Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

28538686 .. 28547846

Gene Structure 9161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G020840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGTTACAAATGTACACGAGTTTATACAGTGCGAAGAAGTTGGCAAATTAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGGCCAAGCTAACAACTGGTTCAGCTTTGAAGGAGTTAGCGGGGTAAAGATTGTCGGAGGAGCACTTGATGCCAAAGGTTCGGCCTTATGGGCTTGCAAATTAAGTACCAAAACCGCCAGTTGTCCTGATGGAGCCACGACTTTGAGTTTTACAAACTCCAAAGACATTAGAGTTGAAGGACTAATGTCACTGAACAGCCAAATGTTTCACATTGTGATAAACGGTTGCCAAGATGTACTGATTCAAGGCGTCAAAGTCATTGACGCTGGAAATAAAATGTTTGCAATCTTTGACACCTCCATCAAAACTGGGGACGATTGTGTCTCTATTGGCCCCGGCACCAAGGACTTGTGGATGGAACGCATATCATGCGGACCTGGGCATGGCAACATAGGGAGCCTGGCCAAAGACTGGGAAGAGGAAGGAGTCCAAAATGTCACTACAAGAAAAATGGGTACCACAAATGGTTTCTGGATGAAGTCCTGGGCAAGACCCAGCACGGGGTTTGTTCAAGGTGTATCAGGTGTCAAAGTTAGCGACGTGCTGTACCAGTACATTCGAGGGACATCAGCAACAGCAGTCGCAATAAAATTTGATTGTACTGCAGCAAATCCATGCAGTGGAATAAAACTCGAAAACGTGAATTTGACTTGCCGGAAGCAAATAGTTCAATCATATTGTACCAATGCAAATGGAAAGAGTGTTGGCACTGTGCAACCAAGCAGTTATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

293

Amino Acids

31.5

Weight (kDa)

8.4

Isoelectric Point (pI)

27.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	53 - 222	5.8e-27	Glycosyl hydrolases family 28
Glyco_hydro_28	PF00295	222 - 280	1.4e-09	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	880
AasI	GACNNNNNNGTC	1 cut(s)	467
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	2 cut(s)	485, 602
AccB7I	CCANNNNNTGG	2 cut(s)	558, 767
AciI	CCGC	3 cut(s)	186, 261, 519
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	2 cut(s)	737, 790
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	396
AdeI	CACNNNGTG	1 cut(s)	361
AfaI	GTAC	8 cut(s)	69, 253, 384, 604, 695, 701, 748, 829
AfiI	CCNNNNNNNGG	6 cut(s)	28, 530, 558, 647, 648, 767
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	5 cut(s)	176, 323, 392, 659, 818
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	3 cut(s)	523, 546, 629
AluBI	AGCT	3 cut(s)	41, 155, 171
AluI	AGCT	3 cut(s)	41, 155, 171
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	4 cut(s)	148, 228, 478, 549
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	2 cut(s)	737, 790
Asp718I	GGTACC	1 cut(s)	602
AspS9I	GGNCC	2 cut(s)	479, 521
AsuC2I	CCSGG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	2 cut(s)	485, 602
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	764
BccI	CCATC	3 cut(s)	269, 455, 496
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	3 cut(s)	525, 548, 631
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	475
BfmI	CTRYAG	2 cut(s)	54, 750
BfrI	CTTAAG	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	754
Bme1390I	CCNGG	4 cut(s)	483, 525, 548, 631
Bme18I	GGWCC	1 cut(s)	521
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	479, 521
BmiI	GGNNCC	5 cut(s)	280, 481, 487, 545, 604
BmrFI	CCNGG	4 cut(s)	483, 525, 548, 631
BmrI	ACTGGG	2 cut(s)	465, 568
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	2 cut(s)	465, 568
BoxI	GACNNNNGTC	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	481, 489, 524, 630
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 530, 558, 647, 648, 767
Bse1I	ACTGG	5 cut(s)	167, 264, 460, 563, 697
BseBI	CCWGG	3 cut(s)	525, 548, 631
BseDI	CCNNGG	4 cut(s)	481, 489, 524, 630
BseGI	GGATG	2 cut(s)	507, 627
BseLI	CCNNNNNNNGG	6 cut(s)	28, 530, 558, 647, 648, 767
BseNI	ACTGG	5 cut(s)	167, 264, 460, 563, 697
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	764
BseYI	CCCAGC	1 cut(s)	641
BshFI	GGCC	4 cut(s)	150, 230, 480, 551
BshNI	GGYRCC	2 cut(s)	485, 602
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	483, 802
BslFI	GGGAC	2 cut(s)	473, 724
BslI	CCNNNNNNNGG	6 cut(s)	28, 530, 558, 647, 648, 767
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	2 cut(s)	473, 724
BsnI	GGCC	4 cut(s)	150, 230, 480, 551
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	186, 261, 519
BspANI	GGCC	4 cut(s)	150, 230, 480, 551
BspLI	GGNNCC	5 cut(s)	280, 481, 487, 545, 604
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	2 cut(s)	485, 602
BspTI	CTTAAG	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	5 cut(s)	167, 264, 460, 563, 697
BssECI	CCNNGG	4 cut(s)	481, 489, 524, 630
BssMI	GATC	1 cut(s)	18
BssNI	GRCGYC	1 cut(s)	396
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	3 cut(s)	525, 548, 631
Bst4CI	ACNGT	3 cut(s)	84, 371, 859
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	396
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	2 cut(s)	215, 516
BstAUI	TGTACA	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	241
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	507, 627
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 236, 516
BstNI	CCWGG	3 cut(s)	525, 548, 631
BstPAI	GACNNNNGTC	1 cut(s)	331
BstSCI	CCNGG	4 cut(s)	481, 523, 546, 629
BstSFI	CTRYAG	2 cut(s)	54, 750
BstV1I	GCAGC	1 cut(s)	764
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	150, 230, 480, 551
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	507, 627
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	4 cut(s)	89, 335, 772, 855
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	479, 521
CseI	GACGC	2 cut(s)	385, 419
Csp6I	GTAC	8 cut(s)	68, 252, 383, 603, 694, 700, 747, 828
CviAII	CATG	3 cut(s)	516, 530, 762
CviQI	GTAC	8 cut(s)	68, 252, 383, 603, 694, 700, 747, 828
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DraIII	CACNNNGTG	1 cut(s)	361
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoRII	CCWGG	3 cut(s)	523, 546, 629
EcoRV	GATATC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	519, 533, 765
FaqI	GGGAC	2 cut(s)	473, 724
FatI	CATG	3 cut(s)	515, 529, 761
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	753
FokI	GGATG	2 cut(s)	514, 634
Fsp4HI	GCNGC	1 cut(s)	753
GluI	GCNGC	1 cut(s)	753
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	4 cut(s)	150, 230, 480, 551
HapII	CCGG	2 cut(s)	483, 802
HgaI	GACGC	2 cut(s)	385, 419
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	3 cut(s)	519, 533, 765
HinfI	GANTC	3 cut(s)	125, 388, 573
HpaII	CCGG	2 cut(s)	483, 802
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	124, 203
Hpy188III	TCNNGA	2 cut(s)	272, 619
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	689
HpyAV	CCTTC	4 cut(s)	22, 170, 317, 563
HpyCH4III	ACNGT	3 cut(s)	84, 371, 859
HpyCH4IV	ACGT	2 cut(s)	687, 786
HpyCH4V	TGCA	8 cut(s)	111, 132, 243, 431, 752, 765, 836, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 236, 516
HpySE526I	ACGT	2 cut(s)	687, 786
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	3 cut(s)	519, 533, 765
KpnI	GGTACC	1 cut(s)	606
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	3 cut(s)	206, 278, 543
Lsp1109I	GCAGC	1 cut(s)	764
LweI	GCATC	1 cut(s)	205
MaeII	ACGT	2 cut(s)	687, 786
MaeIII	GTNAC	3 cut(s)	58, 333, 583
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	2 cut(s)	101, 575
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	4 cut(s)	101, 245, 737, 790
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	582
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	59, 197, 454, 559, 701
Mox20I	TGGCCA	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	5 cut(s)	14, 24, 33, 104, 248
MslI	CAYNNNNRTG	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	551
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	2 cut(s)	483, 802
MspR9I	CCNGG	4 cut(s)	483, 525, 548, 631
MvaI	CCWGG	3 cut(s)	525, 548, 631
MwoI	GCNNNNNNNGC	3 cut(s)	215, 236, 516
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	3 cut(s)	519, 533, 765
NlaIV	GGNNCC	5 cut(s)	280, 481, 487, 545, 604
NmuCI	GTSAC	2 cut(s)	333, 583
PfeI	GAWTC	2 cut(s)	125, 388
PflMI	CCANNNNNTGG	2 cut(s)	558, 767
PkrI	GCNGC	1 cut(s)	754
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
PshAI	GACNNNNGTC	1 cut(s)	331
PsiI	TTATAA	1 cut(s)	880
Psp6I	CCWGG	3 cut(s)	523, 546, 629
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	3 cut(s)	523, 546, 629
PspN4I	GGNNCC	5 cut(s)	280, 481, 487, 545, 604
PspPI	GGNCC	2 cut(s)	479, 521
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	8 cut(s)	69, 253, 384, 604, 695, 701, 748, 829
RsaNI	GTAC	8 cut(s)	68, 252, 383, 603, 694, 700, 747, 828
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	5 cut(s)	14, 24, 33, 104, 248
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	479, 521
SchI	GAGTC	1 cut(s)	582
ScrFI	CCNGG	4 cut(s)	483, 525, 548, 631
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	2 cut(s)	54, 750
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	101, 245, 737, 790
SsiI	CCGC	3 cut(s)	186, 261, 519
StyD4I	CCNGG	4 cut(s)	481, 523, 546, 629
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	3 cut(s)	84, 371, 859
TaiI	ACGT	2 cut(s)	690, 789
TaqI	TCGA	2 cut(s)	706, 780
TasI	AATT	4 cut(s)	101, 245, 737, 790
TatI	WGTACW	4 cut(s)	67, 382, 699, 746
TfiI	GAWTC	2 cut(s)	125, 388
Tru1I	TTAA	5 cut(s)	14, 24, 33, 104, 248
Tru9I	TTAA	5 cut(s)	14, 24, 33, 104, 248
TscAI	CASTG	4 cut(s)	89, 342, 772, 862
TseFI	GTSAC	2 cut(s)	333, 583
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	2 cut(s)	333, 583
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	4 cut(s)	89, 342, 772, 862
Van91I	CCANNNNNTGG	2 cut(s)	558, 767
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	521
XagI	CCTNNNNNAGG	1 cut(s)	26
XapI	RAATTY	2 cut(s)	737, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.