Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

5658088 .. 5659557

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G030700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

AGTACATTAATTTTCAATGTCCTAAGTTTTGGAGCCAAGCCTAACGGTGTATTAGATTCTACACAAGCTTTTCTGGATGTATGGACTGCAGCATGTGCCTCCTCTGATTCCACTACTATACGTGTACCAAAAGGGAGGTATTTGCTTCGCAATGCTATGGTTTTCAAAGGTGATAACTGCAAAAGCACAGATATTACTTTTCGAATTGATGGAACATTGATAGCTTCGTCTGATTACCGAGTCCTTGGCCAAGCTAACAACTGGCTAAGCTTCGAAGGAGTTACCTGGGTGTCCATTAACGGAGGTGCCCTTGACGCTAAAGGTACCTCCTTGTGGGCATGCAAGTTAGCTGGAAGCACTGATTGCCCCAACGGAGGAGCCACGAGTCTGAGTTTTACAAACTCCAAAAACATTAACATCAATGGACTAATGTCATTGAACAGCCAGATGTTCCACATTGTGATAACGTACGGCTGCCAAGATGTTCGCATCCAAGGGGTCAAAGTCAATGCAGCTGGAAATAGCCCAAACACTGATGGCATCCATGTCCAATTGTCAAGAAATGTTGCAATCTTCAACACCTCTATCAAAACTGGAGATGATTGTGTCTTGATTGGCCCCGGAACAAAGGACTTGTGGATCGAGCAAATAACTTGTGGTCCTGGCCATGGCATTAGCATAGGGAGTTTAGCCAAAGACTTGGAAGAGGAAGGGGTCCAAAATGTGACAGTTAAAAATGCAATTTTCAAGGGTACTCAAAATGGTTTGAGGATTAAGTCTTGGGCAAGGCTGAGCAACGGATTTGTTCAAGGTGTTCAATTCCTTGATGTCGTAATGTTAAATGTCCAAAATCCTATCGTAATTGACCAAAACTATTGCCCACACAACATCAACTGCCCTGCTCAGGTATCAGGTGTAAGAGTCAGTGATGTCGTGTACCGGAACATTCAAGGAACATCAGCTACATCCATTGCAATAAAATTTGATTGTAGCGCAACAAATCCATGTAGTGGGATAAGACTCGAAAATGTGAGTTTGACCTGCAGGAATCACGAGGTTCAGTCACATTGTGCCAATGCAAGTGGAAAGATTGTTGGCACTGTTCAACCAAACAGTTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

375

Amino Acids

39.9

Weight (kDa)

8.17

Isoelectric Point (pI)

21.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1049
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	2 cut(s)	305, 323
AccB7I	CCANNNNNTGG	1 cut(s)	1010
AclWI	GGATC	1 cut(s)	647
AcoI	YGGCCR	2 cut(s)	247, 664
AcsI	RAATTY	1 cut(s)	980
AdeI	CACNNNGTG	2 cut(s)	460, 1070
AfaI	GTAC	6 cut(s)	4, 126, 325, 470, 754, 938
AfiI	CCNNNNNNNGG	5 cut(s)	333, 374, 668, 904, 1010
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	9 cut(s)	16, 166, 439, 577, 748, 809, 818, 950, 1106
AjnI	CCWGG	2 cut(s)	284, 661
AluBI	AGCT	7 cut(s)	68, 224, 254, 270, 350, 515, 962
AluI	AGCT	7 cut(s)	68, 224, 254, 270, 350, 515, 962
AlwI	GGATC	1 cut(s)	647
AoxI	GGCC	3 cut(s)	247, 616, 664
ApeKI	GCWGC	3 cut(s)	89, 474, 512
ApoI	RAATTY	1 cut(s)	980
AseI	ATTAAT	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	995
AspS9I	GGNCC	3 cut(s)	617, 659, 715
AsuC2I	CCSGG	1 cut(s)	621
AsuHPI	GGTGA	1 cut(s)	182
AsuII	TTCGAA	2 cut(s)	202, 273
AvaII	GGWCC	2 cut(s)	659, 715
BaeGI	GKGCMC	1 cut(s)	310
BalI	TGGCCA	2 cut(s)	249, 666
BanI	GGYRCC	2 cut(s)	305, 323
BauI	CACGAG	2 cut(s)	382, 1052
BbvI	GCAGC	3 cut(s)	101, 461, 524
BccI	CCATC	2 cut(s)	203, 530
BceAI	ACGGC	1 cut(s)	487
BciT130I	CCWGG	2 cut(s)	286, 663
BcnI	CCSGG	1 cut(s)	621
BfmI	CTRYAG	2 cut(s)	87, 1042
BfuAI	ACCTGC	1 cut(s)	1049
BisI	GCNGC	3 cut(s)	90, 475, 513
BlpI	GCTNAGC	2 cut(s)	266, 791
BlsI	GCNGC	3 cut(s)	91, 476, 514
Bme1390I	CCNGG	3 cut(s)	286, 621, 663
Bme18I	GGWCC	2 cut(s)	659, 715
BmgT120I	GGNCC	3 cut(s)	617, 659, 715
BmiI	GGNNCC	6 cut(s)	34, 307, 325, 379, 619, 716
BmrFI	CCNGG	3 cut(s)	286, 621, 663
BmsI	GCATC	2 cut(s)	498, 549
BoxI	GACNNNNGTC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	903
Bpu1102I	GCTNAGC	2 cut(s)	266, 791
Bpu14I	TTCGAA	2 cut(s)	202, 273
BpuMI	CCSGG	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	122
BsaJI	CCNNGG	5 cut(s)	244, 285, 493, 619, 667
BsaWI	WCCGGW	1 cut(s)	939
Bsc4I	CCNNNNNNNGG	5 cut(s)	333, 374, 668, 904, 1010
Bse1I	ACTGG	2 cut(s)	266, 598
Bse3DI	GCAATG	2 cut(s)	157, 969
BseBI	CCWGG	2 cut(s)	286, 663
BseDI	CCNNGG	5 cut(s)	244, 285, 493, 619, 667
BseGI	GGATG	4 cut(s)	82, 489, 540, 965
BseLI	CCNNNNNNNGG	5 cut(s)	333, 374, 668, 904, 1010
BseMI	GCAATG	2 cut(s)	157, 969
BseMII	CTCAG	3 cut(s)	380, 782, 917
BseNI	ACTGG	2 cut(s)	266, 598
BseRI	GAGGAG	2 cut(s)	91, 390
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	101, 461, 524
BshFI	GGCC	3 cut(s)	249, 618, 666
BshNI	GGYRCC	2 cut(s)	305, 323
BsiSI	CCGG	2 cut(s)	621, 940
BsiWI	CGTACG	1 cut(s)	468
BslI	CCNNNNNNNGG	5 cut(s)	333, 374, 668, 904, 1010
BsnI	GGCC	3 cut(s)	249, 618, 666
Bsp119I	TTCGAA	2 cut(s)	202, 273
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	639
Bsp1720I	GCTNAGC	2 cut(s)	266, 791
Bsp19I	CCATGG	1 cut(s)	667
BspANI	GGCC	3 cut(s)	249, 618, 666
BspCNI	CTCAG	3 cut(s)	381, 783, 916
BspLI	GGNNCC	6 cut(s)	34, 307, 325, 379, 619, 716
BspMAI	CTGCAG	2 cut(s)	91, 1046
BspMI	ACCTGC	1 cut(s)	1049
BspPI	GGATC	1 cut(s)	647
BspT104I	TTCGAA	2 cut(s)	202, 273
BspT107I	GGYRCC	2 cut(s)	305, 323
BsrDI	GCAATG	2 cut(s)	157, 969
BsrI	ACTGG	2 cut(s)	266, 598
BssECI	CCNNGG	5 cut(s)	244, 285, 493, 619, 667
BssMI	GATC	1 cut(s)	639
BssSI	CACGAG	2 cut(s)	382, 1052
BssT1I	CCWWGG	3 cut(s)	244, 493, 667
Bst2BI	CACGAG	2 cut(s)	382, 1052
Bst2UI	CCWGG	2 cut(s)	286, 663
Bst4CI	ACNGT	4 cut(s)	47, 730, 1102, 1115
Bst6I	CTCTTC	1 cut(s)	699
BstAPI	GCANNNNNTGC	2 cut(s)	95, 363
BstBAI	YACGTR	1 cut(s)	122
BstBI	TTCGAA	2 cut(s)	202, 273
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	5 cut(s)	23, 266, 389, 791, 903
BstDSI	CCRYGG	1 cut(s)	667
BstF5I	GGATG	4 cut(s)	82, 489, 540, 965
BstHHI	GCGC	1 cut(s)	995
BstKTI	GATC	1 cut(s)	642
BstMBI	GATC	1 cut(s)	639
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 314, 363
BstNI	CCWGG	2 cut(s)	286, 663
BstNSI	RCATGY	2 cut(s)	96, 342
BstPAI	GACNNNNGTC	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	284, 619, 661
BstSFI	CTRYAG	2 cut(s)	87, 1042
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	3 cut(s)	101, 461, 524
BstXI	CCANNNNNNTGG	1 cut(s)	700
BsuRI	GGCC	3 cut(s)	249, 618, 666
BtgI	CCRYGG	1 cut(s)	667
BtsCI	GGATG	4 cut(s)	82, 489, 540, 965
BtsIMutI	CAGTG	4 cut(s)	357, 531, 931, 1098
BveI	ACCTGC	1 cut(s)	1049
Cac8I	GCNNGC	1 cut(s)	340
CfoI	GCGC	1 cut(s)	995
Cfr13I	GGNCC	3 cut(s)	617, 659, 715
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	6 cut(s)	3, 125, 324, 469, 753, 937
CspCI	CAANNNNNGTGG	2 cut(s)	1063, 1098
CviAII	CATG	5 cut(s)	93, 339, 545, 668, 1005
CviQI	GTAC	6 cut(s)	3, 125, 324, 469, 753, 937
DdeI	CTNAG	5 cut(s)	23, 266, 389, 791, 903
DpnI	GATC	1 cut(s)	641
DpnII	GATC	1 cut(s)	639
DraIII	CACNNNGTG	2 cut(s)	460, 1070
EaeI	YGGCCR	2 cut(s)	247, 664
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Eco130I	CCWWGG	3 cut(s)	244, 493, 667
Eco47I	GGWCC	2 cut(s)	659, 715
EcoRII	CCWGG	2 cut(s)	284, 661
EcoT14I	CCWWGG	3 cut(s)	244, 493, 667
ErhI	CCWWGG	3 cut(s)	244, 493, 667
FaeI	CATG	5 cut(s)	96, 342, 548, 671, 1008
FaiI	YATR	9 cut(s)	82, 94, 119, 158, 340, 546, 669, 680, 1006
FatI	CATG	5 cut(s)	92, 338, 544, 667, 1004
Fnu4HI	GCNGC	3 cut(s)	90, 475, 513
FokI	GGATG	4 cut(s)	89, 476, 527, 952
Fsp4HI	GCNGC	3 cut(s)	90, 475, 513
GlaI	GCGC	1 cut(s)	994
GluI	GCNGC	3 cut(s)	90, 475, 513
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	249, 618, 666
HapII	CCGG	2 cut(s)	621, 940
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	995
Hin1II	CATG	5 cut(s)	96, 342, 548, 671, 1008
Hin6I	GCGC	1 cut(s)	993
HinP1I	GCGC	1 cut(s)	993
HindIII	AAGCTT	2 cut(s)	66, 268
HinfI	GANTC	7 cut(s)	56, 107, 240, 385, 921, 1020, 1048
HpaII	CCGG	2 cut(s)	621, 940
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	125, 937
Hpy188I	TCNGA	3 cut(s)	106, 232, 390
Hpy188III	TCNNGA	4 cut(s)	74, 558, 610, 1052
Hpy8I	GTNNAC	2 cut(s)	125, 937
HpyAV	CCTTC	2 cut(s)	269, 704
HpyCH4III	ACNGT	4 cut(s)	47, 730, 1102, 1115
HpyCH4IV	ACGT	2 cut(s)	121, 467
HpyCH4V	TGCA	9 cut(s)	89, 180, 342, 512, 569, 740, 974, 1044, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 314, 363
HpyF3I	CTNAG	5 cut(s)	23, 266, 389, 791, 903
HpySE526I	ACGT	2 cut(s)	121, 467
Hsp92II	CATG	5 cut(s)	96, 342, 548, 671, 1008
HspAI	GCGC	1 cut(s)	993
KpnI	GGTACC	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	639
LmnI	GCTCC	2 cut(s)	32, 377
Lsp1109I	GCAGC	3 cut(s)	101, 461, 524
LweI	GCATC	2 cut(s)	498, 549
MaeII	ACGT	2 cut(s)	121, 467
MaeIII	GTNAC	3 cut(s)	280, 724, 1062
MalI	GATC	1 cut(s)	641
MboI	GATC	1 cut(s)	639
MboII	GAAGA	2 cut(s)	565, 716
MfeI	CAATTG	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	310
MlsI	TGGCCA	2 cut(s)	249, 666
MluCI	AATT	7 cut(s)	9, 204, 551, 741, 818, 861, 980
MluNI	TGGCCA	2 cut(s)	249, 666
MlyI	GAGTC	4 cut(s)	249, 394, 930, 1014
Mox20I	TGGCCA	2 cut(s)	249, 666
MscI	TGGCCA	2 cut(s)	249, 666
MseI	TTAA	6 cut(s)	8, 297, 414, 732, 774, 839
Msp20I	TGGCCA	2 cut(s)	249, 666
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	2 cut(s)	621, 940
MspR9I	CCNGG	3 cut(s)	286, 621, 663
MunI	CAATTG	1 cut(s)	551
MvaI	CCWGG	2 cut(s)	286, 663
MwoI	GCNNNNNNNGC	3 cut(s)	95, 314, 363
NciI	CCSGG	1 cut(s)	621
NcoI	CCATGG	1 cut(s)	667
NdeII	GATC	1 cut(s)	639
NlaIII	CATG	5 cut(s)	96, 342, 548, 671, 1008
NlaIV	GGNNCC	6 cut(s)	34, 307, 325, 379, 619, 716
NmuCI	GTSAC	2 cut(s)	724, 1062
NspI	RCATGY	2 cut(s)	96, 342
NspV	TTCGAA	2 cut(s)	202, 273
PaeI	GCATGC	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	56, 107, 1048
Pfl23II	CGTACG	1 cut(s)	468
PflMI	CCANNNNNTGG	1 cut(s)	1010
PkrI	GCNGC	3 cut(s)	91, 476, 514
PleI	GAGTC	4 cut(s)	248, 393, 929, 1014
PpsI	GAGTC	4 cut(s)	248, 393, 929, 1014
Ppu21I	YACGTR	1 cut(s)	122
PshAI	GACNNNNGTC	1 cut(s)	430
PshBI	ATTAAT	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	284, 661
PspGI	CCWGG	2 cut(s)	284, 661
PspLI	CGTACG	1 cut(s)	468
PspN4I	GGNNCC	6 cut(s)	34, 307, 325, 379, 619, 716
PspPI	GGNCC	3 cut(s)	617, 659, 715
PsrI	GAACNNNNNNTAC	2 cut(s)	946, 978
PstI	CTGCAG	2 cut(s)	91, 1046
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	6 cut(s)	4, 126, 325, 470, 754, 938
RsaNI	GTAC	6 cut(s)	3, 125, 324, 469, 753, 937
SaqAI	TTAA	6 cut(s)	8, 297, 414, 732, 774, 839
SatI	GCNGC	3 cut(s)	90, 475, 513
Sau3AI	GATC	1 cut(s)	639
Sau96I	GGNCC	3 cut(s)	617, 659, 715
SbfI	CCTGCAGG	1 cut(s)	1046
SchI	GAGTC	4 cut(s)	249, 394, 930, 1014
ScrFI	CCNGG	3 cut(s)	286, 621, 663
SdaI	CCTGCAGG	1 cut(s)	1046
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	498, 549
SfcI	CTRYAG	2 cut(s)	87, 1042
SfuI	TTCGAA	2 cut(s)	202, 273
SinI	GGWCC	2 cut(s)	659, 715
SphI	GCATGC	1 cut(s)	342
Sse8387I	CCTGCAGG	1 cut(s)	1046
Sse9I	AATT	7 cut(s)	9, 204, 551, 741, 818, 861, 980
StyD4I	CCNGG	3 cut(s)	284, 619, 661
StyI	CCWWGG	3 cut(s)	244, 493, 667
TaaI	ACNGT	4 cut(s)	47, 730, 1102, 1115
TaiI	ACGT	2 cut(s)	124, 470
TaqI	TCGA	4 cut(s)	202, 273, 642, 1023
TasI	AATT	7 cut(s)	9, 204, 551, 741, 818, 861, 980
TatI	WGTACW	1 cut(s)	2
TfiI	GAWTC	3 cut(s)	56, 107, 1048
Tru1I	TTAA	6 cut(s)	8, 297, 414, 732, 774, 839
Tru9I	TTAA	6 cut(s)	8, 297, 414, 732, 774, 839
TscAI	CASTG	4 cut(s)	364, 538, 931, 1105
TseFI	GTSAC	2 cut(s)	724, 1062
TseI	GCWGC	3 cut(s)	89, 474, 512
Tsp45I	GTSAC	2 cut(s)	724, 1062
TspGWI	ACGGA	3 cut(s)	315, 387, 813
TspRI	CASTG	4 cut(s)	364, 538, 931, 1105
Van91I	CCANNNNNTGG	1 cut(s)	1010
VpaK11BI	GGWCC	2 cut(s)	659, 715
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	1 cut(s)	980
XceI	RCATGY	2 cut(s)	96, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.