Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

29928235 .. 29928882

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCACTGAACAGCCAAATGTTTCACATTGTGATAAACGGCTGCCAAGATGTACTCATTCAAAGCGTCAAAGTCATTGCCGCTGGAAATAGCCCAAACACTGATGGCATCCATGTCCAGTACTTTTCCAGAAATATTGCAATCTTTGACACCTCCATCAAAACTGGGGACGATTGTGTCTCTATTGGCCCCGGCACCAAGGAATTGTGGATGGAACGCATATCATGCGGACCTGGCCATGGCATTAGCATAGGGAGCCTGGCCAAAGACTTGGAAGAGGAAGGAGTCCAAAATGTAACACTGAAAAATGCGATTTTCAAGGATACTACAAATGGTCTCAGGATAAAGTCCTGGGCAAGACCCAGCACCGGGTTTGTTCAAGGCGTCCGATCCCTTGATGTTGAAATTAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

138

Amino Acids

14.93

Weight (kDa)

5.86

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	2 - 138	2.4e-41	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	194
AciI	CCGC	2 cut(s)	81, 228
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	2 cut(s)	235, 261
AcyI	GRCGYC	1 cut(s)	384
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	54, 122
AfiI	CCNNNNNNNGG	3 cut(s)	239, 368, 369
AgsI	TTSAA	4 cut(s)	62, 319, 380, 404
AjnI	CCWGG	3 cut(s)	232, 258, 350
Alw26I	GTCTC	2 cut(s)	184, 341
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	3 cut(s)	187, 235, 261
ApeKI	GCWGC	1 cut(s)	42
AseI	ATTAAT	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	188, 230
AsuC2I	CCSGG	2 cut(s)	192, 370
AvaII	GGWCC	1 cut(s)	230
BalI	TGGCCA	2 cut(s)	237, 263
BanI	GGYRCC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	3 cut(s)	98, 164, 205
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	3 cut(s)	234, 260, 352
BciVI	GTATCC	1 cut(s)	316
BcnI	CCSGG	2 cut(s)	192, 370
BcoDI	GTCTC	2 cut(s)	184, 341
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	43, 81
BlsI	GCNGC	2 cut(s)	44, 82
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	5 cut(s)	192, 234, 260, 352, 370
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	188, 230
BmiI	GGNNCC	3 cut(s)	190, 196, 257
BmrFI	CCNGG	5 cut(s)	192, 234, 260, 352, 370
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	192, 370
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	4 cut(s)	190, 198, 238, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 368, 369
Bse1I	ACTGG	2 cut(s)	118, 169
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	234, 260, 352
BseDI	CCNNGG	4 cut(s)	190, 198, 238, 351
BseGI	GGATG	2 cut(s)	108, 216
BseLI	CCNNNNNNNGG	3 cut(s)	239, 368, 369
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	2 cut(s)	118, 169
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	3 cut(s)	189, 237, 263
BshNI	GGYRCC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	192, 369
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	3 cut(s)	239, 368, 369
BsmAI	GTCTC	2 cut(s)	184, 341
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	189, 237, 263
Bso31I	GGTCTC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	389
Bsp19I	CCATGG	1 cut(s)	238
BspACI	CCGC	2 cut(s)	81, 228
BspANI	GGCC	3 cut(s)	189, 237, 263
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	190, 196, 257
BspPI	GGATC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	118, 169
BssECI	CCNNGG	4 cut(s)	190, 198, 238, 351
BssMI	GATC	1 cut(s)	389
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	198, 238
Bst2UI	CCWGG	3 cut(s)	234, 260, 352
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	108, 216
BstKTI	GATC	1 cut(s)	392
BstMAI	GTCTC	2 cut(s)	184, 341
BstMBI	GATC	1 cut(s)	389
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 234, 255
BstNI	CCWGG	3 cut(s)	234, 260, 352
BstSCI	CCNGG	5 cut(s)	190, 232, 258, 350, 368
BstV1I	GCAGC	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	189, 237, 263
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	108, 216
BtsIMutI	CAGTG	3 cut(s)	5, 99, 299
Cfr13I	GGNCC	2 cut(s)	188, 230
CseI	GACGC	2 cut(s)	55, 373
Csp6I	GTAC	2 cut(s)	53, 121
CviAII	CATG	3 cut(s)	113, 225, 239
CviJI	RGCY	7 cut(s)	15, 42, 93, 189, 237, 258, 263
CviKI_1	RGCY	7 cut(s)	15, 42, 93, 189, 237, 258, 263
CviQI	GTAC	2 cut(s)	53, 121
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	391
DpnII	GATC	1 cut(s)	389
DraIII	CACNNNGTG	1 cut(s)	31
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
EaeI	YGGCCR	2 cut(s)	235, 261
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	198, 238
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	230
EcoRII	CCWGG	3 cut(s)	232, 258, 350
EcoT14I	CCWWGG	2 cut(s)	198, 238
ErhI	CCWWGG	2 cut(s)	198, 238
FaeI	CATG	3 cut(s)	116, 228, 242
FaiI	YATR	5 cut(s)	114, 221, 226, 240, 251
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	3 cut(s)	112, 224, 238
Fnu4HI	GCNGC	2 cut(s)	43, 81
FokI	GGATG	2 cut(s)	95, 223
Fsp4HI	GCNGC	2 cut(s)	43, 81
GluI	GCNGC	2 cut(s)	43, 81
GsaI	CCCAGC	1 cut(s)	366
HaeIII	GGCC	3 cut(s)	189, 237, 263
HapII	CCGG	2 cut(s)	192, 369
HgaI	GACGC	2 cut(s)	55, 373
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	116, 228, 242
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	2 cut(s)	192, 369
Hpy188I	TCNGA	1 cut(s)	389
Hpy188III	TCNNGA	2 cut(s)	129, 340
HpyAV	CCTTC	1 cut(s)	275
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 234, 255
HpyF3I	CTNAG	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	116, 228, 242
Kzo9I	GATC	1 cut(s)	389
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	3, 295
MalI	GATC	1 cut(s)	391
MboI	GATC	1 cut(s)	389
MboII	GAAGA	1 cut(s)	287
MlsI	TGGCCA	2 cut(s)	237, 263
MluCI	AATT	3 cut(s)	203, 405, 412
MluNI	TGGCCA	2 cut(s)	237, 263
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	2 cut(s)	163, 271
Mox20I	TGGCCA	2 cut(s)	237, 263
MscI	TGGCCA	2 cut(s)	237, 263
MseI	TTAA	2 cut(s)	408, 415
Msp20I	TGGCCA	2 cut(s)	237, 263
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	2 cut(s)	192, 369
MspR9I	CCNGG	5 cut(s)	192, 234, 260, 352, 370
MvaI	CCWGG	3 cut(s)	234, 260, 352
MwoI	GCNNNNNNNGC	3 cut(s)	225, 234, 255
NciI	CCSGG	2 cut(s)	192, 370
NcoI	CCATGG	1 cut(s)	238
NdeII	GATC	1 cut(s)	389
NlaIII	CATG	3 cut(s)	116, 228, 242
NlaIV	GGNNCC	3 cut(s)	190, 196, 257
NmuCI	GTSAC	1 cut(s)	3
PkrI	GCNGC	2 cut(s)	44, 82
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PshBI	ATTAAT	1 cut(s)	408
Psp6I	CCWGG	3 cut(s)	232, 258, 350
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	3 cut(s)	232, 258, 350
PspN4I	GGNNCC	3 cut(s)	190, 196, 257
PspPI	GGNCC	2 cut(s)	188, 230
RsaI	GTAC	2 cut(s)	54, 122
RsaNI	GTAC	2 cut(s)	53, 121
SaqAI	TTAA	2 cut(s)	408, 415
SatI	GCNGC	2 cut(s)	43, 81
Sau3AI	GATC	1 cut(s)	389
Sau96I	GGNCC	2 cut(s)	188, 230
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	5 cut(s)	192, 234, 260, 352, 370
SetI	ASST	2 cut(s)	155, 235
SfaNI	GCATC	1 cut(s)	117
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	3 cut(s)	203, 405, 412
SsiI	CCGC	2 cut(s)	81, 228
SspI	AATATT	1 cut(s)	136
StyD4I	CCNGG	5 cut(s)	190, 232, 258, 350, 368
StyI	CCWWGG	2 cut(s)	198, 238
TasI	AATT	3 cut(s)	203, 405, 412
TatI	WGTACW	2 cut(s)	52, 120
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	408, 415
Tru9I	TTAA	2 cut(s)	408, 415
TscAI	CASTG	3 cut(s)	12, 106, 306
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	3
TspRI	CASTG	3 cut(s)	12, 106, 306
VpaK11BI	GGWCC	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.