Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

28099826 .. 28100771

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGACTCCACCCAAGCTTTTCTTGATGCTTGGGCTGCTGCTTGTGGAGCCTCTGCGGATTCTTCTGAGATATATGTACCCAAGGGGAGCTCACATGTCACTTTTAGGATTGATGGAACACTCGTGGCTTCTCCTGATTACCGAGTACTAGGTCAAGCAAACAACTGGTTTAGCTTTGAAGGAGTTACTGGGGTAAACATTGTCGGATGGGCGCTTGATGCTAAGGGTTCCAGCTTCTGGGCTTGCAAATTAAGTACCGAAACCACCAGTTGTCCTAATGGAGCCATGACTTTGAGTTTTACAAACTCAAAAGACATTAGAGTTGAAGGACTAATGTCATTGAACTGCCAAATGTTTCACGTTGTGATAAACGGCTGCCATGATGTACCCATTCAAGGCGTCAAAATTATTGCTGCTGGCAATAGCCCTAACACCGATGACATTCATGCCCAATTTTCCAAAAATGTTGCAATCTTTGACACCTCCATCAAAACCAGGGATGATTGTGTCTCTATTGGCCCCGGCACCAAGGACTTGTGGATGGAACGCATATCAATCATTGGGAGCCTAGCCAAAGATTTGGAAGAGGAAGTAGTCAAAAATGTAACGGTCAAAAATGCGATTTTTAAGGGTACCCAAAATGGGTTGAGGATAAAAGTCTTGGGCGAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

225

Amino Acids

24.06

Weight (kDa)

5.34

Isoelectric Point (pI)

23.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	30 - 220	4.9e-37	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	632
AccB1I	GGYRCC	2 cut(s)	524, 632
AccB7I	CCANNNNNTGG	1 cut(s)	237
AciI	CCGC	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	5 cut(s)	78, 147, 256, 387, 634
AfiI	CCNNNNNNNGG	3 cut(s)	237, 395, 642
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	179, 326, 343, 395
AjnI	CCWGG	1 cut(s)	494
AluBI	AGCT	4 cut(s)	17, 90, 174, 234
AluI	AGCT	4 cut(s)	17, 90, 174, 234
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	514, 662
AlwNI	CAGNNNCTG	1 cut(s)	237
AoxI	GGCC	1 cut(s)	517
ApeKI	GCWGC	4 cut(s)	35, 38, 375, 413
Asp718I	GGTACC	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	518
AsuC2I	CCSGG	1 cut(s)	522
BanI	GGYRCC	2 cut(s)	524, 632
BanII	GRGCYC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	4 cut(s)	22, 25, 362, 400
BccI	CCATC	4 cut(s)	107, 201, 494, 535
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	2 cut(s)	514, 662
BfaI	CTAG	3 cut(s)	149, 569, 673
BfoI	RGCGCY	1 cut(s)	215
BisI	GCNGC	4 cut(s)	36, 39, 376, 414
BlsI	GCNGC	4 cut(s)	37, 40, 377, 415
BmcAI	AGTACT	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	496, 522
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	7 cut(s)	49, 229, 283, 520, 526, 566, 634
BmrFI	CCNGG	2 cut(s)	496, 522
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	16, 208
BmuI	ACTGGG	1 cut(s)	198
BoxI	GACNNNNGTC	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	4 cut(s)	81, 495, 520, 528
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 395, 642
Bse1I	ACTGG	3 cut(s)	170, 193, 267
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	4 cut(s)	81, 495, 520, 528
BseGI	GGATG	3 cut(s)	212, 505, 546
BseLI	CCNNNNNNNGG	3 cut(s)	237, 395, 642
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	170, 193, 267
BseXI	GCAGC	4 cut(s)	22, 25, 362, 400
BshFI	GGCC	1 cut(s)	519
BshNI	GGYRCC	2 cut(s)	524, 632
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	3 cut(s)	237, 395, 642
BsmAI	GTCTC	2 cut(s)	514, 662
BsnI	GGCC	1 cut(s)	519
Bso31I	GGTCTC	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	92
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	7 cut(s)	49, 229, 283, 520, 526, 566, 634
BspT107I	GGYRCC	2 cut(s)	524, 632
BspTNI	GGTCTC	1 cut(s)	662
BsrI	ACTGG	3 cut(s)	170, 193, 267
BssECI	CCNNGG	4 cut(s)	81, 495, 520, 528
BssNI	GRCGYC	1 cut(s)	399
BssSI	CACGAG	1 cut(s)	122
BssT1I	CCWWGG	2 cut(s)	81, 528
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	244, 418
BstDEI	CTNAG	2 cut(s)	66, 222
BstF5I	GGATG	3 cut(s)	212, 505, 546
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstMAI	GTCTC	2 cut(s)	514, 662
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 47, 218
BstNI	CCWGG	1 cut(s)	496
BstNSI	RCATGY	1 cut(s)	98
BstPAI	GACNNNNGTC	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	494, 520
BstV1I	GCAGC	4 cut(s)	22, 25, 362, 400
BstXI	CCANNNNNNTGG	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	212, 505, 546
Cac8I	GCNNGC	2 cut(s)	244, 418
CaiI	CAGNNNCTG	1 cut(s)	237
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	518
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	5 cut(s)	77, 146, 255, 386, 633
CviAII	CATG	4 cut(s)	95, 286, 380, 446
CviQI	GTAC	5 cut(s)	77, 146, 255, 386, 633
DdeI	CTNAG	2 cut(s)	66, 222
DraIII	CACNNNGTG	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	90
Eco130I	CCWWGG	2 cut(s)	81, 528
Eco24I	GRGCYC	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	662
Eco53kI	GAGCTC	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	81, 528
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	2 cut(s)	81, 528
FaeI	CATG	4 cut(s)	98, 289, 383, 449
FaiI	YATR	7 cut(s)	73, 75, 96, 287, 381, 447, 551
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	4 cut(s)	94, 285, 379, 445
Fnu4HI	GCNGC	4 cut(s)	36, 39, 376, 414
FokI	GGATG	3 cut(s)	219, 512, 553
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	4 cut(s)	36, 39, 376, 414
FspBI	CTAG	3 cut(s)	149, 569, 673
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	4 cut(s)	36, 39, 376, 414
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	4 cut(s)	98, 289, 383, 449
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	5, 59
HpaII	CCGG	1 cut(s)	522
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	67, 206
Hpy188III	TCNNGA	2 cut(s)	23, 134
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	173, 320
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	2 cut(s)	246, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 47, 218
HpyF3I	CTNAG	2 cut(s)	66, 222
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	98, 289, 383, 449
HspAI	GCGC	1 cut(s)	212
KpnI	GGTACC	1 cut(s)	636
LmnI	GCTCC	4 cut(s)	47, 87, 281, 564
Lsp1109I	GCAGC	4 cut(s)	22, 25, 362, 400
LweI	GCATC	2 cut(s)	16, 208
MaeI	CTAG	3 cut(s)	149, 569, 673
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	97, 184, 604
MboII	GAAGA	2 cut(s)	54, 596
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	3 cut(s)	248, 405, 452
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	4 cut(s)	61, 493, 580, 642
MseI	TTAA	2 cut(s)	251, 627
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	496, 522
MvaI	CCWGG	1 cut(s)	496
MwoI	GCNNNNNNNGC	3 cut(s)	35, 47, 218
NciI	CCSGG	1 cut(s)	522
NlaIII	CATG	4 cut(s)	98, 289, 383, 449
NlaIV	GGNNCC	7 cut(s)	49, 229, 283, 520, 526, 566, 634
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	1 cut(s)	98
PciI	ACATGT	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	4 cut(s)	37, 40, 377, 415
PscI	ACATGT	1 cut(s)	94
PshAI	GACNNNNGTC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	7 cut(s)	49, 229, 283, 520, 526, 566, 634
PspPI	GGNCC	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	237
RsaI	GTAC	5 cut(s)	78, 147, 256, 387, 634
RsaNI	GTAC	5 cut(s)	77, 146, 255, 386, 633
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	251, 627
SatI	GCNGC	4 cut(s)	36, 39, 376, 414
Sau96I	GGNCC	1 cut(s)	518
ScaI	AGTACT	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	496, 522
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	8 cut(s)	19, 92, 154, 176, 236, 363, 485, 674
SfaNI	GCATC	2 cut(s)	16, 208
Sse9I	AATT	3 cut(s)	248, 405, 452
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	3 cut(s)	149, 569, 673
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	494, 520
StyI	CCWWGG	2 cut(s)	81, 528
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	1 cut(s)	363
TasI	AATT	3 cut(s)	248, 405, 452
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	251, 627
Tru9I	TTAA	2 cut(s)	251, 627
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	4 cut(s)	35, 38, 375, 413
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	237
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	3 cut(s)	149, 569, 673
ZrmI	AGTACT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.