Rorug02G0208600

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
19542077 .. 19545954
3878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0208600.1

Sequence Viewer

Length: 1155 bp
ATGGAGCTGATTAAAGATGCATTTGATCGTGTTACAAAGAAACAAAAGCTATCATGCTCCAAAACTCAAGAAGTTCTTGATCTGATTGACCAAGAAATCAAGCAGACGTTACAGAAAATACAATCATCTAATGAGTGTGAATCTCAGGTTGATTTGAAATCTACCATTGCTGAACTCAAAAACAAGTTAAAAGACATTGCACCACTCAGTCAGACAGAAAGCATCCAGAAGGAACTGAATCTGGCATTGAGCAAGCATCCAAAGCTTCTCGAGAAAACCTTCAATCCTGATATAGCCAAGGCTTATAGAAATGTTGAGTTTGATGCTCACACAGTTAATGAGATAATAGGCAGTCATTTCTATAGGCAGGGACTTTTCGAACTTGGAGACTGTTTCTTAAGTGAAGCTGAAGAACCAGAATCTGCAGCTGCTATGAAATCTCAGTTTCAGGAGATGTTTCAGATAGTTGAAGCAATGAAATGTCAGAACCTAGAGCCAGCACTGAAGTGGGCCATCGGTAACTCTGATAAACTCAAACCAAATGGATCAGACCTACTGCTGAAACTTCACAGTCTACAGTTCGTGGGTATATTGCAGAAGGGAGACAGAGATGGAGCTCTTCATTATGCCAGAACTTACCTTGCTCCTTTTGCTTCTGACCATATGCCTGAAATTCAGAAGCTTATGGTATGTCTTCTATGGACTGGAAAGCTTGATAACTTACCATACTCTCACCTATTATCCAAGGCCAATTGGGACAAAGTGGCTGGGGAGCTAACCAGGCAATTCTGCAATATTCTTGGCCAGTCTTACGAGAGCCCATTGAGCATGACTATAGCTGCTGGGGTCCAGGGGTTGCCACCTCTTCTCAAGTTTATGAATGTAATGGTAGGGAAGAGAAATGAATGGCAAACTATGAAGCAGTTGCCTGTGCCAGTGGAGTTAGACCGTGAGTTTCAGTTCCATTCTATTTTTGTTTGTCCAGTCTCCAAGGAACAAGCAACCGATGAAAATCCACCTATGTTGATGTCATGTGGACATGTGCTTTGCAAGCAGTCTATTACAAAGATGTCAAAGAACAGCACAAAAACCTTCAAATGCCCTTACTGTCCTTCAGATATTGATTCAGCACAGTGTAGGCAGCTCCATTTCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

384

Amino Acids

43.49

Weight (kDa)

6.57

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 148 - 287 6.6e-35 CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX PF13445 327 - 368 2.3e-10 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09930
fragaria_vesca FvH4_1g22620
malus_domestica MD01G1020400.v1.1 MD01G1020500.v1.1 MD15G1331800.v1.1
prunus_persica Prupe.6G171800_v2.0.a1 Prupe.6G171800_v2.0.a1
pyrus_communis pycom15g29330
rosa_chinensis RchiOBHm_Chr1g0349811 RchiOBHm_Chr2g0116631 RchiOBHm_Chr2g0116661 RchiOBHm_Chr2g0116701 RchiOBHm_Chr2g0116721 RchiOBHm_Chr2g0116821 RchiOBHm_Chr2g0116831 RchiOBHm_Chr2g0137191 RchiOBHm_Chr4g0436571 RchiOBHm_Chr5g0033691 RchiOBHm_Chr5g0080211 RchiOBHm_Chr7g0224491
rosa_laevigata RLG00000001144 RLG00000001242 RLG00000008715 RLG00000011571 RLG00000013376 RLG00000018295 RLG00000018297 RLG00000018299 RLG00000018304 RLG00000018340 RLG00000019297
rosa_multiflora Rmu_co8219302.1_g000001 Rmu_co8228065.1_g000001 Rmu_co8391111.1_g000001 Rmu_sc0001896.1_g000033 Rmu_sc0003126.1_g000001 Rmu_sc0004191.1_g000001 Rmu_sc0004942.1_g000016 Rmu_sc0005450.1_g000015 Rmu_sc0010198.1_g000002 Rmu_sc0011574.1_g000003 Rmu_sc0020362.1_g000001 Rmu_sc0020362.1_g000002 Rmu_sc0026531.1_g000001
rosa_roxburghii Rroxscaffold_1G00010030 Rroxscaffold_1G00018300 Rroxscaffold_1G00021420 Rroxscaffold_2G00089320 Rroxscaffold_2G00126980 Rroxscaffold_2G00127000 Rroxscaffold_2G00144860 Rroxscaffold_6G00390340 Rroxscaffold_6G00390350 Rroxscaffold_6G00394730 Rroxscaffold_6G00423750
rosa_rugosa Rorug01G0049700 Rorug01G0284700 Rorug02G0208300 Rorug02G0208400 Rorug02G0208500 Rorug02G0208600 Rorug06G0216100 Rorug06G0216200 Rorug06G0216300
rosa_samantha Rh1AG026000 Rh1AG205600 Rh1AG270100 Rh1CG024200 Rh1DG146900 Rh1DG206100 Rh2AG263300 Rh2AG263500 Rh2AG263700 Rh2AG264100 Rh2AG264200 Rh2AG264800 Rh2BG275100 Rh2BG275200 Rh2BG275300 Rh2BG275500 Rh2BG278500 Rh2CG297300 Rh2CG302200 Rh2DG271500 Rh2DG271600 Rh2DG272100 Rh2DG290100 Rh2DG290200 Rh2DG290700 Rh3AG071300 Rh3CG072500 Rh5AG478400 Rh6AG079600 Rh6AG220800 Rh6BG131400 Rh6DG116900 Rh6DG391500 Rh7AG379600 Rh7CG399100 Rh7CG429600
rosa_wichuraiana Rw2G020730 Rw2G020760 Rw2G051970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 574
AclWI GGATC 1 cut(s) 553
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 1 cut(s) 672
AcuI CTGAAG 3 cut(s) 429, 524, 1098
AflII CTTAAG 1 cut(s) 397
AflIII ACRYGT 1 cut(s) 1039
AgsI TTSAA 4 cut(s) 157, 283, 470, 1096
AjnI CCWGG 2 cut(s) 779, 849
AleI CACNNNNGTG 1 cut(s) 505
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 3 cut(s) 381, 597, 991
AlwI GGATC 1 cut(s) 553
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 3 cut(s) 510, 747, 802
ApeKI GCWGC 4 cut(s) 425, 428, 839, 1141
ApoI RAATTY 1 cut(s) 672
ArsI GACNNNNNNTTYG 2 cut(s) 1029, 1061
Asp700I GAANNNNTTC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 510, 847
AsuHPI GGTGA 1 cut(s) 725
AsuII TTCGAA 1 cut(s) 378
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 847
BalI TGGCCA 1 cut(s) 804
BanII GRGCYC 2 cut(s) 619, 821
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 3 cut(s) 415, 437, 826
BccI CCATC 2 cut(s) 521, 605
BciT130I CCWGG 2 cut(s) 781, 851
BcoDI GTCTC 3 cut(s) 381, 597, 991
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 4 cut(s) 361, 423, 575, 834
BfrI CTTAAG 1 cut(s) 397
BisI GCNGC 4 cut(s) 426, 429, 840, 1142
BlsI GCNGC 4 cut(s) 427, 430, 841, 1143
Bme1390I CCNGG 2 cut(s) 781, 851
Bme18I GGWCC 1 cut(s) 847
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 510, 847
BmiI GGNNCC 1 cut(s) 848
BmrFI CCNGG 2 cut(s) 781, 851
BmsI GCATC 4 cut(s) 7, 231, 265, 313
BpiI GAAGAC 1 cut(s) 686
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 2 cut(s) 51, 854
BsaBI GATNNNNATC 1 cut(s) 1011
BsaJI CCNNGG 4 cut(s) 297, 744, 850, 990
Bse1I ACTGG 4 cut(s) 709, 805, 935, 983
Bse3DI GCAATG 3 cut(s) 165, 195, 480
Bse8I GATNNNNATC 1 cut(s) 1011
BseBI CCWGG 2 cut(s) 781, 851
BseDI CCNNGG 4 cut(s) 297, 744, 850, 990
BseGI GGATG 2 cut(s) 222, 256
BseJI GATNNNNATC 1 cut(s) 1011
BseMI GCAATG 3 cut(s) 165, 195, 480
BseMII CTCAG 3 cut(s) 158, 220, 455
BseNI ACTGG 4 cut(s) 709, 805, 935, 983
BseXI GCAGC 3 cut(s) 415, 437, 826
BseYI CCCAGC 2 cut(s) 767, 842
BshFI GGCC 3 cut(s) 512, 749, 804
BsiHKAI GWGCWC 1 cut(s) 619
BsiHKCI CYCGRG 1 cut(s) 269
BslFI GGGAC 2 cut(s) 384, 770
BsmAI GTCTC 3 cut(s) 381, 597, 991
BsmFI GGGAC 2 cut(s) 384, 770
BsnI GGCC 3 cut(s) 512, 749, 804
BsoBI CYCGRG 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 619, 821
Bsp143I GATC 3 cut(s) 25, 79, 545
BspANI GGCC 3 cut(s) 512, 749, 804
BspCNI CTCAG 3 cut(s) 157, 219, 454
BspLI GGNNCC 1 cut(s) 848
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 1 cut(s) 553
BspQI GCTCTTC 1 cut(s) 624
BspT104I TTCGAA 1 cut(s) 378
BspTI CTTAAG 1 cut(s) 397
BsrDI GCAATG 3 cut(s) 165, 195, 480
BsrI ACTGG 4 cut(s) 709, 805, 935, 983
BssECI CCNNGG 4 cut(s) 297, 744, 850, 990
BssMI GATC 3 cut(s) 25, 79, 545
BssT1I CCWWGG 3 cut(s) 297, 744, 990
Bst2UI CCWGG 2 cut(s) 781, 851
Bst4CI ACNGT 7 cut(s) 334, 392, 572, 579, 950, 1109, 1134
Bst6I CTCTTC 3 cut(s) 624, 870, 890
BstAFI CTTAAG 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 254, 498, 1052
BstDEI CTNAG 3 cut(s) 144, 206, 441
BstF5I GGATG 2 cut(s) 222, 256
BstKTI GATC 3 cut(s) 28, 82, 548
BstMAI GTCTC 3 cut(s) 381, 597, 991
BstMBI GATC 3 cut(s) 25, 79, 545
BstMWI GCNNNNNNNGC 5 cut(s) 262, 650, 781, 825, 1051
BstNI CCWGG 2 cut(s) 781, 851
BstNSI RCATGY 1 cut(s) 1043
BstSCI CCNGG 2 cut(s) 779, 849
BstSFI CTRYAG 4 cut(s) 361, 423, 575, 834
BstV1I GCAGC 3 cut(s) 415, 437, 826
BstV2I GAAGAC 1 cut(s) 686
BsuRI GGCC 3 cut(s) 512, 749, 804
BtsCI GGATG 2 cut(s) 222, 256
BtsIMutI CAGTG 3 cut(s) 500, 942, 1139
Cac8I GCNNGC 3 cut(s) 254, 498, 1052
CaiI CAGNNNCTG 1 cut(s) 422
Cfr13I GGNCC 2 cut(s) 510, 847
CspCI CAANNNNNGTGG 2 cut(s) 1005, 1040
CviAII CATG 4 cut(s) 54, 829, 1032, 1040
DdeI CTNAG 3 cut(s) 144, 206, 441
DpnI GATC 3 cut(s) 27, 81, 547
DpnII GATC 3 cut(s) 25, 79, 545
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 3 cut(s) 624, 870, 890
EarI CTCTTC 3 cut(s) 624, 870, 890
Ecl136II GAGCTC 1 cut(s) 617
Eco130I CCWWGG 3 cut(s) 297, 744, 990
Eco24I GRGCYC 2 cut(s) 619, 821
Eco47I GGWCC 1 cut(s) 847
Eco53kI GAGCTC 1 cut(s) 617
Eco57I CTGAAG 3 cut(s) 429, 524, 1098
Eco88I CYCGRG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 617
EcoRII CCWGG 2 cut(s) 779, 849
EcoT14I CCWWGG 3 cut(s) 297, 744, 990
EcoT22I ATGCAT 1 cut(s) 22
EcoT38I GRGCYC 2 cut(s) 619, 821
ErhI CCWWGG 3 cut(s) 297, 744, 990
FaeI CATG 4 cut(s) 57, 832, 1035, 1043
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 2 cut(s) 384, 770
FatI CATG 4 cut(s) 53, 828, 1031, 1039
FauNDI CATATG 1 cut(s) 663
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 4 cut(s) 426, 429, 840, 1142
FokI GGATG 2 cut(s) 209, 243
FriOI GRGCYC 2 cut(s) 619, 821
Fsp4HI GCNGC 4 cut(s) 426, 429, 840, 1142
FspBI CTAG 1 cut(s) 491
GluI GCNGC 4 cut(s) 426, 429, 840, 1142
GsaI CCCAGC 2 cut(s) 771, 846
HaeIII GGCC 3 cut(s) 512, 749, 804
Hin1II CATG 4 cut(s) 57, 832, 1035, 1043
HindIII AAGCTT 3 cut(s) 263, 680, 710
HinfI GANTC 4 cut(s) 140, 238, 419, 1124
HphI GGTGA 1 cut(s) 725
Hpy166II GTNNAC 2 cut(s) 575, 1037
Hpy188III TCNNGA 7 cut(s) 68, 77, 226, 269, 271, 287, 449
Hpy8I GTNNAC 2 cut(s) 575, 1037
HpyAV CCTTC 5 cut(s) 223, 289, 592, 1102, 1122
HpyCH4III ACNGT 7 cut(s) 334, 392, 572, 579, 950, 1109, 1134
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 6 cut(s) 20, 200, 425, 595, 792, 1050
HpyF10VI GCNNNNNNNGC 5 cut(s) 262, 650, 781, 825, 1051
HpyF3I CTNAG 3 cut(s) 144, 206, 441
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 4 cut(s) 57, 832, 1035, 1043
Kzo9I GATC 3 cut(s) 25, 79, 545
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 6 cut(s) 4, 62, 614, 649, 772, 1149
Lsp1109I GCAGC 3 cut(s) 415, 437, 826
LweI GCATC 4 cut(s) 7, 231, 265, 313
MaeI CTAG 1 cut(s) 491
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 31, 108, 518
MalI GATC 3 cut(s) 27, 81, 547
MboI GATC 3 cut(s) 25, 79, 545
MboII GAAGA 5 cut(s) 422, 611, 686, 857, 907
MfeI CAATTG 1 cut(s) 751
MhlI GDGCHC 2 cut(s) 619, 821
MlsI TGGCCA 1 cut(s) 804
MluCI AATT 3 cut(s) 672, 751, 785
MluNI TGGCCA 1 cut(s) 804
MnlI CCTC 1 cut(s) 873
Mox20I TGGCCA 1 cut(s) 804
Mph1103I ATGCAT 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 278
MscI TGGCCA 1 cut(s) 804
MseI TTAA 4 cut(s) 12, 188, 336, 398
MslI CAYNNNNRTG 1 cut(s) 505
Msp20I TGGCCA 1 cut(s) 804
MspA1I CMGCKG 1 cut(s) 428
MspCI CTTAAG 1 cut(s) 397
MspR9I CCNGG 2 cut(s) 781, 851
MunI CAATTG 1 cut(s) 751
MvaI CCWGG 2 cut(s) 781, 851
MwoI GCNNNNNNNGC 5 cut(s) 262, 650, 781, 825, 1051
NdeI CATATG 1 cut(s) 663
NdeII GATC 3 cut(s) 25, 79, 545
NlaIII CATG 4 cut(s) 57, 832, 1035, 1043
NlaIV GGNNCC 1 cut(s) 848
NsiI ATGCAT 1 cut(s) 22
NspI RCATGY 1 cut(s) 1043
NspV TTCGAA 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 505
PaeR7I CTCGAG 1 cut(s) 269
PciI ACATGT 1 cut(s) 1039
PciSI GCTCTTC 1 cut(s) 624
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 4 cut(s) 140, 238, 419, 1124
PkrI GCNGC 4 cut(s) 427, 430, 841, 1143
PscI ACATGT 1 cut(s) 1039
Psp124BI GAGCTC 1 cut(s) 619
Psp6I CCWGG 2 cut(s) 779, 849
PspFI CCCAGC 2 cut(s) 767, 842
PspGI CCWGG 2 cut(s) 779, 849
PspN4I GGNNCC 1 cut(s) 848
PspPI GGNCC 2 cut(s) 510, 847
PstI CTGCAG 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 505
SacI GAGCTC 1 cut(s) 619
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 4 cut(s) 12, 188, 336, 398
SatI GCNGC 4 cut(s) 426, 429, 840, 1142
Sau3AI GATC 3 cut(s) 25, 79, 545
Sau96I GGNCC 2 cut(s) 510, 847
ScrFI CCNGG 2 cut(s) 781, 851
SduI GDGCHC 2 cut(s) 619, 821
SfaNI GCATC 4 cut(s) 7, 231, 265, 313
SfcI CTRYAG 4 cut(s) 361, 423, 575, 834
Sfr274I CTCGAG 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 378
SinI GGWCC 1 cut(s) 847
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 505
SmlI CTYRAG 4 cut(s) 66, 269, 397, 869
SmoI CTYRAG 4 cut(s) 66, 269, 397, 869
Sse9I AATT 3 cut(s) 672, 751, 785
SspI AATATT 1 cut(s) 796
SspMI CTAG 1 cut(s) 491
SstI GAGCTC 1 cut(s) 619
StyD4I CCNGG 2 cut(s) 779, 849
StyI CCWWGG 3 cut(s) 297, 744, 990
TaaI ACNGT 7 cut(s) 334, 392, 572, 579, 950, 1109, 1134
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 270, 378
TasI AATT 3 cut(s) 672, 751, 785
TfiI GAWTC 4 cut(s) 140, 238, 419, 1124
Tru1I TTAA 4 cut(s) 12, 188, 336, 398
Tru9I TTAA 4 cut(s) 12, 188, 336, 398
TscAI CASTG 3 cut(s) 507, 942, 1139
TseI GCWGC 4 cut(s) 425, 428, 839, 1141
TspDTI ATGAA 7 cut(s) 449, 491, 611, 893, 918, 932, 1023
TspRI CASTG 3 cut(s) 507, 942, 1139
Vha464I CTTAAG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 847
XapI RAATTY 1 cut(s) 672
XceI RCATGY 1 cut(s) 1043
XcmI CCANNNNNNNNNTGG 1 cut(s) 504
XhoI CTCGAG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 574
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 491
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.