Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016190.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

16833 .. 17553

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016190.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgtttcacattgtgataaacggctgccaagatgtactgattcaaggcgtcaaagttattgccgctggaaatagcccaaacactgatggtatgtccagttttccagaaatgttgcagtcttcgacacctccatcaaaactggggacgattgcgtctctattggccccggcaccaaggactagtggatggaacgcatatcatgcggacctgggcatggctatagagagcctggccaaagacttggaagaggaaggtgtccaaaatgtaacactcaaaaatgcgattttcaagggtaccacaaatggtctcaggataaagtcgtgggcaagacccagcacggggtttgtgcaagatgtccgattccttgatgttgaaatgattaaagtccaaaaccccattgtaattgaccagaattactgtccacccaacctcaactgtcctggtcaggtaagaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

152

Amino Acids

16.41

Weight (kDa)

6.07

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	2 cut(s)	169, 293
AciI	CCGC	2 cut(s)	63, 203
AcoI	YGGCCR	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	48
AdeI	CACNNNGTG	1 cut(s)	13
AfaI	GTAC	2 cut(s)	36, 295
AfiI	CCNNNNNNNGG	3 cut(s)	214, 338, 339
AgsI	TTSAA	3 cut(s)	44, 289, 374
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	3 cut(s)	207, 228, 439
Alw26I	GTCTC	2 cut(s)	159, 311
AoxI	GGCC	2 cut(s)	162, 231
ApeKI	GCWGC	1 cut(s)	24
Asp718I	GGTACC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	163, 205
AsuC2I	CCSGG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	233
BanI	GGYRCC	2 cut(s)	169, 293
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	3 cut(s)	80, 139, 180
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	3 cut(s)	209, 230, 441
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	159, 311
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	25, 63
BlsI	GCNGC	2 cut(s)	26, 64
Bme1390I	CCNGG	4 cut(s)	167, 209, 230, 441
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	163, 205
BmiI	GGNNCC	3 cut(s)	165, 171, 295
BmrFI	CCNGG	4 cut(s)	167, 209, 230, 441
BmrI	ACTGGG	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	165, 173, 208
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 338, 339
Bse1I	ACTGG	2 cut(s)	96, 144
BseBI	CCWGG	3 cut(s)	209, 230, 441
BseDI	CCNNGG	3 cut(s)	165, 173, 208
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	3 cut(s)	214, 338, 339
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	2 cut(s)	96, 144
BseXI	GCAGC	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	332
BshFI	GGCC	2 cut(s)	164, 233
BshNI	GGYRCC	2 cut(s)	169, 293
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	214, 338, 339
BsmAI	GTCTC	2 cut(s)	159, 311
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	164, 233
Bso31I	GGTCTC	1 cut(s)	311
BspACI	CCGC	2 cut(s)	63, 203
BspANI	GGCC	2 cut(s)	164, 233
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	165, 171, 295
BspT107I	GGYRCC	2 cut(s)	169, 293
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	96, 144
BssECI	CCNNGG	3 cut(s)	165, 173, 208
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	3 cut(s)	209, 230, 441
Bst4CI	ACNGT	2 cut(s)	419, 437
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	191
BstMAI	GTCTC	2 cut(s)	159, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	3 cut(s)	209, 230, 441
BstSCI	CCNGG	4 cut(s)	165, 207, 228, 439
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	111
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	164, 233
BtsCI	GGATG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	163, 205
CseI	GACGC	2 cut(s)	37, 141
Csp6I	GTAC	2 cut(s)	35, 294
CviAII	CATG	2 cut(s)	200, 214
CviJI	RGCY	6 cut(s)	24, 75, 164, 218, 228, 233
CviKI_1	RGCY	6 cut(s)	24, 75, 164, 218, 228, 233
CviQI	GTAC	2 cut(s)	35, 294
DdeI	CTNAG	1 cut(s)	308
DraIII	CACNNNGTG	1 cut(s)	13
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	205
EcoRII	CCWGG	3 cut(s)	207, 228, 439
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	2 cut(s)	203, 217
FaiI	YATR	5 cut(s)	92, 196, 201, 215, 221
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	199, 213
Fnu4HI	GCNGC	2 cut(s)	25, 63
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	25, 63
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	25, 63
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	164, 233
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	2 cut(s)	37, 141
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	203, 217
HinfI	GANTC	2 cut(s)	40, 360
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	2 cut(s)	104, 310
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	419, 437
HpyCH4V	TGCA	2 cut(s)	115, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	308
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	203, 217
KpnI	GGTACC	1 cut(s)	297
Lsp1109I	GCAGC	1 cut(s)	11
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	111, 257
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	2 cut(s)	402, 412
MluNI	TGGCCA	1 cut(s)	233
MnlI	CCTC	3 cut(s)	138, 241, 440
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	2 cut(s)	381, 457
Msp20I	TGGCCA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	4 cut(s)	167, 209, 230, 441
MvaI	CCWGG	3 cut(s)	209, 230, 441
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	167
NlaIII	CATG	2 cut(s)	203, 217
NlaIV	GGNNCC	3 cut(s)	165, 171, 295
PfeI	GAWTC	2 cut(s)	40, 360
PkrI	GCNGC	2 cut(s)	26, 64
Psp6I	CCWGG	3 cut(s)	207, 228, 439
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	3 cut(s)	207, 228, 439
PspN4I	GGNNCC	3 cut(s)	165, 171, 295
PspPI	GGNCC	2 cut(s)	163, 205
RsaI	GTAC	2 cut(s)	36, 295
RsaNI	GTAC	2 cut(s)	35, 294
SaqAI	TTAA	2 cut(s)	381, 457
SatI	GCNGC	2 cut(s)	25, 63
Sau96I	GGNCC	2 cut(s)	163, 205
ScrFI	CCNGG	4 cut(s)	167, 209, 230, 441
SetI	ASST	5 cut(s)	130, 210, 256, 432, 450
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	2 cut(s)	402, 412
SsiI	CCGC	2 cut(s)	63, 203
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	4 cut(s)	165, 207, 228, 439
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	419, 437
TaqI	TCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	402, 412
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	40, 360
Tru1I	TTAA	2 cut(s)	381, 457
Tru9I	TTAA	2 cut(s)	381, 457
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	1 cut(s)	24
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	205
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.