Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

28030561 .. 28032344

Gene Structure 1784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGCATCCATGTTCAGTTTTCCAAAAATGTTGCAATCTTCGACACCTCCATCAAAACTGAGGACGATTGTGTCTCTATTGGCCCTGGCACCAAGGAATTGTGGATGGAACGCATATCATGCGGACCTGGCCATGGCATTAGCATAGGGAGCCTGGCCAAAGACTTGGAAGAGGAAGGAGTCCAAAATGTAACACTGAAAAATGCGATTTTCAAGGATACTACAAATGGTCTCAAGATAAAGTCCTGGGCAAGACCCAGCACCGGGTTTGTGCAAGGTGTCCGATCCCTTGATGTTGAAATGATTAATGTCCAAAACCCCATTGTAATTGACCAGAATTACTGCCCACACAACCTCAACTGTCCTGGTCAGTTGTTGGCTTGGTTTCTTCATTTCGGTGAGGACGCCCCTTCGGCCATCGGGTTAGACGGGCAACCCCACTTGATAAAGGTGGGTAGCAGCATCAATTTGGATAAGCCCTTTGAATTAGAAGGATGGCAATCCCCACTTGACAAAGGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

175

Amino Acids

18.93

Weight (kDa)

5.12

Isoelectric Point (pI)

26.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	2 - 118	1.3e-37	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	3 cut(s)	130, 156, 414
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	134, 263, 264
AgsI	TTSAA	3 cut(s)	214, 299, 485
AjnI	CCWGG	5 cut(s)	85, 127, 153, 245, 364
Alw26I	GTCTC	2 cut(s)	79, 236
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	4 cut(s)	82, 130, 156, 414
ApeKI	GCWGC	1 cut(s)	459
AseI	ATTAAT	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	83, 125
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	2 cut(s)	132, 158
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	4 cut(s)	59, 100, 425, 489
BciT130I	CCWGG	5 cut(s)	87, 129, 155, 247, 366
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	79, 236
BfuI	GTATCC	1 cut(s)	211
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	1 cut(s)	460
BlsI	GCNGC	1 cut(s)	461
Bme1390I	CCNGG	6 cut(s)	87, 129, 155, 247, 265, 366
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	83, 125
BmiI	GGNNCC	2 cut(s)	91, 152
BmrFI	CCNGG	6 cut(s)	87, 129, 155, 247, 265, 366
BmsI	GCATC	2 cut(s)	15, 471
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	499
BsaHI	GRCGYC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	4 cut(s)	85, 93, 133, 246
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 263, 264
Bse8I	GATNNNNATC	1 cut(s)	499
BseBI	CCWGG	5 cut(s)	87, 129, 155, 247, 366
BseDI	CCNNGG	4 cut(s)	85, 93, 133, 246
BseGI	GGATG	3 cut(s)	6, 111, 500
BseJI	GATNNNNATC	1 cut(s)	499
BseLI	CCNNNNNNNGG	3 cut(s)	134, 263, 264
BseMII	CTCAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	471
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	4 cut(s)	84, 132, 158, 416
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	3 cut(s)	134, 263, 264
BsmAI	GTCTC	2 cut(s)	79, 236
BsnI	GGCC	4 cut(s)	84, 132, 158, 416
Bso31I	GGTCTC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	284
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	4 cut(s)	84, 132, 158, 416
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	91, 152
BspPI	GGATC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	236
BssECI	CCNNGG	4 cut(s)	85, 93, 133, 246
BssMI	GATC	1 cut(s)	284
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	2 cut(s)	93, 133
Bst2UI	CCWGG	5 cut(s)	87, 129, 155, 247, 366
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	6, 111, 500
BstKTI	GATC	1 cut(s)	287
BstMAI	GTCTC	2 cut(s)	79, 236
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 129, 150, 413
BstNI	CCWGG	5 cut(s)	87, 129, 155, 247, 366
BstSCI	CCNGG	6 cut(s)	85, 127, 153, 245, 263, 364
BstV1I	GCAGC	1 cut(s)	471
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	4 cut(s)	84, 132, 158, 416
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	6, 111, 500
BtsIMutI	CAGTG	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	83, 125
CseI	GACGC	1 cut(s)	413
CviAII	CATG	3 cut(s)	11, 120, 134
CviJI	RGCY	7 cut(s)	84, 132, 153, 158, 380, 416, 478
CviKI_1	RGCY	7 cut(s)	84, 132, 153, 158, 380, 416, 478
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	3 cut(s)	130, 156, 414
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	93, 133
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	125
EcoRII	CCWGG	5 cut(s)	85, 127, 153, 245, 364
EcoT14I	CCWWGG	2 cut(s)	93, 133
ErhI	CCWWGG	2 cut(s)	93, 133
FaeI	CATG	3 cut(s)	14, 123, 137
FaiI	YATR	5 cut(s)	12, 116, 121, 135, 146
FatI	CATG	3 cut(s)	10, 119, 133
Fnu4HI	GCNGC	1 cut(s)	460
FokI	GGATG	2 cut(s)	118, 507
Fsp4HI	GCNGC	1 cut(s)	460
GluI	GCNGC	1 cut(s)	460
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	4 cut(s)	84, 132, 158, 416
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	14, 123, 137
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	410
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	170, 420, 485
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	2 cut(s)	35, 274
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 129, 150, 413
HpyF3I	CTNAG	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	14, 123, 137
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	2 cut(s)	15, 471
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	3 cut(s)	31, 182, 380
MlsI	TGGCCA	2 cut(s)	132, 158
MluCI	AATT	5 cut(s)	98, 327, 337, 466, 485
MluNI	TGGCCA	2 cut(s)	132, 158
MlyI	GAGTC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	55, 58, 166, 365, 394
Mox20I	TGGCCA	2 cut(s)	132, 158
MscI	TGGCCA	2 cut(s)	132, 158
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	396
Msp20I	TGGCCA	2 cut(s)	132, 158
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	6 cut(s)	87, 129, 155, 247, 265, 366
MvaI	CCWGG	5 cut(s)	87, 129, 155, 247, 366
MwoI	GCNNNNNNNGC	4 cut(s)	120, 129, 150, 413
NciI	CCSGG	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	3 cut(s)	14, 123, 137
NlaIV	GGNNCC	2 cut(s)	91, 152
PkrI	GCNGC	1 cut(s)	461
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	306
Psp6I	CCWGG	5 cut(s)	85, 127, 153, 245, 364
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	5 cut(s)	85, 127, 153, 245, 364
PspN4I	GGNNCC	2 cut(s)	91, 152
PspPI	GGNCC	2 cut(s)	83, 125
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	460
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	2 cut(s)	83, 125
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	6 cut(s)	87, 129, 155, 247, 265, 366
SetI	ASST	6 cut(s)	50, 130, 280, 357, 453, 520
SfaNI	GCATC	2 cut(s)	15, 471
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	5 cut(s)	98, 327, 337, 466, 485
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	6 cut(s)	85, 127, 153, 245, 263, 364
StyI	CCWWGG	2 cut(s)	93, 133
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	1 cut(s)	42
TasI	AATT	5 cut(s)	98, 327, 337, 466, 485
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	201
TseI	GCWGC	1 cut(s)	459
TspDTI	ATGAA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.