Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000238.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

123948 .. 125619

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000238.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggtgcagcatacacattgttcttacgcagctgtattgcttgttctacatattttataccagtcgtctgcttctgctgctgatgagaccacaagttcacaactgtttagctttggagctaaacgcaatggcaaagccaagggttctgcgttgtgggcttgcaaattgagcaccaaagcctccaattgtcctgatggcgccacgggtttgagttttacgaactccaaaaacattagagtcgaggggctaatgtcattgaacagccagatgtaccacattgtcataaacggctgccaagacgttctcattcaaggcgtcaaagtcattgctgctggcaatagcccaaacagcgatggcatccatgtccagttctcgaagttcattgggagcctagccaaggacttggaagaggaaggggtacaaaatgtaacggtcaaaaatgcgatttttaagggcacccagaatggtgtgaggataaaatcttgggcgagacgtagcaacgggtttgtccaaggtgtccaatttcttgacgttgaaatgattgatgtccaaaaccctattgtaattgaccaaaattactgcccacacaaccttaactgccctgctcatgaggtatcaggcgtgaaaattagtgatgtattgtatcaaaacattagaggaacatcagcaacagcgccacagcggttgcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

230

Amino Acids

24.85

Weight (kDa)

8.73

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 455
AciI	CCGC	1 cut(s)	682
AcyI	GRCGYC	2 cut(s)	198, 315
AfaI	GTAC	2 cut(s)	272, 420
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	259, 311, 536
AluBI	AGCT	3 cut(s)	32, 111, 119
AluI	AGCT	3 cut(s)	32, 111, 119
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	80, 484
ApeKI	GCWGC	5 cut(s)	7, 29, 77, 291, 329
AspLEI	GCGC	2 cut(s)	200, 676
BaeGI	GKGCMC	1 cut(s)	458
BanI	GGYRCC	2 cut(s)	197, 455
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	5 cut(s)	19, 41, 64, 278, 316
BccI	CCATC	2 cut(s)	188, 347
BceAI	ACGGC	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	80, 484
BfaI	CTAG	1 cut(s)	392
BfoI	RGCGCY	2 cut(s)	201, 677
BisI	GCNGC	5 cut(s)	8, 30, 78, 292, 330
BlsI	GCNGC	5 cut(s)	9, 31, 79, 293, 331
BmiI	GGNNCC	3 cut(s)	199, 389, 457
BmsI	GCATC	1 cut(s)	366
BsaHI	GRCGYC	2 cut(s)	198, 315
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	138, 201, 396, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse1I	ACTGG	2 cut(s)	61, 367
Bse3DI	GCAATG	2 cut(s)	133, 324
BseDI	CCNNGG	4 cut(s)	138, 201, 396, 511
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	2 cut(s)	133, 324
BseNI	ACTGG	2 cut(s)	61, 367
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	5 cut(s)	19, 41, 64, 278, 316
BsgI	GTGCAG	1 cut(s)	26
BshNI	GGYRCC	2 cut(s)	197, 455
BsiHKAI	GWGCWC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	2 cut(s)	80, 484
BsmBI	CGTCTC	1 cut(s)	484
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	173, 458
BspACI	CCGC	1 cut(s)	682
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	3 cut(s)	199, 389, 457
BspT107I	GGYRCC	2 cut(s)	197, 455
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	133, 324
BsrI	ACTGG	2 cut(s)	61, 367
BssECI	CCNNGG	4 cut(s)	138, 201, 396, 511
BssNI	GRCGYC	2 cut(s)	198, 315
BssT1I	CCWWGG	3 cut(s)	138, 396, 511
Bst4CI	ACNGT	2 cut(s)	105, 433
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	2 cut(s)	198, 315
BstC8I	GCNNGC	2 cut(s)	160, 334
BstDSI	CCRYGG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	357
BstH2I	RGCGCY	2 cut(s)	201, 677
BstHHI	GCGC	2 cut(s)	200, 676
BstMAI	GTCTC	2 cut(s)	80, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 155, 168, 348
BstSLI	GKGCMC	1 cut(s)	458
BstV1I	GCAGC	5 cut(s)	19, 41, 64, 278, 316
BstXI	CCANNNNNNTGG	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	160, 334
CciI	TCATGA	1 cut(s)	607
CfoI	GCGC	2 cut(s)	200, 676
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	271, 419
CspCI	CAANNNNNGTGG	1 cut(s)	666
CviAII	CATG	2 cut(s)	362, 608
CviQI	GTAC	2 cut(s)	271, 419
DinI	GGCGCC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	3 cut(s)	138, 396, 511
Eco31I	GGTCTC	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoT14I	CCWWGG	3 cut(s)	138, 396, 511
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	3 cut(s)	138, 396, 511
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	2 cut(s)	365, 611
FaiI	YATR	6 cut(s)	12, 51, 58, 284, 363, 609
FatI	CATG	2 cut(s)	361, 607
Fnu4HI	GCNGC	5 cut(s)	8, 30, 78, 292, 330
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	5 cut(s)	8, 30, 78, 292, 330
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	2 cut(s)	199, 675
GluI	GCNGC	5 cut(s)	8, 30, 78, 292, 330
HaeII	RGCGCY	2 cut(s)	201, 677
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	2 cut(s)	200, 676
Hin1I	GRCGYC	2 cut(s)	198, 315
Hin1II	CATG	2 cut(s)	365, 611
Hin6I	GCGC	2 cut(s)	198, 674
HinP1I	GCGC	2 cut(s)	198, 674
HinfI	GANTC	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188III	TCNNGA	4 cut(s)	191, 373, 527, 608
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	2 cut(s)	105, 433
HpyCH4IV	ACGT	3 cut(s)	300, 493, 531
HpyCH4V	TGCA	3 cut(s)	7, 162, 688
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 155, 168, 348
HpySE526I	ACGT	3 cut(s)	300, 493, 531
Hsp92I	GRCGYC	2 cut(s)	198, 315
Hsp92II	CATG	2 cut(s)	365, 611
HspAI	GCGC	2 cut(s)	198, 674
KasI	GGCGCC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	116, 387
LpnPI	CCDG	8 cut(s)	74, 204, 278, 318, 380, 473, 603, 615
Lsp1109I	GCAGC	5 cut(s)	19, 41, 64, 278, 316
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	3 cut(s)	300, 493, 531
MaeIII	GTNAC	1 cut(s)	427
MboII	GAAGA	1 cut(s)	419
MfeI	CAATTG	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	173, 458
MluCI	AATT	6 cut(s)	164, 184, 521, 564, 574, 627
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	190, 235, 403, 465, 604, 650
MseI	TTAA	2 cut(s)	450, 594
MspA1I	CMGCKG	2 cut(s)	32, 682
MunI	CAATTG	1 cut(s)	184
MwoI	GCNNNNNNNGC	4 cut(s)	77, 155, 168, 348
NarI	GGCGCC	1 cut(s)	198
NlaIII	CATG	2 cut(s)	365, 611
NlaIV	GGNNCC	3 cut(s)	199, 389, 457
PagI	TCATGA	1 cut(s)	607
PkrI	GCNGC	5 cut(s)	9, 31, 79, 293, 331
PleI	GAGTC	1 cut(s)	245
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	245
PspN4I	GGNNCC	3 cut(s)	199, 389, 457
PsrI	GAACNNNNNNTAC	2 cut(s)	27, 59
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	2 cut(s)	272, 420
RsaNI	GTAC	2 cut(s)	271, 419
SaqAI	TTAA	2 cut(s)	450, 594
SatI	GCNGC	5 cut(s)	8, 30, 78, 292, 330
SchI	GAGTC	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	173, 458
SetI	ASST	9 cut(s)	34, 113, 121, 303, 496, 517, 534, 594, 615
SfaNI	GCATC	1 cut(s)	366
SfoI	GGCGCC	1 cut(s)	199
Sse9I	AATT	6 cut(s)	164, 184, 521, 564, 574, 627
SsiI	CCGC	1 cut(s)	682
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	392
StyI	CCWWGG	3 cut(s)	138, 396, 511
TaaI	ACNGT	2 cut(s)	105, 433
TaiI	ACGT	3 cut(s)	303, 496, 534
TaqI	TCGA	2 cut(s)	240, 374
TasI	AATT	6 cut(s)	164, 184, 521, 564, 574, 627
Tru1I	TTAA	2 cut(s)	450, 594
Tru9I	TTAA	2 cut(s)	450, 594
TseI	GCWGC	5 cut(s)	7, 29, 77, 291, 329
TspDTI	ATGAA	1 cut(s)	370
XagI	CCTNNNNNAGG	1 cut(s)	395
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.