Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

6651713 .. 6653256

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G036300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTGAGAGTACATTAATTTTCAATGTCCTAAGCTTTGGAGCCAAGCCTAACGGTGTAATAGATTCTACACAAGCTTTTCTAGATGTATGGACTGCAGCATGTGCCTCCTCTGATTCCACTACTATACGTGTACCACAAGGGAGGTATTTGCTTCGCAATGCTATGGTTTTCAAAGGTGATAACTGCAAAAGCACAGATATTACTTTTCGAATTGATGGAACATTGATAGCTTCGTCTAATTACCGAGTCCTTGGCCAAGCTAACAACTGGCTAAGCTTCGAAGGAGTTACTGGTGTGTCCATTATCGGAGGTGCCCTTGACGCTAAAGGTACCTCCTTGTGGGCATGCAAGTTAGCTGGAAGCACTGATTGCCCCAACGGAGGAGCCACGAGTCTGAGTTTTACAAACTCCAAAAACATTAACATCAATGGACTAATGTCATTGAACAGCCAGATGTTCCACATTGTGATAAACGGCTGCCAAGATGTTCGCATCCAAGGGGTCAAAGTCAATGCAGCTGGAAATAGCCCAAACACTGATGGCATCCATGTCCAATTGTCAAGAAATGTTGCAATCTTCAACACCTCTATCAAAACTGGAGATGATTGTGTCTCGATTGGCCCCGGAACAAAGGACTTGTGGATCGAGCAAATAACTTGTGGTCCTGGCCATGGCATTAGCATAGGGAGTTTAGCCAAAGACTTGGAAGAGGAAGGGGTCCAAAATGTGACAGTTAAAAATGCACTTTTCAAGGGCACTCAAAATGGTTTGAGGATTAAGTCTTGGGCGAGGCCGAGCAACGGATTTGTTCAAGGTGTTCAATTTCTTGATGTCGTCATGTTTAATGTCCAAAATCCTATTGTAATAGACCAAAACTATTGCCCACACAACATCAACTGCCCTGCTCAGGTATCAGGTGTGAAAGTCAGTGATGTCGTGTATCGGAACATTCAAGGAACATCGGCTACGGCCATCGCAATAAAATTTGATTGTAGCTCAACAAATCCATGTAGTGGGATAAGACTCGAAAACGTGAGTTTGACCTGCAGGAATCAAGAGGTTCTGTCACTTTGTGCCAATGCAAATGGAAAGATTGTTGGCACTGTTCAACCAAACAATTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

377

Amino Acids

39.92

Weight (kDa)

7.89

Isoelectric Point (pI)

23.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1055
Acc65I	GGTACC	1 cut(s)	332
AccB1I	GGYRCC	2 cut(s)	314, 332
AccB7I	CCANNNNNTGG	1 cut(s)	1016
AclWI	GGATC	1 cut(s)	653
AcoI	YGGCCR	3 cut(s)	256, 670, 972
AcsI	RAATTY	1 cut(s)	986
AdeI	CACNNNGTG	2 cut(s)	469, 1076
AfaI	GTAC	3 cut(s)	13, 135, 334
AfiI	CCNNNNNNNGG	6 cut(s)	342, 383, 674, 803, 910, 1016
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	9 cut(s)	25, 175, 448, 583, 754, 815, 824, 956, 1112
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	8 cut(s)	36, 77, 233, 263, 279, 359, 521, 999
AluI	AGCT	8 cut(s)	36, 77, 233, 263, 279, 359, 521, 999
Alw26I	GTCTC	1 cut(s)	619
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	5 cut(s)	256, 622, 670, 794, 972
ApeKI	GCWGC	3 cut(s)	98, 480, 518
ApoI	RAATTY	1 cut(s)	986
AseI	ATTAAT	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	623, 665, 721
AsuC2I	CCSGG	1 cut(s)	627
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	2 cut(s)	211, 282
AvaII	GGWCC	2 cut(s)	665, 721
BaeGI	GKGCMC	2 cut(s)	319, 761
BalI	TGGCCA	2 cut(s)	258, 672
BanI	GGYRCC	2 cut(s)	314, 332
BauI	CACGAG	1 cut(s)	391
BbvI	GCAGC	3 cut(s)	110, 467, 530
BccI	CCATC	3 cut(s)	212, 536, 983
BceAI	ACGGC	2 cut(s)	493, 987
BciT130I	CCWGG	1 cut(s)	669
BcnI	CCSGG	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	2 cut(s)	96, 1048
BfuAI	ACCTGC	1 cut(s)	1055
BisI	GCNGC	3 cut(s)	99, 481, 519
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	3 cut(s)	100, 482, 520
Bme1390I	CCNGG	2 cut(s)	627, 669
Bme18I	GGWCC	2 cut(s)	665, 721
BmgT120I	GGNCC	3 cut(s)	623, 665, 721
BmiI	GGNNCC	6 cut(s)	43, 316, 334, 388, 625, 722
BmrFI	CCNGG	2 cut(s)	627, 669
BmsI	GCATC	2 cut(s)	504, 555
BoxI	GACNNNNGTC	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	2 cut(s)	32, 909
Bpu1102I	GCTNAGC	1 cut(s)	275
Bpu14I	TTCGAA	2 cut(s)	211, 282
BpuMI	CCSGG	1 cut(s)	627
BsaAI	YACGTR	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	253, 499, 625, 673
Bsc4I	CCNNNNNNNGG	6 cut(s)	342, 383, 674, 803, 910, 1016
Bse1I	ACTGG	3 cut(s)	275, 298, 604
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	4 cut(s)	253, 499, 625, 673
BseGI	GGATG	2 cut(s)	495, 546
BseLI	CCNNNNNNNGG	6 cut(s)	342, 383, 674, 803, 910, 1016
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	389, 923
BseNI	ACTGG	3 cut(s)	275, 298, 604
BseRI	GAGGAG	2 cut(s)	100, 399
BseSI	GKGCMC	2 cut(s)	319, 761
BseXI	GCAGC	3 cut(s)	110, 467, 530
BshFI	GGCC	5 cut(s)	258, 624, 672, 796, 974
BshNI	GGYRCC	2 cut(s)	314, 332
BsiSI	CCGG	1 cut(s)	627
BslI	CCNNNNNNNGG	6 cut(s)	342, 383, 674, 803, 910, 1016
BsmAI	GTCTC	1 cut(s)	619
BsnI	GGCC	5 cut(s)	258, 624, 672, 796, 974
Bsp119I	TTCGAA	2 cut(s)	211, 282
Bsp1286I	GDGCHC	2 cut(s)	319, 761
Bsp143I	GATC	1 cut(s)	645
Bsp1720I	GCTNAGC	1 cut(s)	275
Bsp19I	CCATGG	1 cut(s)	673
BspANI	GGCC	5 cut(s)	258, 624, 672, 796, 974
BspCNI	CTCAG	2 cut(s)	390, 922
BspLI	GGNNCC	6 cut(s)	43, 316, 334, 388, 625, 722
BspMAI	CTGCAG	2 cut(s)	100, 1052
BspMI	ACCTGC	1 cut(s)	1055
BspPI	GGATC	1 cut(s)	653
BspT104I	TTCGAA	2 cut(s)	211, 282
BspT107I	GGYRCC	2 cut(s)	314, 332
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	3 cut(s)	275, 298, 604
BssECI	CCNNGG	4 cut(s)	253, 499, 625, 673
BssMI	GATC	1 cut(s)	645
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	3 cut(s)	253, 499, 673
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	3 cut(s)	56, 736, 1108
Bst6I	CTCTTC	1 cut(s)	705
BstAPI	GCANNNNNTGC	2 cut(s)	104, 372
BstBAI	YACGTR	1 cut(s)	131
BstBI	TTCGAA	2 cut(s)	211, 282
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	5 cut(s)	6, 32, 275, 398, 909
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	2 cut(s)	495, 546
BstKTI	GATC	1 cut(s)	648
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	1 cut(s)	645
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 323, 372
BstNI	CCWGG	1 cut(s)	669
BstNSI	RCATGY	2 cut(s)	105, 351
BstPAI	GACNNNNGTC	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	625, 667
BstSFI	CTRYAG	2 cut(s)	96, 1048
BstSLI	GKGCMC	2 cut(s)	319, 761
BstV1I	GCAGC	3 cut(s)	110, 467, 530
BstXI	CCANNNNNNTGG	1 cut(s)	706
BsuRI	GGCC	5 cut(s)	258, 624, 672, 796, 974
BtgI	CCRYGG	1 cut(s)	673
BtgZI	GCGATG	1 cut(s)	961
BtsCI	GGATG	2 cut(s)	495, 546
BtsIMutI	CAGTG	4 cut(s)	366, 537, 937, 1104
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	3 cut(s)	623, 665, 721
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	3 cut(s)	12, 134, 333
CviAII	CATG	6 cut(s)	102, 348, 551, 674, 841, 1011
CviQI	GTAC	3 cut(s)	12, 134, 333
DdeI	CTNAG	5 cut(s)	6, 32, 275, 398, 909
DpnI	GATC	1 cut(s)	647
DpnII	GATC	1 cut(s)	645
DraIII	CACNNNGTG	2 cut(s)	469, 1076
EaeI	YGGCCR	3 cut(s)	256, 670, 972
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco130I	CCWWGG	3 cut(s)	253, 499, 673
Eco47I	GGWCC	2 cut(s)	665, 721
EcoRII	CCWGG	1 cut(s)	667
EcoT14I	CCWWGG	3 cut(s)	253, 499, 673
ErhI	CCWWGG	3 cut(s)	253, 499, 673
FaeI	CATG	6 cut(s)	105, 351, 554, 677, 844, 1014
FatI	CATG	6 cut(s)	101, 347, 550, 673, 840, 1010
Fnu4HI	GCNGC	3 cut(s)	99, 481, 519
FokI	GGATG	2 cut(s)	482, 533
Fsp4HI	GCNGC	3 cut(s)	99, 481, 519
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	3 cut(s)	99, 481, 519
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	5 cut(s)	258, 624, 672, 796, 974
HapII	CCGG	1 cut(s)	627
HgaI	GACGC	1 cut(s)	332
Hin1II	CATG	6 cut(s)	105, 351, 554, 677, 844, 1014
HindIII	AAGCTT	3 cut(s)	34, 75, 277
HinfI	GANTC	6 cut(s)	65, 116, 249, 394, 1026, 1054
HpaII	CCGG	1 cut(s)	627
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	4 cut(s)	115, 311, 399, 948
Hpy188III	TCNNGA	5 cut(s)	83, 564, 616, 830, 1058
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	278, 710
HpyCH4III	ACNGT	3 cut(s)	56, 736, 1108
HpyCH4IV	ACGT	2 cut(s)	130, 1035
HpyCH4V	TGCA	8 cut(s)	98, 189, 351, 518, 575, 746, 1050, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 323, 372
HpyF3I	CTNAG	5 cut(s)	6, 32, 275, 398, 909
HpySE526I	ACGT	2 cut(s)	130, 1035
Hsp92II	CATG	6 cut(s)	105, 351, 554, 677, 844, 1014
KpnI	GGTACC	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	645
LmnI	GCTCC	2 cut(s)	41, 386
Lsp1109I	GCAGC	3 cut(s)	110, 467, 530
LweI	GCATC	2 cut(s)	504, 555
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	2 cut(s)	130, 1035
MaeIII	GTNAC	3 cut(s)	289, 730, 1068
MalI	GATC	1 cut(s)	647
MboI	GATC	1 cut(s)	645
MboII	GAAGA	2 cut(s)	571, 722
MfeI	CAATTG	2 cut(s)	557, 1120
MhlI	GDGCHC	2 cut(s)	319, 761
MlsI	TGGCCA	2 cut(s)	258, 672
MluCI	AATT	7 cut(s)	18, 213, 241, 557, 824, 986, 1120
MluNI	TGGCCA	2 cut(s)	258, 672
MlyI	GAGTC	3 cut(s)	258, 403, 1020
Mox20I	TGGCCA	2 cut(s)	258, 672
MscI	TGGCCA	2 cut(s)	258, 672
MseI	TTAA	5 cut(s)	17, 423, 738, 780, 846
Msp20I	TGGCCA	2 cut(s)	258, 672
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	627
MspR9I	CCNGG	2 cut(s)	627, 669
MunI	CAATTG	2 cut(s)	557, 1120
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	3 cut(s)	104, 323, 372
NciI	CCSGG	1 cut(s)	627
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	1 cut(s)	645
NlaIII	CATG	6 cut(s)	105, 351, 554, 677, 844, 1014
NlaIV	GGNNCC	6 cut(s)	43, 316, 334, 388, 625, 722
NmeAIII	GCCGAG	1 cut(s)	822
NmuCI	GTSAC	2 cut(s)	730, 1068
NspI	RCATGY	2 cut(s)	105, 351
NspV	TTCGAA	2 cut(s)	211, 282
PaeI	GCATGC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	65, 116, 1054
PflMI	CCANNNNNTGG	1 cut(s)	1016
PkrI	GCNGC	3 cut(s)	100, 482, 520
PleI	GAGTC	3 cut(s)	257, 402, 1020
PpsI	GAGTC	3 cut(s)	257, 402, 1020
Ppu21I	YACGTR	1 cut(s)	131
PshAI	GACNNNNGTC	1 cut(s)	439
PshBI	ATTAAT	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	667
PspN4I	GGNNCC	6 cut(s)	43, 316, 334, 388, 625, 722
PspPI	GGNCC	3 cut(s)	623, 665, 721
PsrI	GAACNNNNNNTAC	2 cut(s)	952, 984
PstI	CTGCAG	2 cut(s)	100, 1052
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	3 cut(s)	13, 135, 334
RsaNI	GTAC	3 cut(s)	12, 134, 333
SaqAI	TTAA	5 cut(s)	17, 423, 738, 780, 846
SatI	GCNGC	3 cut(s)	99, 481, 519
Sau3AI	GATC	1 cut(s)	645
Sau96I	GGNCC	3 cut(s)	623, 665, 721
SbfI	CCTGCAGG	1 cut(s)	1052
SchI	GAGTC	3 cut(s)	258, 403, 1020
ScrFI	CCNGG	2 cut(s)	627, 669
SdaI	CCTGCAGG	1 cut(s)	1052
SduI	GDGCHC	2 cut(s)	319, 761
SfaNI	GCATC	2 cut(s)	504, 555
SfcI	CTRYAG	2 cut(s)	96, 1048
SfuI	TTCGAA	2 cut(s)	211, 282
SinI	GGWCC	2 cut(s)	665, 721
SphI	GCATGC	1 cut(s)	351
Sse8387I	CCTGCAGG	1 cut(s)	1052
Sse9I	AATT	7 cut(s)	18, 213, 241, 557, 824, 986, 1120
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	625, 667
StyI	CCWWGG	3 cut(s)	253, 499, 673
TaaI	ACNGT	3 cut(s)	56, 736, 1108
TaiI	ACGT	2 cut(s)	133, 1038
TaqI	TCGA	5 cut(s)	211, 282, 617, 648, 1029
TasI	AATT	7 cut(s)	18, 213, 241, 557, 824, 986, 1120
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	65, 116, 1054
Tru1I	TTAA	5 cut(s)	17, 423, 738, 780, 846
Tru9I	TTAA	5 cut(s)	17, 423, 738, 780, 846
TscAI	CASTG	4 cut(s)	373, 544, 937, 1111
TseFI	GTSAC	2 cut(s)	730, 1068
TseI	GCWGC	3 cut(s)	98, 480, 518
Tsp45I	GTSAC	2 cut(s)	730, 1068
TspGWI	ACGGA	2 cut(s)	396, 819
TspRI	CASTG	4 cut(s)	373, 544, 937, 1111
Van91I	CCANNNNNTGG	1 cut(s)	1016
VpaK11BI	GGWCC	2 cut(s)	665, 721
VspI	ATTAAT	1 cut(s)	17
XapI	RAATTY	1 cut(s)	986
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	2 cut(s)	105, 351
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.