Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000141.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Reverse (-)

84551 .. 86275

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000141.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgtctctattggccccagcaccaaggacttgtggatggaacgcatgtcatgcggacctggccaaggcattaggtaatggcattagcattgggagcctagtcaaagatttggaagaggaaggagtccaaaacgtaacggttaaaaatgcgatttttaagggtacccaaaatgggttgaggataaagtcttgggcgagacctagcagtgggtttatccaaggtgtccaattccttgatgtcgtaatggttagtgtacaaaaccccattgtaattgaccagaattactgcccacacaacctcaactgccctggtcaggtgtcaggtgtgaaaatcagtgacgtattgtaccagaacatacgaggcatatcagcaatagcagttgctgtaaaatttgattgcaacgcaacaaatccctgcactaagataagactcgaaaacgtcaatttgacttgccggaagcaagtagttcaatcaatttgtacaaatgtcaatggtcagacactgtcagagtgttggcactgttcagccgaacggccaagcagtggtagttgtatgctgggtctggccggcgcggcttggttgagcgtggttggcacaacaagttacagcgaccaggtggtgggagcagacggcgctgcactggcgcatgtaggagatggagtttgggcctgcttcaaaccctgctgggccttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

231

Amino Acids

24.48

Weight (kDa)

7.94

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	2 cut(s)	542, 619
AccII	CGCG	1 cut(s)	572
AciI	CCGC	2 cut(s)	53, 572
AcoI	YGGCCR	3 cut(s)	60, 533, 564
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	4 cut(s)	163, 255, 347, 481
AfiI	CCNNNNNNNGG	6 cut(s)	64, 171, 206, 313, 542, 619
AgsI	TTSAA	2 cut(s)	470, 676
AjnI	CCWGG	3 cut(s)	57, 307, 612
Alw26I	GTCTC	2 cut(s)	9, 190
AlwNI	CAGNNNCTG	2 cut(s)	383, 502
AoxI	GGCC	6 cut(s)	12, 60, 533, 564, 666, 687
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	1 cut(s)	389
Asp718I	GGTACC	1 cut(s)	161
AspLEI	GCGC	3 cut(s)	572, 635, 646
AspS9I	GGNCC	4 cut(s)	13, 55, 666, 687
AvaII	GGWCC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	2 cut(s)	30, 650
BceAI	ACGGC	2 cut(s)	548, 646
BciT130I	CCWGG	3 cut(s)	59, 309, 614
BcoDI	GTCTC	2 cut(s)	9, 190
BfaI	CTAG	2 cut(s)	98, 201
BfoI	RGCGCY	1 cut(s)	636
BglI	GCCNNNNNGGC	1 cut(s)	572
BisI	GCNGC	2 cut(s)	573, 636
BlsI	GCNGC	2 cut(s)	574, 637
Bme1390I	CCNGG	3 cut(s)	59, 309, 614
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	4 cut(s)	13, 55, 666, 687
BmiI	GGNNCC	3 cut(s)	15, 95, 163
BmrFI	CCNGG	3 cut(s)	59, 309, 614
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	4 cut(s)	23, 63, 217, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	6 cut(s)	64, 171, 206, 313, 542, 619
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	1 cut(s)	645
BseBI	CCWGG	3 cut(s)	59, 309, 614
BseDI	CCNNGG	4 cut(s)	23, 63, 217, 307
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	6 cut(s)	64, 171, 206, 313, 542, 619
BseNI	ACTGG	1 cut(s)	645
BseXI	GCAGC	1 cut(s)	622
BseYI	CCCAGC	3 cut(s)	16, 556, 684
BsgI	GTGCAG	2 cut(s)	400, 621
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	6 cut(s)	14, 62, 535, 566, 668, 689
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	454, 567
BslI	CCNNNNNNNGG	6 cut(s)	64, 171, 206, 313, 542, 619
BsmAI	GTCTC	2 cut(s)	9, 190
BsnI	GGCC	6 cut(s)	14, 62, 535, 566, 668, 689
Bso31I	GGTCTC	1 cut(s)	190
Bsp1407I	TGTACA	2 cut(s)	253, 479
BspACI	CCGC	2 cut(s)	53, 572
BspANI	GGCC	6 cut(s)	14, 62, 535, 566, 668, 689
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	3 cut(s)	15, 95, 163
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	566
BsrGI	TGTACA	2 cut(s)	253, 479
BsrI	ACTGG	1 cut(s)	645
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	4 cut(s)	23, 63, 217, 307
BssT1I	CCWWGG	3 cut(s)	23, 63, 217
Bst2UI	CCWGG	3 cut(s)	59, 309, 614
Bst4CI	ACNGT	3 cut(s)	139, 504, 521
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstAUI	TGTACA	2 cut(s)	253, 479
BstC8I	GCNNGC	2 cut(s)	568, 670
BstDEI	CTNAG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	572
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	3 cut(s)	572, 635, 646
BstMAI	GTCTC	2 cut(s)	9, 190
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 59, 93, 572, 591, 632, 641
BstNI	CCWGG	3 cut(s)	59, 309, 614
BstNSI	RCATGY	2 cut(s)	48, 650
BstSCI	CCNGG	3 cut(s)	57, 307, 612
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	1 cut(s)	622
BsuRI	GGCC	6 cut(s)	14, 62, 535, 566, 668, 689
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	2 cut(s)	211, 547
BtsIMutI	CAGTG	6 cut(s)	211, 340, 500, 517, 547, 638
Cac8I	GCNNGC	2 cut(s)	568, 670
CaiI	CAGNNNCTG	2 cut(s)	383, 502
CfoI	GCGC	3 cut(s)	572, 635, 646
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	4 cut(s)	13, 55, 666, 687
CsiI	ACCWGGT	1 cut(s)	612
Csp6I	GTAC	4 cut(s)	162, 254, 346, 480
CviAII	CATG	3 cut(s)	45, 50, 647
CviJI	RGCY	9 cut(s)	14, 62, 96, 527, 535, 566, 575, 668, 689
CviKI_1	RGCY	9 cut(s)	14, 62, 96, 527, 535, 566, 575, 668, 689
CviQI	GTAC	4 cut(s)	162, 254, 346, 480
DdeI	CTNAG	1 cut(s)	420
EaeI	YGGCCR	3 cut(s)	60, 533, 564
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	3 cut(s)	23, 63, 217
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoRII	CCWGG	3 cut(s)	57, 307, 612
EcoT14I	CCWWGG	3 cut(s)	23, 63, 217
ErhI	CCWWGG	3 cut(s)	23, 63, 217
FaeI	CATG	3 cut(s)	48, 53, 650
FaiI	YATR	6 cut(s)	46, 51, 356, 365, 554, 648
FatI	CATG	3 cut(s)	44, 49, 646
Fnu4HI	GCNGC	2 cut(s)	573, 636
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	573, 636
FspBI	CTAG	2 cut(s)	98, 201
GlaI	GCGC	3 cut(s)	571, 634, 645
GluI	GCNGC	2 cut(s)	573, 636
GsaI	CCCAGC	3 cut(s)	20, 560, 688
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	6 cut(s)	14, 62, 535, 566, 668, 689
HapII	CCGG	2 cut(s)	454, 567
HhaI	GCGC	3 cut(s)	572, 635, 646
Hin1II	CATG	3 cut(s)	48, 53, 650
Hin6I	GCGC	3 cut(s)	570, 633, 644
HinP1I	GCGC	3 cut(s)	570, 633, 644
HinfI	GANTC	2 cut(s)	123, 429
HpaII	CCGG	2 cut(s)	454, 567
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	2 cut(s)	498, 508
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	3 cut(s)	139, 504, 521
HpyCH4IV	ACGT	3 cut(s)	132, 339, 438
HpyCH4V	TGCA	3 cut(s)	399, 417, 638
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 59, 93, 572, 591, 632, 641
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	3 cut(s)	132, 339, 438
Hsp92II	CATG	3 cut(s)	48, 53, 650
HspAI	GCGC	3 cut(s)	570, 633, 644
KpnI	GGTACC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	566
KroNI	GCCGGC	1 cut(s)	568
LmnI	GCTCC	2 cut(s)	93, 623
Lsp1109I	GCAGC	1 cut(s)	622
MabI	ACCWGGT	1 cut(s)	612
MaeI	CTAG	2 cut(s)	98, 201
MaeII	ACGT	3 cut(s)	132, 339, 438
MaeIII	GTNAC	3 cut(s)	133, 335, 602
MboII	GAAGA	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	6 cut(s)	227, 270, 280, 389, 442, 474
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	2 cut(s)	132, 423
MnlI	CCTC	4 cut(s)	109, 171, 308, 353
Mox20I	TGGCCA	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	2 cut(s)	141, 156
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	2 cut(s)	454, 567
MspR9I	CCNGG	3 cut(s)	59, 309, 614
MvaI	CCWGG	3 cut(s)	59, 309, 614
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	7 cut(s)	50, 59, 93, 572, 591, 632, 641
NaeI	GCCGGC	1 cut(s)	568
NgoMIV	GCCGGC	1 cut(s)	566
NlaIII	CATG	3 cut(s)	48, 53, 650
NlaIV	GGNNCC	3 cut(s)	15, 95, 163
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	2 cut(s)	48, 650
PdiI	GCCGGC	1 cut(s)	568
PflFI	GACNNNGTC	1 cut(s)	502
PflMI	CCANNNNNTGG	2 cut(s)	542, 619
PkrI	GCNGC	2 cut(s)	574, 637
PleI	GAGTC	2 cut(s)	131, 423
PpsI	GAGTC	2 cut(s)	131, 423
Psp6I	CCWGG	3 cut(s)	57, 307, 612
PspFI	CCCAGC	3 cut(s)	16, 556, 684
PspGI	CCWGG	3 cut(s)	57, 307, 612
PspN4I	GGNNCC	3 cut(s)	15, 95, 163
PspPI	GGNCC	4 cut(s)	13, 55, 666, 687
PstNI	CAGNNNCTG	2 cut(s)	383, 502
PsyI	GACNNNGTC	1 cut(s)	502
RsaI	GTAC	4 cut(s)	163, 255, 347, 481
RsaNI	GTAC	4 cut(s)	162, 254, 346, 480
SaqAI	TTAA	2 cut(s)	141, 156
SatI	GCNGC	2 cut(s)	573, 636
Sau96I	GGNCC	4 cut(s)	13, 55, 666, 687
SchI	GAGTC	2 cut(s)	132, 423
ScrFI	CCNGG	3 cut(s)	59, 309, 614
SexAI	ACCWGGT	1 cut(s)	612
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	6 cut(s)	227, 270, 280, 389, 442, 474
SsiI	CCGC	2 cut(s)	53, 572
SspMI	CTAG	2 cut(s)	98, 201
StyD4I	CCNGG	3 cut(s)	57, 307, 612
StyI	CCWWGG	3 cut(s)	23, 63, 217
TaaI	ACNGT	3 cut(s)	139, 504, 521
TaiI	ACGT	3 cut(s)	135, 342, 441
TaqI	TCGA	1 cut(s)	432
TasI	AATT	6 cut(s)	227, 270, 280, 389, 442, 474
TatI	WGTACW	2 cut(s)	253, 479
TauI	GCSGC	1 cut(s)	575
Tru1I	TTAA	2 cut(s)	141, 156
Tru9I	TTAA	2 cut(s)	141, 156
TscAI	CASTG	6 cut(s)	211, 340, 507, 524, 547, 645
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	335
TspRI	CASTG	6 cut(s)	211, 340, 507, 524, 547, 645
Tth111I	GACNNNGTC	1 cut(s)	502
Van91I	CCANNNNNTGG	2 cut(s)	542, 619
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	2 cut(s)	48, 650
XspI	CTAG	2 cut(s)	98, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.