Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

5895457 .. 5896991

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G031900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCTGAGGTTACAAGAAGTTGTTTTTGCAGAGTAGCACTACTCATCCTATATATCCTACACCAATCATGTGTTGCTAAGAGTACATTAATTTTCAATGTCCTAAGCTTTGGAGCCAAGCCTAACGGTGTAATAGATTCTACACAAGCTTTTCTGGATGTATGGACTGTAGCATGTGCCTCCTCTGATTCCACTACTATACGTGTACCAAAAGGGAGGTATTTGCTTCGCAATGCTATGGTTTTCAAAGGTGATAACTGCAAAAGCACAGATATTACTTTTCGAATTGATGGAACATTGATAGCTTCGTCTGACTACCGAGTCCTTGGCCAAGCCAACAACTGGCTAAGCTTCGAAGGAGTTACCGGTGTGTCCATTATCGGAGGTGCCCTTGACGCCAAAGGTACCTCCTTGTGGGCATGCAAGTTAGCTGGAAGCACTGATTGCCCCAACGGAGGAGCCACGAGTCTGAGTTTTACAAACTCCAAAAACATTAACATCAATGGACTAATGTCATTGAACAGCCAGATGTTCCACATTGTGATAAACGGCTGCCAAGATGTTCGCATCAAAGGGGTCAAAGTCAATGCAGCTGGAAATAGCCCAAACACTGATGGCATCCATGTCCAATTGTCAACAAATGTTGCAATCTTCAACACCTCTATCAAAACTGGAGATGATTGTGTCTCGATTGGCCCCGGAACAAAGGACTTGTGGATCGAGCAAATAACTTGTGGTCCTGGCCATGGTATTAGCATAGGGAGTTTAGCCAAAGACTTGGAAGAGGAAGGGGTCCAAAATGTGACAGTTAAAAATGCAATTTTCAAGGGTACTCAAAATGGTTTGAGGATTAAGTCTTGGGCAAGGCCGAGCAACGGATTTGTTCAAGGTGTTCAATTCCTTGATGTCGTAATGTTAAATGTCCAAAATCCTATCGTAATAGACCAAAACTACTGCCCACACAACATCAACTGCCCTGCTCAGGTATCAGGTGTGAGAGTCAGTGATGTCGTGTACCGGAACATTCAAGGAACATCAGCTACAGTCATTGCAATAAAATTTGATTGTAGCGCAACAAATCCATGTAGTGGGATAAGACTCGAAAATGTGAGTTTGACCTGCAGGAATCACGAGGTTCAGTCACATTGTGCCAATGCAAAGATTGTTGGCACTGTTCAACCAAACAGTTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

399

Amino Acids

42.47

Weight (kDa)

8.41

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	1127
Acc65I	GGTACC	1 cut(s)	404
AccB1I	GGYRCC	2 cut(s)	386, 404
AccB7I	CCANNNNNTGG	2 cut(s)	342, 1088
AclWI	GGATC	1 cut(s)	725
AcoI	YGGCCR	2 cut(s)	328, 742
AcsI	RAATTY	1 cut(s)	1058
AcyI	GRCGYC	1 cut(s)	396
AdeI	CACNNNGTG	2 cut(s)	541, 1148
AfaI	GTAC	5 cut(s)	85, 207, 406, 832, 1016
AfiI	CCNNNNNNNGG	7 cut(s)	342, 414, 455, 746, 875, 982, 1088
AflIII	ACRYGT	1 cut(s)	202
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	9 cut(s)	97, 247, 520, 655, 826, 887, 896, 1028, 1178
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	7 cut(s)	108, 149, 305, 351, 431, 593, 1040
AluI	AGCT	7 cut(s)	108, 149, 305, 351, 431, 593, 1040
Alw26I	GTCTC	1 cut(s)	691
AlwI	GGATC	1 cut(s)	725
AoxI	GGCC	4 cut(s)	328, 694, 742, 866
ApeKI	GCWGC	2 cut(s)	552, 590
ApoI	RAATTY	1 cut(s)	1058
AseI	ATTAAT	1 cut(s)	89
AsiGI	ACCGGT	1 cut(s)	365
Asp718I	GGTACC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	1073
AspS9I	GGNCC	3 cut(s)	695, 737, 793
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	1 cut(s)	263
AsuII	TTCGAA	2 cut(s)	283, 354
AvaII	GGWCC	2 cut(s)	737, 793
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	2 cut(s)	330, 744
BanI	GGYRCC	2 cut(s)	386, 404
BauI	CACGAG	2 cut(s)	463, 1130
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	539, 602
BccI	CCATC	2 cut(s)	284, 608
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	1 cut(s)	741
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	1 cut(s)	691
BfmI	CTRYAG	3 cut(s)	168, 1041, 1120
BfuAI	ACCTGC	1 cut(s)	1127
BisI	GCNGC	2 cut(s)	553, 591
BlpI	GCTNAGC	1 cut(s)	347
BlsI	GCNGC	2 cut(s)	554, 592
Bme1390I	CCNGG	2 cut(s)	699, 741
Bme18I	GGWCC	2 cut(s)	737, 793
BmgT120I	GGNCC	3 cut(s)	695, 737, 793
BmiI	GGNNCC	6 cut(s)	115, 388, 406, 460, 697, 794
BmrFI	CCNGG	2 cut(s)	699, 741
BmsI	GCATC	2 cut(s)	576, 627
BoxI	GACNNNNGTC	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	693
Bpu10I	CCTNAGC	3 cut(s)	6, 104, 981
Bpu1102I	GCTNAGC	1 cut(s)	347
Bpu14I	TTCGAA	2 cut(s)	283, 354
BpuMI	CCSGG	1 cut(s)	699
BsaAI	YACGTR	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	325, 697, 745
BsaWI	WCCGGW	2 cut(s)	365, 1017
Bsc4I	CCNNNNNNNGG	7 cut(s)	342, 414, 455, 746, 875, 982, 1088
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	347, 676
Bse3DI	GCAATG	2 cut(s)	238, 1047
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	3 cut(s)	325, 697, 745
BseGI	GGATG	3 cut(s)	45, 163, 618
BseLI	CCNNNNNNNGG	7 cut(s)	342, 414, 455, 746, 875, 982, 1088
BseMI	GCAATG	2 cut(s)	238, 1047
BseMII	CTCAG	2 cut(s)	461, 995
BseNI	ACTGG	2 cut(s)	347, 676
BseRI	GAGGAG	2 cut(s)	172, 471
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	539, 602
BshFI	GGCC	4 cut(s)	330, 696, 744, 868
BshNI	GGYRCC	2 cut(s)	386, 404
BshTI	ACCGGT	1 cut(s)	365
BsiSI	CCGG	3 cut(s)	366, 699, 1018
BslI	CCNNNNNNNGG	7 cut(s)	342, 414, 455, 746, 875, 982, 1088
BsmAI	GTCTC	1 cut(s)	691
BsnI	GGCC	4 cut(s)	330, 696, 744, 868
Bsp119I	TTCGAA	2 cut(s)	283, 354
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	1 cut(s)	717
Bsp1720I	GCTNAGC	1 cut(s)	347
Bsp19I	CCATGG	1 cut(s)	745
BspANI	GGCC	4 cut(s)	330, 696, 744, 868
BspCNI	CTCAG	2 cut(s)	462, 994
BspLI	GGNNCC	6 cut(s)	115, 388, 406, 460, 697, 794
BspMAI	CTGCAG	1 cut(s)	1124
BspMI	ACCTGC	1 cut(s)	1127
BspPI	GGATC	1 cut(s)	725
BspT104I	TTCGAA	2 cut(s)	283, 354
BspT107I	GGYRCC	2 cut(s)	386, 404
BsrDI	GCAATG	2 cut(s)	238, 1047
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	347, 676
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	325, 697, 745
BssMI	GATC	1 cut(s)	717
BssNI	GRCGYC	1 cut(s)	396
BssSI	CACGAG	2 cut(s)	463, 1130
BssT1I	CCWWGG	2 cut(s)	325, 745
Bst2BI	CACGAG	2 cut(s)	463, 1130
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	6 cut(s)	128, 169, 808, 1045, 1174, 1187
Bst6I	CTCTTC	1 cut(s)	777
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	203
BstBI	TTCGAA	2 cut(s)	283, 354
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	6 cut(s)	6, 78, 104, 347, 470, 981
BstDSI	CCRYGG	1 cut(s)	745
BstF5I	GGATG	3 cut(s)	45, 163, 618
BstHHI	GCGC	1 cut(s)	1073
BstKTI	GATC	1 cut(s)	720
BstMAI	GTCTC	1 cut(s)	691
BstMBI	GATC	1 cut(s)	717
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 444
BstNI	CCWGG	1 cut(s)	741
BstNSI	RCATGY	2 cut(s)	177, 423
BstPAI	GACNNNNGTC	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	697, 739
BstSFI	CTRYAG	3 cut(s)	168, 1041, 1120
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	539, 602
BstXI	CCANNNNNNTGG	1 cut(s)	778
BsuRI	GGCC	4 cut(s)	330, 696, 744, 868
BtgI	CCRYGG	1 cut(s)	745
BtsCI	GGATG	3 cut(s)	45, 163, 618
BtsIMutI	CAGTG	4 cut(s)	438, 609, 1009, 1170
BveI	ACCTGC	1 cut(s)	1127
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	1 cut(s)	1073
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	695, 737, 793
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	5 cut(s)	84, 206, 405, 831, 1015
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	6 cut(s)	69, 174, 420, 623, 746, 1083
CviQI	GTAC	5 cut(s)	84, 206, 405, 831, 1015
DdeI	CTNAG	6 cut(s)	6, 78, 104, 347, 470, 981
DpnI	GATC	1 cut(s)	719
DpnII	GATC	1 cut(s)	717
DraIII	CACNNNGTG	2 cut(s)	541, 1148
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	2 cut(s)	328, 742
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco130I	CCWWGG	2 cut(s)	325, 745
Eco47I	GGWCC	2 cut(s)	737, 793
EcoRII	CCWGG	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	325, 745
ErhI	CCWWGG	2 cut(s)	325, 745
FaeI	CATG	6 cut(s)	72, 177, 423, 626, 749, 1086
FatI	CATG	6 cut(s)	68, 173, 419, 622, 745, 1082
Fnu4HI	GCNGC	2 cut(s)	553, 591
FokI	GGATG	3 cut(s)	32, 170, 605
Fsp4HI	GCNGC	2 cut(s)	553, 591
GlaI	GCGC	1 cut(s)	1072
GluI	GCNGC	2 cut(s)	553, 591
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	4 cut(s)	330, 696, 744, 868
HapII	CCGG	3 cut(s)	366, 699, 1018
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	1 cut(s)	1073
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	6 cut(s)	72, 177, 423, 626, 749, 1086
Hin6I	GCGC	1 cut(s)	1071
HinP1I	GCGC	1 cut(s)	1071
HincII	GTYRAC	1 cut(s)	636
HindII	GTYRAC	1 cut(s)	636
HindIII	AAGCTT	3 cut(s)	106, 147, 349
HinfI	GANTC	7 cut(s)	137, 188, 321, 466, 999, 1098, 1126
HpaII	CCGG	3 cut(s)	366, 699, 1018
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	3 cut(s)	206, 636, 1015
Hpy188I	TCNGA	4 cut(s)	187, 313, 383, 471
Hpy188III	TCNNGA	3 cut(s)	155, 688, 1130
Hpy8I	GTNNAC	3 cut(s)	206, 636, 1015
HpyAV	CCTTC	2 cut(s)	350, 782
HpyCH4III	ACNGT	6 cut(s)	128, 169, 808, 1045, 1174, 1187
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	9 cut(s)	30, 261, 423, 590, 647, 818, 1052, 1122, 1157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 444
HpyF3I	CTNAG	6 cut(s)	6, 78, 104, 347, 470, 981
HpySE526I	ACGT	1 cut(s)	202
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	6 cut(s)	72, 177, 423, 626, 749, 1086
HspAI	GCGC	1 cut(s)	1071
KpnI	GGTACC	1 cut(s)	408
Kzo9I	GATC	1 cut(s)	717
LmnI	GCTCC	2 cut(s)	113, 458
Lsp1109I	GCAGC	2 cut(s)	539, 602
LweI	GCATC	2 cut(s)	576, 627
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	4 cut(s)	10, 361, 802, 1140
MalI	GATC	1 cut(s)	719
MboI	GATC	1 cut(s)	717
MboII	GAAGA	2 cut(s)	643, 794
MfeI	CAATTG	1 cut(s)	629
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	2 cut(s)	330, 744
MluCI	AATT	6 cut(s)	90, 285, 629, 819, 896, 1058
MluNI	TGGCCA	2 cut(s)	330, 744
MlyI	GAGTC	4 cut(s)	330, 475, 1008, 1092
Mox20I	TGGCCA	2 cut(s)	330, 744
MscI	TGGCCA	2 cut(s)	330, 744
MseI	TTAA	5 cut(s)	89, 495, 810, 852, 917
Msp20I	TGGCCA	2 cut(s)	330, 744
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	3 cut(s)	366, 699, 1018
MspR9I	CCNGG	2 cut(s)	699, 741
MunI	CAATTG	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	2 cut(s)	395, 444
NciI	CCSGG	1 cut(s)	699
NcoI	CCATGG	1 cut(s)	745
NdeII	GATC	1 cut(s)	717
NlaIII	CATG	6 cut(s)	72, 177, 423, 626, 749, 1086
NlaIV	GGNNCC	6 cut(s)	115, 388, 406, 460, 697, 794
NmeAIII	GCCGAG	1 cut(s)	894
NmuCI	GTSAC	2 cut(s)	802, 1140
NspI	RCATGY	2 cut(s)	177, 423
NspV	TTCGAA	2 cut(s)	283, 354
PaeI	GCATGC	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	137, 188, 1126
PflMI	CCANNNNNTGG	2 cut(s)	342, 1088
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	554, 592
PleI	GAGTC	4 cut(s)	329, 474, 1007, 1092
PpsI	GAGTC	4 cut(s)	329, 474, 1007, 1092
Ppu21I	YACGTR	1 cut(s)	203
PshAI	GACNNNNGTC	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	6 cut(s)	115, 388, 406, 460, 697, 794
PspPI	GGNCC	3 cut(s)	695, 737, 793
PsrI	GAACNNNNNNTAC	2 cut(s)	1024, 1056
PstI	CTGCAG	1 cut(s)	1124
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	5 cut(s)	85, 207, 406, 832, 1016
RsaNI	GTAC	5 cut(s)	84, 206, 405, 831, 1015
SaqAI	TTAA	5 cut(s)	89, 495, 810, 852, 917
SatI	GCNGC	2 cut(s)	553, 591
Sau3AI	GATC	1 cut(s)	717
Sau96I	GGNCC	3 cut(s)	695, 737, 793
SbfI	CCTGCAGG	1 cut(s)	1124
SchI	GAGTC	4 cut(s)	330, 475, 1008, 1092
ScrFI	CCNGG	2 cut(s)	699, 741
SdaI	CCTGCAGG	1 cut(s)	1124
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	2 cut(s)	576, 627
SfcI	CTRYAG	3 cut(s)	168, 1041, 1120
SfuI	TTCGAA	2 cut(s)	283, 354
SinI	GGWCC	2 cut(s)	737, 793
SphI	GCATGC	1 cut(s)	423
Sse8387I	CCTGCAGG	1 cut(s)	1124
Sse9I	AATT	6 cut(s)	90, 285, 629, 819, 896, 1058
StyD4I	CCNGG	2 cut(s)	697, 739
StyI	CCWWGG	2 cut(s)	325, 745
TaaI	ACNGT	6 cut(s)	128, 169, 808, 1045, 1174, 1187
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	5 cut(s)	283, 354, 689, 720, 1101
TasI	AATT	6 cut(s)	90, 285, 629, 819, 896, 1058
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	137, 188, 1126
Tru1I	TTAA	5 cut(s)	89, 495, 810, 852, 917
Tru9I	TTAA	5 cut(s)	89, 495, 810, 852, 917
TscAI	CASTG	4 cut(s)	445, 616, 1009, 1177
TseFI	GTSAC	2 cut(s)	802, 1140
TseI	GCWGC	2 cut(s)	552, 590
Tsp45I	GTSAC	2 cut(s)	802, 1140
TspGWI	ACGGA	2 cut(s)	468, 891
TspRI	CASTG	4 cut(s)	445, 616, 1009, 1177
Van91I	CCANNNNNTGG	2 cut(s)	342, 1088
VpaK11BI	GGWCC	2 cut(s)	737, 793
VspI	ATTAAT	1 cut(s)	89
XapI	RAATTY	1 cut(s)	1058
XceI	RCATGY	2 cut(s)	177, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.