

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTGGAGGTTACAAGTTGTTGCTTTTGCAGATTAGTTGTAGTATTCACGATTCTTTACATTTTACACCAGTCCTCAGTTGCTGAGAGTTCATTGGTTTACGACGTTCGAGGTTTTGGAGCTAAACCTAATGGTGTAACGGATTCCACACAAGCGTTTCTCAATGCATGGGGAGCAGCATGTGCCTTCAACGATTCCCACTACGATAAGTGTGACAAATGCAAAAACAGTCGCATTACTTTCCGGGTCGATGGAACATTGATGGCTTCCTCTGATTACCCAGTCCTAGGCCGAGATAGCAACTGGCTCAGTTTTGTTCGAGTGACAGGCATCTCCATCGTGGAAGGCACACTTGATGCCCAAGGTACCTCTTTGTGGGCTTGCAAGTTAGCTGGAGGAAGCACCGACTGCCCCAACGGAGCCACGGTTAAATCAATCGGACTAATGCTGGTCCAACTTATAATTCGCTATTGTTTGCGGTTGGATCGCACGTCATTGAACAGCCAGATATTCCACATTGTGATAAACGGGTGCCAAGATGTTGAGATTGAAGGCGTCACGGTGAATGCCGCCGGAAATAGCCCCAACACTGATGGCATCCATCAAAACTGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

206

Amino Acids

22.17

Weight (kDa)

5.74

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	76 - 201	9.5e-12	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	2 cut(s)	365, 531
AciI	CCGC	2 cut(s)	478, 570
AclWI	GGATC	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	287, 375
AgsI	TTSAA	3 cut(s)	190, 499, 551
AjiI	CACGTC	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	447, 479
AluBI	AGCT	2 cut(s)	122, 392
AluI	AGCT	2 cut(s)	122, 392
AlwI	GGATC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	365
AspA2I	CCTAGG	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	451
AvrII	CCTAGG	1 cut(s)	286
BanI	GGYRCC	2 cut(s)	365, 531
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	5 cut(s)	245, 256, 344, 587, 609
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BcnI	CCSGG	1 cut(s)	245
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	2 cut(s)	177, 570
BlnI	CCTAGG	1 cut(s)	286
BlsI	GCNGC	2 cut(s)	178, 571
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	451
BmgBI	CACGTC	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	3 cut(s)	367, 421, 533
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	3 cut(s)	339, 346, 606
BmuI	ACTGGG	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	3 cut(s)	286, 361, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 375
Bse1I	ACTGG	4 cut(s)	70, 281, 308, 614
BseDI	CCNNGG	3 cut(s)	286, 361, 423
BseGI	GGATG	1 cut(s)	597
BseLI	CCNNNNNNNGG	2 cut(s)	287, 375
BseMII	CTCAG	3 cut(s)	75, 90, 322
BseNI	ACTGG	4 cut(s)	70, 281, 308, 614
BseXI	GCAGC	1 cut(s)	188
BshFI	GGCC	1 cut(s)	291
BshNI	GGYRCC	2 cut(s)	365, 531
BsiSI	CCGG	2 cut(s)	244, 573
BslI	CCNNNNNNNGG	2 cut(s)	287, 375
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	484
BspACI	CCGC	2 cut(s)	478, 570
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	3 cut(s)	76, 89, 321
BspLI	GGNNCC	3 cut(s)	367, 421, 533
BspPI	GGATC	1 cut(s)	492
BspT107I	GGYRCC	2 cut(s)	365, 531
BsrI	ACTGG	4 cut(s)	70, 281, 308, 614
BssECI	CCNNGG	3 cut(s)	286, 361, 423
BssMI	GATC	1 cut(s)	484
BssNI	GRCGYC	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	286, 361
Bst4CI	ACNGT	3 cut(s)	230, 427, 562
BstACI	GRCGYC	1 cut(s)	555
BstAPI	GCANNNNNTGC	2 cut(s)	182, 408
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	76, 84, 308
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	597
BstKTI	GATC	1 cut(s)	487
BstMBI	GATC	1 cut(s)	484
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 182, 297, 408
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	291
BtgI	CCRYGG	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	597
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	451
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	2 cut(s)	168, 180
CviJI	RGCY	9 cut(s)	122, 266, 291, 307, 380, 392, 422, 504, 582
CviKI_1	RGCY	9 cut(s)	122, 266, 291, 307, 380, 392, 422, 504, 582
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	3 cut(s)	76, 84, 308
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
DraIII	CACNNNGTG	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	286, 361
Eco47I	GGWCC	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	286, 361
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	286, 361
FaeI	CATG	2 cut(s)	171, 183
FaiI	YATR	3 cut(s)	169, 181, 461
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	2 cut(s)	167, 179
Fnu4HI	GCNGC	2 cut(s)	177, 570
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	2 cut(s)	177, 570
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	2 cut(s)	177, 570
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	2 cut(s)	244, 573
HgaI	GACGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	2 cut(s)	171, 183
HinfI	GANTC	3 cut(s)	52, 143, 194
HpaII	CCGG	2 cut(s)	244, 573
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	274, 440
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	196, 338, 545
HpyCH4III	ACNGT	3 cut(s)	230, 427, 562
HpyCH4IV	ACGT	2 cut(s)	105, 491
HpyCH4V	TGCA	4 cut(s)	30, 167, 222, 384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 182, 297, 408
HpyF3I	CTNAG	3 cut(s)	76, 84, 308
HpySE526I	ACGT	2 cut(s)	105, 491
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	171, 183
KpnI	GGTACC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	484
LmnI	GCTCC	3 cut(s)	119, 173, 419
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	3 cut(s)	339, 346, 606
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	2 cut(s)	105, 491
MaeIII	GTNAC	5 cut(s)	10, 136, 212, 322, 556
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MluCI	AATT	1 cut(s)	462
MmeI	TCCRAC	2 cut(s)	462, 478
MnlI	CCTC	5 cut(s)	85, 104, 280, 379, 389
Mph1103I	ATGCAT	1 cut(s)	169
MseI	TTAA	1 cut(s)	429
MspI	CCGG	2 cut(s)	244, 573
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	571
MwoI	GCNNNNNNNGC	4 cut(s)	173, 182, 297, 408
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	2 cut(s)	171, 183
NlaIV	GGNNCC	3 cut(s)	367, 421, 533
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	3 cut(s)	212, 322, 556
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	183
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	52, 143, 194
PkrI	GCNGC	2 cut(s)	178, 571
PsiI	TTATAA	1 cut(s)	461
PspN4I	GGNNCC	3 cut(s)	367, 421, 533
PspPI	GGNCC	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	2 cut(s)	177, 570
Sau3AI	GATC	1 cut(s)	484
Sau96I	GGNCC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	9 cut(s)	12, 108, 115, 124, 130, 367, 371, 394, 494
SfaNI	GCATC	3 cut(s)	339, 346, 606
SinI	GGWCC	1 cut(s)	451
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	2 cut(s)	478, 570
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	286, 361
TaaI	ACNGT	3 cut(s)	230, 427, 562
TaiI	ACGT	2 cut(s)	108, 494
TaqI	TCGA	3 cut(s)	109, 249, 319
TasI	AATT	1 cut(s)	462
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	3 cut(s)	52, 143, 194
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	3 cut(s)	212, 322, 556
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	3 cut(s)	212, 322, 556
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	2 cut(s)	155, 432
TspRI	CASTG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	451
XceI	RCATGY	1 cut(s)	183
XmaJI	CCTAGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.