Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002177.1

Orthogroup ID

OG0001539

Physical Location & Seq

Genomic Coordinates Forward (+)

61721 .. 63220

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002177.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgattgagcttacaaggtgttttgccacggttgtattcctttttcttacaataatacaccaatcgtctgctgctgacgagactacaataacttcttacaatgtcctgagctttggagctaagcgtaatggtgtaacggattccacccaagcttttcttgatgcttgggctgctacctgtggagcctccgcggattcatctgagatatatataccgaaggggaggtatttgcttggcgctattgcctttaaaggtgactgcaaaagctcacatgtcacttttcggattgatggaacactagtggcttcgcctgattaccgagtactaggccaagctaacaactggttcagttttgaaggagttactggggtaaacattgtcggaggagcacttgatgctaagggttccgccttgtgggcttgcaaattaagtacggaaaccaccagctgtcctaatggagccacgactctgagttttacaaactcaaaagacattagagttgaaggactaatgtcattgaacagccaaatgtttcacattgtgataaatggctgccaggatgtactcattcaaggcgtcaaaattattgctgctggcaatagccctaacaccgacggcattcatgtccaattttccaaaaatgttgcaatcttcgacacctccatcaaaactggggacgactgtgtctctattggccctggggccaaggacttgtggatggaacgcatatcatgcggacctggccacggcattagcatagggagcctggccaaagacttggaagaggaaggagtacaaaacgtaacagttaaaaatgcaatttttaagggtacaacaaatgggctgaggatcaaatcttgggcaagacctagcaccgggtttgtccaaggtgttcgattccttgatgtcgtaatgcttaatgtccaaaatcccatcgtaattgaccagaattactgcctacacaacctcaactgtcctggtcaggtatctggtgtcaaagttagcgatatactgtaccagaacattcgaggcacatcgacaacagcagttgcagtaaaatttgattgcagtgcaacaaatccatgcagtgggataagactcgaaaatgtgaatttgacttgccggaagcaagtagttcaatcatactgtacgaatgtacatggaaagagtgttggtactattcaaccaagcagttgtttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

400

Amino Acids

42.68

Weight (kDa)

7.46

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22630
malus_domestica	MD12G1096500.v1.1
prunus_persica	Prupe.7G005500_v2.0.a1 Prupe.7G030700_v2.0.a1 Prupe.7G031900_v2.0.a1 Prupe.7G036000_v2.0.a1 Prupe.7G036300_v2.0.a1
pyrus_communis	pycom12g08540 pycom12g08550 pycom14g00130
rosa_chinensis	RchiOBHm_Chr2g0116641 RchiOBHm_Chr2g0116851 RchiOBHm_Chr2g0116891 RchiOBHm_Chr2g0116931 RchiOBHm_Chr2g0116951
rosa_laevigata	RLG00000018296 RLG00000018300 RLG00000018301 RLG00000018305 RLG00000018307 RLG00000018315 RLG00000032066
rosa_multiflora	Rmu_co8325457.1_g000001 Rmu_co8398115.1_g000001 Rmu_co8400735.1_g000001 Rmu_co8406615.1_g000001 Rmu_co8465195.1_g000001 Rmu_sc0002177.1_g000015 Rmu_sc0004942.1_g000013 Rmu_sc0011969.1_g000016 Rmu_sc0013102.1_g000010 Rmu_sc0016190.1_g000004 Rmu_ssc0000141.1_g000016 Rmu_ssc0000141.1_g000018 Rmu_ssc0000238.1_g000024 Rmu_ssc0000238.1_g000031
rosa_roxburghii	Rroxscaffold_2G00126930 Rroxscaffold_2G00126990 Rroxscaffold_6G00390380 Rroxscaffold_6G00390440 Rroxscaffold_6G00390460
rosa_rugosa	Rorug02G0208600 Rorug02G0208900 Rorug02G0208900
rosa_samantha	Rh2BG275400 Rh2BG275800 Rh2BG276100 Rh2BG276700
rosa_wichuraiana	Rw2G020840 Rw2G020860 Rw2G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	1088
AccII	CGCG	1 cut(s)	191
AciI	CCGC	4 cut(s)	189, 191, 408, 735
AclWI	GGATC	1 cut(s)	857
AcoI	YGGCCR	2 cut(s)	742, 768
AcsI	RAATTY	2 cut(s)	1058, 1111
AcyI	GRCGYC	1 cut(s)	576
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	9 cut(s)	324, 433, 564, 795, 832, 1016, 1150, 1158, 1177
AfiI	CCNNNNNNNGG	4 cut(s)	414, 746, 875, 1088
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	6 cut(s)	356, 503, 520, 572, 1139, 1184
AhlI	ACTAGT	1 cut(s)	298
AjnI	CCWGG	5 cut(s)	555, 697, 739, 765, 976
AluBI	AGCT	7 cut(s)	10, 111, 119, 152, 267, 335, 447
AluI	AGCT	7 cut(s)	10, 111, 119, 152, 267, 335, 447
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	74, 691
AlwI	GGATC	1 cut(s)	857
AoxI	GGCC	5 cut(s)	328, 694, 702, 742, 768
ApeKI	GCWGC	4 cut(s)	71, 170, 552, 590
ApoI	RAATTY	2 cut(s)	1058, 1111
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	3 cut(s)	695, 702, 737
AsuC2I	CCSGG	1 cut(s)	877
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	737
BalI	TGGCCA	2 cut(s)	744, 770
Bbv12I	GWGCWC	1 cut(s)	391
BbvCI	CCTCAGC	1 cut(s)	845
BbvI	GCAGC	4 cut(s)	58, 157, 539, 577
BccI	CCATC	4 cut(s)	284, 671, 712, 941
BceAI	ACGGC	2 cut(s)	631, 763
BciT130I	CCWGG	5 cut(s)	557, 699, 741, 767, 978
BcnI	CCSGG	1 cut(s)	877
BcoDI	GTCTC	2 cut(s)	74, 691
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	3 cut(s)	299, 326, 870
BfoI	RGCGCY	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	4 cut(s)	72, 171, 553, 591
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	4 cut(s)	73, 172, 554, 592
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	6 cut(s)	557, 699, 741, 767, 877, 978
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	3 cut(s)	695, 702, 737
BmiI	GGNNCC	5 cut(s)	184, 406, 460, 703, 764
BmrFI	CCNGG	6 cut(s)	557, 699, 741, 767, 877, 978
BmrI	ACTGGG	2 cut(s)	375, 681
BmsI	GCATC	2 cut(s)	151, 385
BmuI	ACTGGG	2 cut(s)	375, 681
BoxI	GACNNNNGTC	1 cut(s)	511
Bpu10I	CCTNAGC	3 cut(s)	107, 399, 845
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	877
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	7 cut(s)	27, 189, 697, 698, 705, 745, 886
Bsc4I	CCNNNNNNNGG	4 cut(s)	414, 746, 875, 1088
Bse1I	ACTGG	3 cut(s)	347, 370, 676
BseBI	CCWGG	5 cut(s)	557, 699, 741, 767, 978
BseDI	CCNNGG	7 cut(s)	27, 189, 697, 698, 705, 745, 886
BseGI	GGATG	2 cut(s)	565, 723
BseLI	CCNNNNNNNGG	4 cut(s)	414, 746, 875, 1088
BseMII	CTCAG	4 cut(s)	98, 192, 461, 836
BseNI	ACTGG	3 cut(s)	347, 370, 676
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	4 cut(s)	58, 157, 539, 577
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	5 cut(s)	330, 696, 704, 744, 770
BsiHKAI	GWGCWC	1 cut(s)	391
BsiSI	CCGG	2 cut(s)	876, 1123
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	4 cut(s)	414, 746, 875, 1088
BsmAI	GTCTC	2 cut(s)	74, 691
BsmFI	GGGAC	1 cut(s)	689
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	5 cut(s)	330, 696, 704, 744, 770
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp1407I	TGTACA	1 cut(s)	1156
Bsp143I	GATC	1 cut(s)	849
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	4 cut(s)	189, 191, 408, 735
BspANI	GGCC	5 cut(s)	330, 696, 704, 744, 770
BspCNI	CTCAG	4 cut(s)	99, 193, 462, 837
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	5 cut(s)	184, 406, 460, 703, 764
BspPI	GGATC	1 cut(s)	857
BsrGI	TGTACA	1 cut(s)	1156
BsrI	ACTGG	3 cut(s)	347, 370, 676
BssECI	CCNNGG	7 cut(s)	27, 189, 697, 698, 705, 745, 886
BssMI	GATC	1 cut(s)	849
BssNI	GRCGYC	1 cut(s)	576
BssT1I	CCWWGG	2 cut(s)	705, 886
Bst2UI	CCWGG	5 cut(s)	557, 699, 741, 767, 978
Bst4CI	ACNGT	6 cut(s)	31, 683, 808, 974, 1014, 1148
Bst6I	CTCTTC	1 cut(s)	777
BstACI	GRCGYC	1 cut(s)	576
BstAPI	GCANNNNNTGC	2 cut(s)	395, 732
BstAUI	TGTACA	1 cut(s)	1156
BstC8I	GCNNGC	2 cut(s)	421, 595
BstDEI	CTNAG	6 cut(s)	107, 120, 201, 399, 470, 845
BstDSI	CCRYGG	3 cut(s)	27, 189, 745
BstF5I	GGATG	2 cut(s)	565, 723
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	852
BstMAI	GTCTC	2 cut(s)	74, 691
BstMBI	GATC	1 cut(s)	849
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 395, 416, 732, 741, 762
BstNI	CCWGG	5 cut(s)	557, 699, 741, 767, 978
BstNSI	RCATGY	1 cut(s)	275
BstPAI	GACNNNNGTC	1 cut(s)	511
BstSCI	CCNGG	6 cut(s)	555, 697, 739, 765, 875, 976
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	4 cut(s)	58, 157, 539, 577
BstXI	CCANNNNNNTGG	1 cut(s)	778
BsuRI	GGCC	5 cut(s)	330, 696, 704, 744, 770
BtgI	CCRYGG	3 cut(s)	27, 189, 745
BtsCI	GGATG	2 cut(s)	565, 723
BtsI	GCAGTG	2 cut(s)	1075, 1093
BtsIMutI	CAGTG	2 cut(s)	1075, 1093
Cac8I	GCNNGC	2 cut(s)	421, 595
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	695, 702, 737
Cfr42I	CCGCGG	1 cut(s)	192
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	9 cut(s)	323, 432, 563, 794, 831, 1015, 1149, 1157, 1176
CviAII	CATG	5 cut(s)	272, 623, 732, 1083, 1160
CviQI	GTAC	9 cut(s)	323, 432, 563, 794, 831, 1015, 1149, 1157, 1176
DdeI	CTNAG	6 cut(s)	107, 120, 201, 399, 470, 845
DpnI	GATC	1 cut(s)	851
DpnII	GATC	1 cut(s)	849
DraI	TTTAAA	1 cut(s)	250
DraIII	CACNNNGTG	1 cut(s)	541
DrdI	GACNNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	683
EaeI	YGGCCR	2 cut(s)	742, 768
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
EciI	GGCGGA	1 cut(s)	397
Eco130I	CCWWGG	2 cut(s)	705, 886
Eco47I	GGWCC	1 cut(s)	737
EcoRII	CCWGG	5 cut(s)	555, 697, 739, 765, 976
EcoT14I	CCWWGG	2 cut(s)	705, 886
ErhI	CCWWGG	2 cut(s)	705, 886
FaeI	CATG	5 cut(s)	275, 626, 735, 1086, 1163
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	5 cut(s)	271, 622, 731, 1082, 1159
Fnu4HI	GCNGC	4 cut(s)	72, 171, 553, 591
FokI	GGATG	2 cut(s)	572, 730
Fsp4HI	GCNGC	4 cut(s)	72, 171, 553, 591
FspBI	CTAG	3 cut(s)	299, 326, 870
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	4 cut(s)	72, 171, 553, 591
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	5 cut(s)	330, 696, 704, 744, 770
HapII	CCGG	2 cut(s)	876, 1123
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	5 cut(s)	275, 626, 735, 1086, 1163
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	5 cut(s)	140, 194, 466, 897, 1098
HpaII	CCGG	2 cut(s)	876, 1123
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	4 cut(s)	202, 285, 383, 471
Hpy188III	TCNNGA	2 cut(s)	106, 158
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	4 cut(s)	211, 350, 497, 782
HpyCH4III	ACNGT	6 cut(s)	31, 683, 808, 974, 1014, 1148
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	8 cut(s)	261, 423, 647, 818, 1052, 1068, 1073, 1086
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 395, 416, 732, 741, 762
HpyF3I	CTNAG	6 cut(s)	107, 120, 201, 399, 470, 845
HpySE526I	ACGT	1 cut(s)	801
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	5 cut(s)	275, 626, 735, 1086, 1163
HspAI	GCGC	1 cut(s)	237
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	849
LmnI	GCTCC	5 cut(s)	116, 182, 386, 458, 762
Lsp1109I	GCAGC	4 cut(s)	58, 157, 539, 577
LweI	GCATC	2 cut(s)	151, 385
MaeI	CTAG	3 cut(s)	299, 326, 870
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	5 cut(s)	133, 254, 274, 361, 802
MalI	GATC	1 cut(s)	851
MboI	GATC	1 cut(s)	849
MboII	GAAGA	2 cut(s)	643, 794
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	2 cut(s)	744, 770
MluCI	AATT	8 cut(s)	425, 582, 629, 819, 939, 949, 1058, 1111
MluNI	TGGCCA	2 cut(s)	744, 770
MlyI	GAGTC	2 cut(s)	460, 1092
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	8 cut(s)	196, 216, 377, 670, 778, 840, 977, 1022
Mox20I	TGGCCA	2 cut(s)	744, 770
MscI	TGGCCA	2 cut(s)	744, 770
MseI	TTAA	5 cut(s)	249, 428, 810, 825, 918
Msp20I	TGGCCA	2 cut(s)	744, 770
MspA1I	CMGCKG	2 cut(s)	191, 447
MspI	CCGG	2 cut(s)	876, 1123
MspR9I	CCNGG	6 cut(s)	557, 699, 741, 767, 877, 978
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	5 cut(s)	557, 699, 741, 767, 978
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	6 cut(s)	170, 395, 416, 732, 741, 762
NciI	CCSGG	1 cut(s)	877
NdeII	GATC	1 cut(s)	849
NlaIII	CATG	5 cut(s)	275, 626, 735, 1086, 1163
NlaIV	GGNNCC	5 cut(s)	184, 406, 460, 703, 764
NmuCI	GTSAC	2 cut(s)	254, 274
NspI	RCATGY	1 cut(s)	275
PasI	CCCWGGG	1 cut(s)	698
PciI	ACATGT	1 cut(s)	271
PctI	GAATGC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	140, 194, 897
PflFI	GACNNNGTC	1 cut(s)	683
PflMI	CCANNNNNTGG	1 cut(s)	1088
PkrI	GCNGC	4 cut(s)	73, 172, 554, 592
PleI	GAGTC	2 cut(s)	460, 1092
PpsI	GAGTC	2 cut(s)	460, 1092
PscI	ACATGT	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	511
Psp6I	CCWGG	5 cut(s)	555, 697, 739, 765, 976
PspGI	CCWGG	5 cut(s)	555, 697, 739, 765, 976
PspN4I	GGNNCC	5 cut(s)	184, 406, 460, 703, 764
PspPI	GGNCC	3 cut(s)	695, 702, 737
PsyI	GACNNNGTC	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	447
RsaI	GTAC	9 cut(s)	324, 433, 564, 795, 832, 1016, 1150, 1158, 1177
RsaNI	GTAC	9 cut(s)	323, 432, 563, 794, 831, 1015, 1149, 1157, 1176
SacII	CCGCGG	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	249, 428, 810, 825, 918
SatI	GCNGC	4 cut(s)	72, 171, 553, 591
Sau3AI	GATC	1 cut(s)	849
Sau96I	GGNCC	3 cut(s)	695, 702, 737
ScaI	AGTACT	1 cut(s)	324
SchI	GAGTC	2 cut(s)	460, 1092
ScrFI	CCNGG	6 cut(s)	557, 699, 741, 767, 877, 978
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	2 cut(s)	151, 385
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	737
SpeI	ACTAGT	1 cut(s)	298
Sse9I	AATT	8 cut(s)	425, 582, 629, 819, 939, 949, 1058, 1111
SsiI	CCGC	4 cut(s)	189, 191, 408, 735
SspMI	CTAG	3 cut(s)	299, 326, 870
StyD4I	CCNGG	6 cut(s)	555, 697, 739, 765, 875, 976
StyI	CCWWGG	2 cut(s)	705, 886
TaaI	ACNGT	6 cut(s)	31, 683, 808, 974, 1014, 1148
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	5 cut(s)	654, 895, 1027, 1037, 1101
TasI	AATT	8 cut(s)	425, 582, 629, 819, 939, 949, 1058, 1111
TatI	WGTACW	4 cut(s)	322, 562, 793, 1156
TfiI	GAWTC	3 cut(s)	140, 194, 897
Tru1I	TTAA	5 cut(s)	249, 428, 810, 825, 918
Tru9I	TTAA	5 cut(s)	249, 428, 810, 825, 918
TscAI	CASTG	2 cut(s)	1075, 1093
TseFI	GTSAC	2 cut(s)	254, 274
TseI	GCWGC	4 cut(s)	71, 170, 552, 590
Tsp45I	GTSAC	2 cut(s)	254, 274
TspDTI	ATGAA	2 cut(s)	186, 611
TspGWI	ACGGA	2 cut(s)	152, 449
TspRI	CASTG	2 cut(s)	1075, 1093
Tth111I	GACNNNGTC	1 cut(s)	683
Van91I	CCANNNNNTGG	1 cut(s)	1088
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	2 cut(s)	1058, 1111
XceI	RCATGY	1 cut(s)	275
XspI	CTAG	3 cut(s)	299, 326, 870
ZrmI	AGTACT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.